Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g02281 ATGTTCTCAAATCTCTCCATCTTCATCTTCATTTTCATCTTCCTGTCGCCCGAAACATCCACCCCCTCAGCCGCCGCCGACTACCACTTCGAGGCCTGCCAGCGGCGGATGTCCTGCGGCGACAACCAGACAATTCAATACCCATTTTACATCCATAATCGCCAAGATCCGTTTTGTGGGTACCCGGGATTTAAGCTGAAATGTCATCAAAACGGCCACCCGATCCTCCGTCTCGCTGGCAGAGACTTTTCCGTCCGCCGTATTTCATACGAAAATCACTTCCTCCGCCTCTCCAACCACGCCATTTTAACAGCCTCTGAGTGTAGTCCTTTGATTCGAAACCTCTCTGTTCTGCCTAACGAAGGGTTCCACCTCGCCGCTGGGCAGGGCGGCATTTGCGACAGAGAGGAAAGCCAGGAAGAGGCTGAGGAAAATGGGTTGGTGGTGGAATGGACAGCCGGAGAGTGTAAATTCTGCAACAGCAGCGGTGGGTTCTGTGGATTTGATAGTTCGACTCATTTGTTCAAGTGTTATTGTCGAGATCGACCCCATGCTTTTCATTGTACTCCGCCTCCGCCAGTAGCACTTCCGTTGGCTTGGAATGATAGCAGACATCCTCTTTGCCCGTCCTTCGAGTGTGGAAATCTGGGTCTCATAGGATTCCCTTTCAACAACGTGTCGCTCACTAATTGTGGATTTTACACGGTTAAAAATTGCTTTGGACAGCCAAAAATCCAGCTGAGTCGGGAAAAAGAACTATGGTTTGATGTTGTTGCCATATCTCAGGCTAATGTCATCCATATCAATGACTCAGAACTTCAGAAGCAAATAAATGCTCGCAATTGTTCTATTCTAGACGATCTGGCTCTTCCAACGTCTCCTTTAACTTCTTTATCCACAGATAATAATCTTACTTTGTATAAATGCACAGATACACCTAAAGATGCATTTCCTCTTTTCGTCAGTTCATTTAGTTGCTCTGGTTATTACACATACCTCAACACCAGTGTTTCACCCAACTGTTCCTCTTCCAAGTCTAAATTTTTGGTTCCAGTTCGCCCGGTTGGTCGCAATAACTCAGCTGTTGAGTTTACTTCTAATTTCCAACTTCAAGTGACCATATCCCTTCGTTGTCAACAATGTTTTCATAGCGGAGGCCAATGCTCGGATACCCGAGGATACTTCGTTTGTAAGGATGGAAACACAAAAATAAGAAAAGATAAACGTAACATTTTGTGGATTGCACTAGGTGCTGGATTCTCAGGCGTAATTTTGCTTGTCTTGTTATTTGCTCTTTGGTACCGTAGAAGAAGTCGGGCTGCTCCAAATATCATAACAAGGAATTTATCTTGTGAACCCTACTCAAAATTTGACTTGGATGATGGTGGTGGTGTGTGCTTTGAAGTCCCTGTTTTCTCATACGTCGAACTTGAAGCGGCCACTAACAAATTTGATCGTGATAAAGAACTTGGAGATGGTGGTTTTGGAACCGTGTACCATGGCAAACTCCATGATGGTCGGGAAGTTGCTGTGAAACGCCTTTATCAACATAACTATAGACGAGTAGAGCAATTCATGAATGAGGTTAAAATTCTCACCCGTCTTCGCCATAAAAATCTTGTCTCCCTTTATGGATGTACTTCAAGGCGCAGTCGTGAACTTCTCCTTGTTTATGAATTTGTCCCAAATGGTACTGTTGCTGATCATCTCCATGGAGAACAAGCAAGTTCCAGCTTGCTCACGTGGCCTATTCGGATGAACATTGCCATTGAAACAGCAAGTGCTCTAGTTTATCTCCATGCTTCGGATATCATTCATCGTGATGTGAAGACTACTAACATTCTCTTAGACAACAATTTTGCTGTCAAAGTTGCTGATTTTGGGATCTCTAGATTATTCCCAAACGATGTTAGTCATGTCTCAACTGCTCCTCAAGGGACCCCTGGTTATGTGGATCCCGAGTATTACCAATGTTATCAGCTGACAACCAAGAGTGATGTTTATAGTTTTGGTGTCGTATTAATCGAGCTTATATCGTCAATGCCAGCTGTTGATATAACAAGGCATCGACATGAGATTAACTTGTCTAACTTAGCTGTGAACAAAATTCTAAGACAGGAAATTGACGAGCTGATTGATCCATGTCTCGGGTATCAATCTGATAAAAATGTTCGACGGATGATAATGGCAGTGGCTTGGCTAGCTTTTCTATGTCTGCAGCAAGACAAGGAAAGAAGACCTACAATGGAAGAAGCCTTGGAATCTTTGAAGAGGATTGAGAGTGGGGAAGAAAGTGAGAATTTGCAAGATAATAGTGCACTGTTGAAGAGCTTTGACCCATCTCCTTCTCCAGAGTATGATGAGATTCAGTTGTTGAAGAACAAGAGGCAGCAGTTGTCCCCTACTTCTGTTGCTGATAAATGGATCAGCTCAACTTCATTTGTAGGGAGAAAAACTCCTGTTATTTTGGCATCTGTCTATGAAGCCATG 2490 43.78 