Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g02265 ATGAAGGACCGCTCTCCTTCCTCCAATGGCGCTGTTTACGTCCCTCCTCACGTCCGTCTCCGCTCCGTCGTTACCCCTTCTTATAATTCCTCTGCTGTTTCCGCTGTTGACTGCAAGCTCAAGGCGGCTCCAGCCTCGCTGCTCGATTCAGGAACCACTGCTTCACCTTGCCTTCATGCTCGATCTGAAGAACTGCTTCCAACGGGGAACTCGCGTTTTAATTCCGTGCAGTATGATTCGGCCTACGACGATGGGACTCCTGTGGAGAGTTGGACTTGTAATTTCGAGTGTTCGCATCAATCGGGTTTTCAACCTTCTGTCAACATTGATTTGTGGAAAAGGAAGTTAGCATTACTTTTACGTGACAAGGAGAAGCAAGAGTTAATTTCAAGGGAGAAAAAAGATAGACAAGACTTTGAGGAAATAGCTGCTTTGGCAAGTAGAATGGGACTTTTTAGCCATCTATATGCCAAAGTTGCTGTATTTAGTAAGGTCCCATTGCCGAACTACAGATTTGATTTGGATGATCGGCGTCCACAGAGAGAGGTCTCTTTGCCTCCTGGGTTGCTTAGAAGAGTTGATGAACATCTGGTAGAATTTCTCTCTCACAAGTCTATGCATAAAGGTTTTCAAGATATTTCCGTCTCTAGATCAAGCAGCGGTGGTAGCATTGCTACAGATGAAGGGCTTTTTGAGCAACCTGAGCCACAAGCATCTAGTAAGGCTGTAATGGAAAAAATTCTTTGGAGGAGAAGTTCACATCTGCGTGATCAACAGCAGGCTTGGCAGTCATCTCTTGAAGGAAGAGAAATGCTGGAATTTCGGAAAAATCTCCCTGCTTACAAGGAGAAGGATGCATTATTGGCCACAATCTCACAGAATCAGGTTATTATTATTTCAGGTGAAACTGGTTGTGGCAAGACTACGCAAGTTCCCCAGTTCATTTTGGAATCAGAAATAGAATCACTCCGTGGGGCTGTTTGCAGCATCATATGTACACAGCCAAGACGAATATCTGCCATGTCTGTCTCTGAGAGAGTTGCTTCTGAAAGAGGGGAGAAATTGGGTGAATCTGTTGGTTATAAAGTGCGGCTGGAGGGTATGAAAGGGAGGGATACTCATCTTCTCTTTTGCACCACGGGTATCTTGTTGAGAAGATTGCTTGTTGATAGAAATTTGAAAGGCATAACTCACGTCATTGTTGATGAAATTCATGAGCGTGGAATGAATGAAGATTTTCTGCTTATTGTCCTGAAAGATCTCCTTCCTCGTCGACCAGAATTGAGGTTGATTTTAATGAGTGCAACTTTAGATGCAGAACTTTTCTCATCCTACTTTGGTGGGGCTCAAATAATTCACATTCCGGGATTCACACACCCTGTCCAAACTCATTTTCTGGAGGATATTCTAGAAATGACGGGTTACAGATTGACTCCATACAATCAAATAGATGACTATGGTCAAGAGAAGACATGGAAAATGAGCAAACAAGCACCAAGAAAGAGGAAAACCCAGATTGCCTCCACTGTTCAGGATGCACTTATGTCAGCTGATTTTAAGGAGTACAGTCTTCAAACTCAGGAGTCCTTATCGTGTTGGAATCCAGACTGTCTTGGTTTTAATCTCATAGAATATCTTCTAGTCAGGATATGCGAGAGTGAAACACCTGGAGCTATTCTTGTTTTTATGACTGGGTGGGATGACATCAGTTCTCTGAAGGAGAAACTTCAGTCTCATCCTTTATTAGGAGATCCGAGTCGTGTCATGTTGTTGGCGTGCCATGGCTCAATGGCCAGTTCAGAGCAGAGGTTAATATTTACTGAACCTGACGAAGGAGTGAGGAAGGTAGTGCTTGCAACAAATATTGCCGAGACAAGTATCACGATAAATGATGTTGTGTATGTTCTGGACTGTGGAAAGGCAAAAGAAACATCGTATGATGCTTTAAATAACACTCCTTGTTTGCTTCCGTCTTGGATATCCAAGGTTTCTGCTCAACAAAGAAGAGGAAGGGCTGGCCGTGTTCAACCAGGAGAATGTTACCATCTATACCCTAGGTGTGTGTTTGGTTCTTTCTCTGAGTATCAGCTACCAGAAATTTTGAGAACACCTTTACAGTCCCTCTGCTTGCAAATAAAAAGCTTAAGGCTCGGAAGTATATCAGAGTTTCTATCTCGGGCTTTGCAATCACCAGAGCTACTAGCGGTTGGTCTTTTTCCGTATTTCAGTCTGGATACAGTTCAGAATGCTATTGAATATTTGAAGATGATTGGAGCATTTGATGAGAGTGAAAATCTTACTGTTTTAGGTCGTTATTTGACTATGCTCCCAATGGAGCCAAAACTGGGAAAGATGTTGATAGTAGGTGCTATCTTCAATTGTTTGGATCCAATTTTGACCATTGTTGCTGGCCTCAGTGTGAGAGACCCTTTTCTAATGCCACTTGAGAAGAAGGATGCTGCAGAGGCTGCAAAATCTAAATTTTCACAAGATCATAGTGATCACCTTGCTATTATCCGGGCTTATGGGGGATGGAAAGAAGCTGAGAGGAACTTTGGTGGATATGACTTCTGTTGGAAGAACTTCCTTTCTGTACAATCGATGAAGGCTATTGATTCACTAAGGAAGGAGTTTTTTTCTTTGCTTAGAGATACTGGCTTGGTTGATGGGTACTCAGACACCTACAATGCTTGGAGTCTTGATGAACAACTTATACGTGCAGTTATTTGCTATGGCCTTTATCCTGGAGTTTGCTCCGTTGTGTTTATGCTTTGCATTGTTGAGGTCAAAACGTGTGGACATTGTAATGCTAGCTACCTTGTGCAGACTGTCAGTGTCAGTCATAGATTCAACAAGGACATTATTGCAGGACACCATAATGAGAAGTCATTTTCTCTCAAAACTATGGAGGATGGCCAGGTGCTCCTCTATTCGAACTCAGTCAATGCTCGAGAGTCGAGGATTCCATATCCATGGATAGTTTTTAATGAGAAGATTAAAGTGAACTCCATTTTCCTTCGAGATTCAACAGCCATCTCTGACTCAATGTTGCTTCTCTTTGGTGGAAGCATCTCAAAAGGGGATCATCTGCTAAATCCAAAGATGGACTTGCACTCCCACCATGAGCTCCTATCTGCTGTACGCTTGCTTATTTCAGAAGACCAGTGTGAAGGTCGATTCATTTTTGGCCGCCAGATCCTTCAGCAACCCTTCAAGACGTCAGCTCCTGCAGCAGCACCAACTGCTGTTTCAAGAATTGAAAGTGGACCTGGTGGTGACAATTCTAAGAGTCAGCTCCAGACTTTACTCACGAGAGCTGGATATGCTGCACCCATCTATAAGACTAAGCAATTGAAGAACAATCAATTCCGAGCAACCGTGGAATTTAATGGACTGCAAATTATGGGACAGCCTTGTACCAACAAAAAGAATGCAGAAAAGGATGCAGCAGCTGAGGCTCTTGAGTGGTTGATGGGTGGAAATCAGACAGGGCACGACTATGTCAACCAAATGTCTATGATGCTAAAAAGGAGCAAGAAGGATCATAACTAA 3552 43.19 MKDRSPSSNGAVYVPPHVRLRSVVTPSYNSSAVSAVDCKLKAAPASLLDSGTTASPCLHARSEELLPTGNSRFNSVQYDSAYDDGTPVESWTCNFECSHQSGFQPSVNIDLWKRKLALLLRDKEKQELISREKKDRQDFEEIAALASRMGLFSHLYAKVAVFSKVPLPNYRFDLDDRRPQREVSLPPGLLRRVDEHLVEFLSHKSMHKGFQDISVSRSSSGGSIATDEGLFEQPEPQASSKAVMEKILWRRSSHLRDQQQAWQSSLEGREMLEFRKNLPAYKEKDALLATISQNQVIIISGETGCGKTTQVPQFILESEIESLRGAVCSIICTQPRRISAMSVSERVASERGEKLGESVGYKVRLEGMKGRDTHLLFCTTGILLRRLLVDRNLKGITHVIVDEIHERGMNEDFLLIVLKDLLPRRPELRLILMSATLDAELFSSYFGGAQIIHIPGFTHPVQTHFLEDILEMTGYRLTPYNQIDDYGQEKTWKMSKQAPRKRKTQIASTVQDALMSADFKEYSLQTQESLSCWNPDCLGFNLIEYLLVRICESETPGAILVFMTGWDDISSLKEKLQSHPLLGDPSRVMLLACHGSMASSEQRLIFTEPDEGVRKVVLATNIAETSITINDVVYVLDCGKAKETSYDALNNTPCLLPSWISKVSAQQRRGRAGRVQPGECYHLYPRCVFGSFSEYQLPEILRTPLQSLCLQIKSLRLGSISEFLSRALQSPELLAVGLFPYFSLDTVQNAIEYLKMIGAFDESENLTVLGRYLTMLPMEPKLGKMLIVGAIFNCLDPILTIVAGLSVRDPFLMPLEKKDAAEAAKSKFSQDHSDHLAIIRAYGGWKEAERNFGGYDFCWKNFLSVQSMKAIDSLRKEFFSLLRDTGLVDGYSDTYNAWSLDEQLIRAVICYGLYPGVCSVVFMLCIVEVKTCGHCNASYLVQTVSVSHRFNKDIIAGHHNEKSFSLKTMEDGQVLLYSNSVNARESRIPYPWIVFNEKIKVNSIFLRDSTAISDSMLLLFGGSISKGDHLLNPKMDLHSHHELLSAVRLLISEDQCEGRFIFGRQILQQPFKTSAPAAAPTAVSRIESGPGGDNSKSQLQTLLTRAGYAAPIYKTKQLKNNQFRATVEFNGLQIMGQPCTNKKNAEKDAAAEALEWLMGGNQTGHDYVNQMSMMLKRSKKDHN 1183
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 34299135 34311124 - ClCG05G022365.1 Cla05g02265 273755

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g02265 1183 Pfam Helicase conserved C-terminal domain 544 675 IPR001650 -
Cla05g02265 1183 PANTHER DEXH-BOX ATP-DEPENDENT RNA HELICASE DEXH5, MITOCHONDRIAL 958 1024 - -
Cla05g02265 1183 PANTHER DEXH-BOX ATP-DEPENDENT RNA HELICASE DEXH5, MITOCHONDRIAL 80 921 - -
Cla05g02265 1183 Gene3D - 743 839 - -
Cla05g02265 1183 Pfam DEAD/DEAH box helicase 288 438 IPR011545 GO:0003676|GO:0005524
Cla05g02265 1183 PANTHER ATP-DEPENDENT RNA HELICASE 958 1024 - -
Cla05g02265 1183 PANTHER ATP-DEPENDENT RNA HELICASE 1029 1106 - -
Cla05g02265 1183 CDD DEXHc_RHA-like 294 454 - -
Cla05g02265 1183 Gene3D - 232 456 IPR027417 -
Cla05g02265 1183 PANTHER ATP-DEPENDENT RNA HELICASE 80 921 - -
Cla05g02265 1183 SMART helicmild6 570 676 IPR001650 -
Cla05g02265 1183 Pfam Double-stranded RNA binding motif 1095 1157 IPR014720 -
Cla05g02265 1183 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1094 1159 IPR014720 -
Cla05g02265 1183 Gene3D - 1079 1161 - -
Cla05g02265 1183 SMART DRBM_3 1095 1158 IPR014720 -
Cla05g02265 1183 Pfam Oligonucleotide/oligosaccharide-binding (OB)-fold 905 1024 IPR011709 -
Cla05g02265 1183 Gene3D - 541 694 IPR027417 -
Cla05g02265 1183 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 282 847 IPR027417 -
