Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g02273 ATGACTTCCTGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGAGGTTGAAGTCAAGGGAGTGTTTACAGGAGCAGGCTGTAACAGAATAGTGAACAACGTTTCTTGGGGAGCCTGTGATTTAGTGGCTTTTGGCGCTCAAAACGCCGTCGCCATCTTCTCTCCTAAGTCTGCACAAATTTTGACGACCCTTCCCGGTCACAACGCCTCTGTGAACTGCACTCATTGGCTTCCAAGTAACAAGTTTTCGTTTAGAGAAATTATCTTCCAAGGTCTATATCCACCTTCCAAGCATTTGAAGTGTCATTATTTGCTATCTGGTGACTCTGATGGCGTCATTCATTTATGGGAGCTGTCTTTTCTGGACCAGAAGTGGAGAAATGTTTTACAACTACCAAAATCACACAAGAAAGGCATCACATGTATTACTGCACATGTAATTTCTGAAACGGTGGCAATTGTTGCATCTGCTTCTTCAGATGGTTCGATTTGTGTTTGGGAGGTCGCTTTTCCGTCTACCAAAGAAGGTGATTGTACATTGTTGTTGCTGGACTCGCTCATGGTTGGTTCCAAATCTATGGTGGCACTTTCATTAGCAGAATTGCCTGGAAATGTCAGTCATATGGTCCTGGCTATGGGAGGCTTGGATAATAAGATTCATCTGTATTGTGGGAAGAGAACTGGAGAGTTTGTTAAGGCATGTGAGCTCAAAGCGCATACAGATTGGATTAGAAGTCTGGACTTCTCTTTGCCTATGGGAAAAAATGGAGAAGCAAACAGCATTATGCTTGTAAGTTCATCTCAGGACAGAGGCATACGCATATGGAAAATGGTTCTTCATGGTTCTTCAACTGACATAAATGGAGGATGCAAAAAAGAAGAAATAAGTTTAACATCTTATATACAAGGTCCTATATTTACTGCTGGACCATTAACTTACCAGGTATCATTAGAGTCACTTTTGATTGGACATGAGGATTGGGTATATTCAGTCCAATGGCAGCCGCCTTCAGCTTCAGAAACAGAAGGGGCTCCGTGCTATCAATCTGAAAGCATCCTATCTGCATCTATGGACAAGACAATGATGATTTGGAAGCCTGAAAAGATTTCTGGGATCTGGATGAATGTGGTTACTGTTGGAGAGTTAAGTCATTGTGCTTTAGGGTTCTATGGTGGGCATTGGAGCCCTAATGGAGATTCAATTTTAGCACATGGTTACGGTGGGTCTTTTCATCTCTGGAAAAATGTTGGTATTGGTTCAGATAACTGGAAACCTCAAAAGGTTCCCTCAGGACATTTTGCTGCTGTCATGGATATTTCATGGGCTAGATCTGGTGATTATATTATTTCAGTCAGCCATGACCAGGCTAGGCAAAGGGTATGCCCACATGAGAGTGAGAGGGGGAAAAGTTTAGCTTCTGGTGGACACGAGATGTATGGGGAGGTAAGGATCTCTGTTGTTTCCTTAGCTGCTACAACTCGGATTTTTGCTCCCTGGAAAAATGTCAATTCTCTCAAAGGAGGTTCTTGGCATGAAATTGCTCGACCTCAGGTTCATGGTCATGATATTAATTGTGTCACCATAATAAAAGGGAAGGGGAACCATCGCTTTGTCAGCGGAGCCGAAGAGAAAGTTGTTAGAGTCTTTGAAGCTCCATTATCTTTTTTGAAGACATTGAGTCATGCCACACTGGAGAATGTTGTGGCCACTGAAGATCACCTTGTGGATGTTCAGATCTTGGGTGCTAATATGTCGGCGCTCGGCCTTTCACAGAAACCTATTTATGTTCACTCTGTGGATAAGACACCAGACAGGAGTGGAAATGAAGGTATTGACACCCTTGAAACCATTCCCGATGCAGTTCCTGTCGTTCTTACTGAACCCCCCATTGAAGATCAATTGGCATGGCATACACTTTGGCCAGAGTCGCACAAACTTTATGGTCATGGGAATGAGCTATTTTCTCTAAGTTGTGATCACAAGGGGAAGCTTGTTGCATCATCCTGTAAGGCACAAACGGCATCAGTAGCAGAAATATGGCTTTGGGAAGTTGGTTCATGGAAGGCAGTCGGTCGTTTGCAATCTCACAGCTTAACAATAACGCAACTGGAGTTCTCCCATGATGACAGTATGCTATTGGCAGTCTCAAGGGATCGCCAGTTTTCTGTTTTCAAAATCCAGAGAACAGGCTCGGATGAAATCCACCATGAGCTTATATCAAGGCAGGAGGCACACAGAAGAATCATATGGTCATGTTCTTGGAACCCACATGGTCATGAGTTTGCAACAGGCTCTAGGGATAAGACTGTCAAGATATGGGCTGTCACAGCTGAATCTTCAGTTAAGCAGTTAACAACTCTCTCACAGTTCAAATCTAGTGTCACTGCTTTATCATGGGTCGGTCTTGATCCCAAGAGCAATGGACTCCTTGCAGTTGGAATGGAAAATGGCCTTCTTGAGTTTTGGAGTTTGTCTTTCAAAAGAACAGATAATGTCTGCTCAAATGTAGTTGCTTCAGTCGCTTTACGCCTCGATCCATTTGATTGTCATGTTTCCTCGGTCAACCGTTTGGCATGGAAGGAACCGGAGAAGAGTGGTGAAGAGTGCAGGAAGCTGCAACTTGCATCTTGTGGCGCTGATCACTGTGTTAGAGTGTTTGAGGTAAATGTTTCTGTATGA 2682 44.33 MTSCGGGGGGGGGGGEVEVKGVFTGAGCNRIVNNVSWGACDLVAFGAQNAVAIFSPKSAQILTTLPGHNASVNCTHWLPSNKFSFREIIFQGLYPPSKHLKCHYLLSGDSDGVIHLWELSFLDQKWRNVLQLPKSHKKGITCITAHVISETVAIVASASSDGSICVWEVAFPSTKEGDCTLLLLDSLMVGSKSMVALSLAELPGNVSHMVLAMGGLDNKIHLYCGKRTGEFVKACELKAHTDWIRSLDFSLPMGKNGEANSIMLVSSSQDRGIRIWKMVLHGSSTDINGGCKKEEISLTSYIQGPIFTAGPLTYQVSLESLLIGHEDWVYSVQWQPPSASETEGAPCYQSESILSASMDKTMMIWKPEKISGIWMNVVTVGELSHCALGFYGGHWSPNGDSILAHGYGGSFHLWKNVGIGSDNWKPQKVPSGHFAAVMDISWARSGDYIISVSHDQARQRVCPHESERGKSLASGGHEMYGEVRISVVSLAATTRIFAPWKNVNSLKGGSWHEIARPQVHGHDINCVTIIKGKGNHRFVSGAEEKVVRVFEAPLSFLKTLSHATLENVVATEDHLVDVQILGANMSALGLSQKPIYVHSVDKTPDRSGNEGIDTLETIPDAVPVVLTEPPIEDQLAWHTLWPESHKLYGHGNELFSLSCDHKGKLVASSCKAQTASVAEIWLWEVGSWKAVGRLQSHSLTITQLEFSHDDSMLLAVSRDRQFSVFKIQRTGSDEIHHELISRQEAHRRIIWSCSWNPHGHEFATGSRDKTVKIWAVTAESSVKQLTTLSQFKSSVTALSWVGLDPKSNGLLAVGMENGLLEFWSLSFKRTDNVCSNVVASVALRLDPFDCHVSSVNRLAWKEPEKSGEECRKLQLASCGADHCVRVFEVNVSV 893
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 34378248 34384835 - ClCG05G022460.2 Cla05g02273 273763

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g02273 893 SUPERFAMILY WD40 repeat-like 239 825 IPR036322 GO:0005515
Cla05g02273 893 SMART WD40_4 315 366 IPR001680 GO:0005515
Cla05g02273 893 SMART WD40_4 510 551 IPR001680 GO:0005515
Cla05g02273 893 SMART WD40_4 58 118 IPR001680 GO:0005515
Cla05g02273 893 SMART WD40_4 781 824 IPR001680 GO:0005515
Cla05g02273 893 SMART WD40_4 640 684 IPR001680 GO:0005515
Cla05g02273 893 SMART WD40_4 736 775 IPR001680 GO:0005515
Cla05g02273 893 SMART WD40_4 687 726 IPR001680 GO:0005515
Cla05g02273 893 SMART WD40_4 376 415 IPR001680 GO:0005515
Cla05g02273 893 SMART WD40_4 230 277 IPR001680 GO:0005515
Cla05g02273 893 SMART WD40_4 841 888 IPR001680 GO:0005515
Cla05g02273 893 SMART WD40_4 423 461 IPR001680 GO:0005515
Cla05g02273 893 SMART WD40_4 125 168 IPR001680 GO:0005515
Cla05g02273 893 PANTHER ELONGATOR COMPLEX PROTEIN 2 487 891 - -