MFSNLSIFIFIFIFLSPETSTPSAAADYHFEACQRRMSCGDNQTIQYPFYIHNRQDPFCGYPGFKLKCHQNGHPILRLAGRDFSVRRISYENHFLRLSNHAILTASECSPLIRNLSVLPNEGFHLAAGQGGICDREESQEEAEENGLVVEWTAGECKFCNSSGGFCGFDSSTHLFKCYCRDRPHAFHCTPPPPVALPLAWNDSRHPLCPSFECGNLGLIGFPFNNVSLTNCGFYTVKNCFGQPKIQLSREKELWFDVVAISQANVIHINDSELQKQINARNCSILDDLALPTSPLTSLSTDNNLTLYKCTDTPKDAFPLFVSSFSCSGYYTYLNTSVSPNCSSSKSKFLVPVRPVGRNNSAVEFTSNFQLQVTISLRCQQCFHSGGQCSDTRGYFVCKDGNTKIRKDKRNILWIALGAGFSGVILLVLLFALWYRRRSRAAPNIITRNLSCEPYSKFDLDDGGGVCFEVPVFSYVELEAATNKFDRDKELGDGGFGTVYHGKLHDGREVAVKRLYQHNYRRVEQFMNEVKILTRLRHKNLVSLYGCTSRRSRELLLVYEFVPNGTVADHLHGEQASSSLLTWPIRMNIAIETASALVYLHASDIIHRDVKTTNILLDNNFAVKVADFGISRLFPNDVSHVSTAPQGTPGYVDPEYYQCYQLTTKSDVYSFGVVLIELISSMPAVDITRHRHEINLSNLAVNKILRQEIDELIDPCLGYQSDKNVRRMIMAVAWLAFLCLQQDKERRPTMEEALESLKRIESGEESENLQDNSALLKSFDPSPSPEYDEIQLLKNKRQQLSPTSVADKWISSTSFVGRKTPVILASVYEAM 830
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 34430509 34436426 + ClCG05G022530.1 Cla05g02281 273771

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g02281 830 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 10 124 IPR044652 -
Cla05g02281 830 ProSiteProfiles Protein kinase domain profile. 484 759 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla05g02281 830 Pfam Wall-associated receptor kinase C-terminal 135 181 IPR032872 -
Cla05g02281 830 CDD STKc_IRAK 490 759 - -
Cla05g02281 830 Pfam Wall-associated receptor kinase galacturonan-binding 33 98 IPR025287 GO:0030247
Cla05g02281 830 SUPERFAMILY Protein kinase-like (PK-like) 469 785 IPR011009 -
Cla05g02281 830 ProSitePatterns Serine/Threonine protein kinases active-site signature. 604 616 IPR008271 GO:0004672|GO:0006468
Cla05g02281 830 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 200 810 - -
Cla05g02281 830 ProSitePatterns Protein kinases ATP-binding region signature. 490 512 IPR017441 GO:0005524
Cla05g02281 830 Pfam Protein kinase domain 485 754 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla05g02281 830 Gene3D Phosphorylase Kinase; domain 1 463 560 - -
Cla05g02281 830 Gene3D Transferase(Phosphotransferase) domain 1 561 780 - -
Cla05g02281 830 SMART serkin_6 484 759 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla05g02281 830 MobiDBLite consensus disorder prediction 760 782 - -
Cla05g02281 830 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 10 124 - -
Cla05g02281 830 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 200 810 IPR044652 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g02281 - - - bhj:120081441 1118.99
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g02281 Cla-Chr5:34430509 Cla11g00744 Cla-Chr11:10625130 2.02E-147 dispersed
Cla04g01076 Cla-Chr4:25908676 Cla05g02281 Cla-Chr5:34430509 1.44E-13 wgd
Cla05g02281 Cla-Chr5:34430509 Cla06g01453 Cla-Chr6:28092258 1.27E-12 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g347 . . . . . . . . . Cmo18g01013 . Cma18g01002 . Car18g00924 . . . Bhi07g01296 . . . . . . Cla05g02281 . . . . . . . . . . Lsi04g00234 Csa05g02634 . Cme10g00237 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007318 0 3 0 0 0 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 1 2 1 0 30
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80590 PF00069 Pkinase 2.20E-49 CL0016 Cla PK