Cla05g02265 1183 CDD SF2_C_RHA 459 684 - -
Cla05g02265 1183 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 288 455 IPR014001 -
Cla05g02265 1183 Pfam Helicase associated domain (HA2) 750 827 IPR007502 GO:0004386
Cla05g02265 1183 SMART ha2_5 749 839 IPR007502 GO:0004386
Cla05g02265 1183 SMART ultradead3 276 464 IPR014001 -
Cla05g02265 1183 PANTHER DEXH-BOX ATP-DEPENDENT RNA HELICASE DEXH5, MITOCHONDRIAL 1029 1106 - -
Cla05g02265 1183 SUPERFAMILY dsRNA-binding domain-like 1090 1172 - -
Cla05g02265 1183 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 542 716 IPR001650 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g02265 K14442 DHX36, RHAU; ATP-dependent RNA helicase DHX36 [EC:3.6.4.13] - csv:101208774 2049.63
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g02246 Cla-Chr5:34112949 Cla05g02265 Cla-Chr5:34299135 0 dispersed
Cla05g02265 Cla-Chr5:34299135 Cla10g01738 Cla-Chr10:33228263 0 dispersed
Cla10g00801 Cla-Chr10:17928684 Cla05g02265 Cla-Chr5:34299135 2.92E-49 dispersed
Cla03g00741 Cla-Chr3:8984178 Cla05g02265 Cla-Chr5:34299135 1.36E-91 transposed
Cla03g01006 Cla-Chr3:19020765 Cla05g02265 Cla-Chr5:34299135 8.89E-28 transposed
Cla07g01025 Cla-Chr7:26661597 Cla05g02265 Cla-Chr5:34299135 8.35E-61 transposed
Cla09g00509 Cla-Chr9:4801825 Cla05g02265 Cla-Chr5:34299135 3.23E-30 transposed
Cla09g01739 Cla-Chr9:34729095 Cla05g02265 Cla-Chr5:34299135 6.63E-33 transposed
Cla10g00507 Cla-Chr10:6715856 Cla05g02265 Cla-Chr5:34299135 9.02E-75 transposed
Cla05g02265 Cla-Chr5:34299135 Cla06g01442 Cla-Chr6:27992241 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g379 . . . . . . . . Cmo04g01553 Cmo18g00996 . Cma18g00989 Car04g01538 Car18g00910 Sed08g0382 Cpe09g00328 Cpe01g01321 Bhi07g01273 Tan04g0802 Cmetu02g0065 Lac13g0540 Hepe01g1156 . . Cla05g02265 Cam05g2435 Cec05g2454 Cco05g2498 Clacu05g2426 Cmu05g2292 Cre05g2409 Cone13ag0794 Cone19ag0798 . . Lsi04g00213 Csa05g02653 Chy10g01185 Cme10g00219 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001665 2 2 2 3 2 2 3 2 2 2 2 2 3 2 3 3 2 3 3 2 2 1 2 2 2 2 2 6 2 2 70