Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g02262 ATGGAGAACGGGAAGGATTGCGCCATGGAAGAGATTTTACTGGCGAAGCAGAAGGAAAACAATCTCTCTTCAACAACCAGGGGTGTTTACTTGGAAGAGATGAAGAGAGTAGGATTCTTGGCAGCGCCGTTGGTCGCCGTCACTTTCTCGCAGTATATGTTGCAGATCATCACGATGATGATGGTCGGTCATCTCGGTGCTCTCGCACTCTCCAGCACCGCCATAGCAGTTTCCATTTCTGCAGTTACAGGGTTCAGCGTTCTCGTTGGATTCAACCCATGTTATGGCTCGAGGAAGCCACTGTCATATTGCATCAATGCCGTTGTTTCTTCTTATGGCTTGTCCAGTGCCCTCGAAACTCTATGTGGACAAGCTTATGGAGCTCAGCAATATCAAAAAGTTGGAGTTCAAACTTACACTGGTATGTTTTGCATCTTCTTAATTTGCATTCCTCTGTCCCTATCTTGGCTCTTCTTGGAAAAGCTACTTCTATTCGTCGGTCAAGATCCTCTGATTTCGCACGAAGCTGGGAAATTCATTGTTTGGCTGATTCCTGGGCTCTTTGCTTGTGCATTTCTTCAACCACTTGTGAGATATTTCCAGGCACAAAGCTTAGTAATTCCCATGGTCATTTTCTCTTGCATCACTCTCTGCTTCCACATACCACTTTGTTGGTTCATGGTGTATAAGGCTGGACTCAGAAATCTGGGAGGAGCATTATCAATGAGTCTGTCATATTGGTTGAATGTGATTTTGCTAGGATTATACATGAAATTCTCGCCTAAGTGTGAGAAAACTCGTGGAGTCATTTCTATGGAGCTGTTTCGAGGAATTCGAGATTTCTTCACCTTGGCAATTCCTTCTGCGGTGATGGTTTGCCTTGAATGGTGGTCATTTGAGCTGATTATCTTACTTTCAGGGCTGTTGCCAAATCCGGAGCTTGAAACTTCAGTTTTATCTGTTTGGTATTTGGCTCTTCTTAACAGTCTCAATACAATTGCTACCCTTTATTCAATAGCATATGGACTTGGTGCTGCCGGAAGGTATGTTCTTAGCAACATGCACATCACAAGAGTTTCCAACGAACTAGGTGCTGGGAATCCGCAGGCGGCTCGTCGAGCAACAAGCGTCGTTGTATTCCTCGCCATCTTGGAAACCTCAATATTGAGCATAATTCTTTTTGCTCTTCGTCACCTCTTTGGTTATACGTTCAGCAATGAGAAGGATGTTGTGGCTTATGTCGCCTCCATGGCACCTCTGATTTGCATATCTGTGATACTGGACGGCATACAGGGAGTCCTTTCAGTTGCTGCCCTTCTTGGTTTCTTGGTGCATCTGAGAGGAAGAGGGCTTTGGATTGGCATACAAATTGGGGCTTTTGTGCAAGCCATGTTGCTCTCCTTCATTACAAGTCGAATAAATTGGGAAGAACAGCGCATCTATATAGTGTATACATTTGTGCTAATCCATGGGTTACAGTCGCCGACAGTAATGGGGAAAGCGGATAAAGAGCGGCTCATTCGAACTCTCAATTCGCATCTGAACACCATCCATGAAACCTTTCAGATGTTGGATCAAAACCCATCGTCTTCCCTCGAAAAGGTGAGCTGGGAGGATGTTCTAAAAATGGGCGACCAAGTCTACAAGCAGGCGACTATTGCTGGAATGGTGTGGACTGGAGAAAGACTAGAAGTTAAAGCAATTGAGGAAAATATGGCATCTTATTTCAATATGCTGCAGGGTTTCCTGCTGGTTTCCCATGGGAGTAAAGTGGGCGCTGGCCCTACTTTGTCTTCTGTTATCCATGCATCTGTGAAGCAAATTAATTTTAAAGAAGGAAAAGATCTTATCTTCCTTGACATATGGATGTTGTGTTGTACATTGATTTGGAGACCACGGAATAACGAGGATCAAAACCAAGTAGTTCCACTATTGGTTGGGGCGGTTTGGGAAGCTTGCTCTGCTCTTAAAAAAGCTCCTTCCACAAATATAACTGCGATTGGCCGAGCAATAACCCAGGTAGCTGTATCAGTGAAGGATGTCCTTCGAGAAATGAAGGAGCTTAAACAAGGTTCCTCCGACTTGGACGAAGCTCCTGAAGAACCTTCTAACAGAGTTGAAGGCGATTCGCAAGATGAGGGCAATACAAACGATGATGCTGATATAGGCAACGATTTGTCAGCCGAAGAGATGAGAGTTGCTCAATCTGCCATTAGTGTTGTATCTTCAATTCTTCTAGTTATAAAGGAACTCATTCGCTCTATCACAAGTTTGCTTAAGCTGGAAAATGTAAACAAGGAAAGTAACTTAGCGTCCTTGGAGAATCTATTGAAGCTATGCCAAGGAATTGGAGTGCAGGTTGACGAGCTTGGAGCTTGTCTTTACCCCCCACAAGAGGCCGCTGCCATTAAAGTAGCTTCTGAGAAAATCTCTAGCCTTCTTGACAACATGCAGGCAGAGTTGGGAAGTCTTAATGGTAATTCGGAAGCCTTTCTTCAGGCAGGCAACAATCTCCGAAATTCGTTGACGCAGCTCGAGATTGAACTAGGTGACTTCACATCTACTGATGTAGAAAGTAGAATGCAGAAAGTAACTTTAAGCGACTAA 2607 44.27 