Cla05g02273 893 PRINTS G protein beta WD-40 repeat signature 264 278 IPR020472 -
Cla05g02273 893 PRINTS G protein beta WD-40 repeat signature 762 776 IPR020472 -
Cla05g02273 893 PRINTS G protein beta WD-40 repeat signature 155 169 IPR020472 -
Cla05g02273 893 Gene3D - 633 735 IPR015943 GO:0005515
Cla05g02273 893 PANTHER WD REPEAT-CONTAINING 487 891 - -
Cla05g02273 893 Gene3D - 420 604 IPR015943 GO:0005515
Cla05g02273 893 Gene3D - 306 419 IPR015943 GO:0005515
Cla05g02273 893 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 743 774 - -
Cla05g02273 893 PANTHER WD REPEAT-CONTAINING 16 472 - -
Cla05g02273 893 SUPERFAMILY WD40 repeat-like 42 368 IPR036322 GO:0005515
Cla05g02273 893 Gene3D - 736 892 IPR015943 GO:0005515
Cla05g02273 893 Gene3D - 32 303 IPR015943 GO:0005515
Cla05g02273 893 Pfam WD domain, G-beta repeat 133 167 IPR001680 GO:0005515
Cla05g02273 893 Pfam WD domain, G-beta repeat 236 277 IPR001680 GO:0005515
Cla05g02273 893 Pfam WD domain, G-beta repeat 424 455 IPR001680 GO:0005515
Cla05g02273 893 Pfam WD domain, G-beta repeat 60 117 IPR001680 GO:0005515
Cla05g02273 893 Pfam WD domain, G-beta repeat 322 366 IPR001680 GO:0005515
Cla05g02273 893 Pfam WD domain, G-beta repeat 745 774 IPR001680 GO:0005515
Cla05g02273 893 ProSiteProfiles Trp-Asp (WD) repeats profile. 743 784 IPR001680 GO:0005515
Cla05g02273 893 PANTHER ELONGATOR COMPLEX PROTEIN 2 16 472 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g02273 K11374 ELP2; elongator complex protein 2 - csv:101209018 1566.98
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla04g01253 Cla-Chr4:27661222 Cla05g02273 Cla-Chr5:34378248 1.78E-136 dispersed
Cla05g02273 Cla-Chr5:34378248 Cla01g01766 Cla-Chr1:32581519 2.94E-09 dispersed
Cla05g02273 Cla-Chr5:34378248 Cla06g01715 Cla-Chr6:30699833 2.36E-06 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g358 . . . . . . Bma14g01910 . . Cmo18g01004 . Cma18g00995 . Car18g00918 Sed06g1949 Cpe09g00322 Cpe01g01327 Bhi07g01286 Tan04g0812 Cmetu10g0150 Lac13g0532 Hepe01g1164 . . Cla05g02273 Cam05g2443 Cec05g2464 Cco05g2508 Clacu05g2438 Cmu05g2301 Cre05g2419 . . Cone6ag0423 Cone9ag0445 Lsi04g00222 Csa05g02643 Chy10g01176 Cme10g00228 . . Bda07g01725 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011732 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 0 1 1 1 1 1 1 1 1 30