MENGKDCAMEEILLAKQKENNLSSTTRGVYLEEMKRVGFLAAPLVAVTFSQYMLQIITMMMVGHLGALALSSTAIAVSISAVTGFSVLVGFNPCYGSRKPLSYCINAVVSSYGLSSALETLCGQAYGAQQYQKVGVQTYTGMFCIFLICIPLSLSWLFLEKLLLFVGQDPLISHEAGKFIVWLIPGLFACAFLQPLVRYFQAQSLVIPMVIFSCITLCFHIPLCWFMVYKAGLRNLGGALSMSLSYWLNVILLGLYMKFSPKCEKTRGVISMELFRGIRDFFTLAIPSAVMVCLEWWSFELIILLSGLLPNPELETSVLSVWYLALLNSLNTIATLYSIAYGLGAAGRYVLSNMHITRVSNELGAGNPQAARRATSVVVFLAILETSILSIILFALRHLFGYTFSNEKDVVAYVASMAPLICISVILDGIQGVLSVAALLGFLVHLRGRGLWIGIQIGAFVQAMLLSFITSRINWEEQRIYIVYTFVLIHGLQSPTVMGKADKERLIRTLNSHLNTIHETFQMLDQNPSSSLEKVSWEDVLKMGDQVYKQATIAGMVWTGERLEVKAIEENMASYFNMLQGFLLVSHGSKVGAGPTLSSVIHASVKQINFKEGKDLIFLDIWMLCCTLIWRPRNNEDQNQVVPLLVGAVWEACSALKKAPSTNITAIGRAITQVAVSVKDVLREMKELKQGSSDLDEAPEEPSNRVEGDSQDEGNTNDDADIGNDLSAEEMRVAQSAISVVSSILLVIKELIRSITSLLKLENVNKESNLASLENLLKLCQGIGVQVDELGACLYPPQEAAAIKVASEKISSLLDNMQAELGSLNGNSEAFLQAGNNLRNSLTQLEIELGDFTSTDVESRMQKVTLSD 868
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 34269748 34280869 + ClCG05G022320.2 Cla05g02262 273752

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g02262 868 Pfam MatE 111 225 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Cla05g02262 868 Pfam MatE 287 435 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Cla05g02262 868 Pfam Grap2 and cyclin-D-interacting 539 818 - -
Cla05g02262 868 TIGRFAM matE: MATE efflux family protein 43 435 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Cla05g02262 868 PANTHER PROTEIN DETOXIFICATION 434 484 - -
Cla05g02262 868 PANTHER PROTEIN DETOXIFICATION 22 91 - -
Cla05g02262 868 CDD MATE_eukaryotic 33 478 IPR045069 GO:0042910|GO:1990961
Cla05g02262 868 Gene3D I/LWEQ domain 659 853 - -
Cla05g02262 868 PANTHER MULTIDRUG RESISTANCE PROTEIN 104 433 - -
Cla05g02262 868 PANTHER MULTIDRUG RESISTANCE PROTEIN 434 484 - -
Cla05g02262 868 PANTHER MULTIDRUG RESISTANCE PROTEIN 22 91 - -
Cla05g02262 868 MobiDBLite consensus disorder prediction 689 712 - -
Cla05g02262 868 MobiDBLite consensus disorder prediction 689 723 - -
Cla05g02262 868 PANTHER PROTEIN DETOXIFICATION 104 433 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g02262 K03327 TC.MATE, SLC47A, norM, mdtK, dinF; multidrug resistance protein, MATE family - csv:101213643 716.842
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g02262 Cla-Chr5:34269748 Cla06g01443 Cla-Chr6:28002782 5.91E-112 dispersed
Cla08g00101 Cla-Chr8:2077186 Cla05g02262 Cla-Chr5:34269748 3.28E-13 dispersed
Cla05g02262 Cla-Chr5:34269748 Cla06g01437 Cla-Chr6:27936273 1.26E-72 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g387 . . . . . . . . . Cmo18g00994 . Cma18g00986 . . . Cpe09g00331 Cpe01g01317 Bhi07g01253 . . Lac13g0548 Hepe01g1149 . . Cla05g02262 Cam05g2432 Cec05g2449 Cco05g2495 Clacu05g2421 Cmu05g2288 Cre05g2406 . . . . Lsi04g00207 Csa05g02660 Chy10g01191 Cme10g00211 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012569 0 1 1 1 1 1 2 1 1 1 1 1 3 1 1 0 1 2 1 1 1 0 1 1 1 0 0 1 1 1 29