Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g02282 ATGGCTTCCAGAGAAGGGAGACGCCATCATCATCATCACCATCATCAGAATCTGGTGCCGCTTGCTGCTTTGATCAGTAAAGAGGTGAGGAGCGAGAGATTGGAGAAACCGACTGTAAGATATGGGAATGCAGCGCAGTCTAGAAAGGGGGAAGATTATTTTCTTATGAAAACTGATTGTCAGCGAGTTCCCGGGAACCCTTCATCCACTTTCTCTGTATTTGCTTTTTTCATGTTGATCACTATTTGCTTCTACTGCCTTCAGATATTTGATGGACACAATGGAAATGCTGCAGCAATTTACACGAGGGAACATTTGTTGAGTCATGTCTTGGGTGCACTTCCCCGTGGCCTCGGGCAGGAGGAGTGGCTTCAAGCTCTACCACGAGCATTGGTTGCTGGATTTGTGAAGACAGACAAGGAGTTTCAGAGCAGAGGTGAAACTTCTGGAACTACAGCTACGTTTGTGATCATTGATGGATGGACGGTGACAGTAGCATCAGTTGGAGATTCCCGTTGCATTTTGGATACTCAAGGTGGTGCTGTCTCTGCTTTAACGGTTGATCATCGGCTTGAAGAGAATGTTGAAGAGAGAGAACGTGTGACTGCAAGCGGTGGGGAAATTGGAAGATTAAGCATCGTTGGTGGTGCTGAGATCGGCCCACTCCGTTGTTGGCCTGGAGGCTTATGCCTTTCTCGATCCATTGGAGATATGGATGTTGGAGAGTTTATAGTTCCAATTCCATTCGTGAAACAAGTAAAGTTATCAAAGGCAGGCGGGAGGCTTATAATTGCTTCTGATGGCATCTGGGATGCTTTATCATCAGATATGGCTGCAAAGTCCTGCCGTGGACTACCGGCAGAGCTTGCTGCTAGGCAAGTTGTGAAGGAAGCCTTAAGAACAAGAGGGTTGAAAGATGATACAACCTGCATAGTTGTAGACATAATTCCTCCTGATAATTCAGCACAGTCTTCCCCTCTTCCAAAGAAACAAAGCGTACTGAAATCTCTATTATTCAGGAAAAAGTCTCACAGTTCTAATAAGCTATCAAAGAGGCTTTCAGCTATCGGTTTCGTGGAAGAATTATTCGAAGACGGCTCCGCCATGCTGGCAGAAAGGTATAGGTTTGAATGTAGTAATTTTCGTCGCACTGCAATCCCAAGTTTGCTCACCGGAGAGATGCTTGGAACAGTAGAGTTGAGTGGATCTGGACATGGCACGCCCAGCCTGTTCACTTGTGCTGTATGTCAAGTAGATCTTGCTCCCAGTGAGGGCATCTCTGTTCATGCTGGTTCCATCTTCTCCACCAGCTCAAAGCCATGGCAAGGGCCTTTCCTTTGTGCCGATTGTCGAAACAAGAAGGACGCCATGGAAGGAAAACGTCCCAGCGGGGTAAGAGTGGCGTAG 1407 46.91 MASREGRRHHHHHHHQNLVPLAALISKEVRSERLEKPTVRYGNAAQSRKGEDYFLMKTDCQRVPGNPSSTFSVFAFFMLITICFYCLQIFDGHNGNAAAIYTREHLLSHVLGALPRGLGQEEWLQALPRALVAGFVKTDKEFQSRGETSGTTATFVIIDGWTVTVASVGDSRCILDTQGGAVSALTVDHRLEENVEERERVTASGGEIGRLSIVGGAEIGPLRCWPGGLCLSRSIGDMDVGEFIVPIPFVKQVKLSKAGGRLIIASDGIWDALSSDMAAKSCRGLPAELAARQVVKEALRTRGLKDDTTCIVVDIIPPDNSAQSSPLPKKQSVLKSLLFRKKSHSSNKLSKRLSAIGFVEELFEDGSAMLAERYRFECSNFRRTAIPSLLTGEMLGTVELSGSGHGTPSLFTCAVCQVDLAPSEGISVHAGSIFSTSSKPWQGPFLCADCRNKKDAMEGKRPSGVRVA 468
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 34442186 34445933 + ClCG05G022540.1 Cla05g02282 273772
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g02282 468 PANTHER PROTEIN PHOSPHATASE 2C 15-RELATED 389 468 - -
Cla05g02282 468 PANTHER PROTEIN PHOSPHATASE 2C 15-RELATED 9 374 - -
Cla05g02282 468 Pfam Protein phosphatase 2C 86 300 IPR001932 -
Cla05g02282 468 SUPERFAMILY PP2C-like 47 315 IPR036457 -
Cla05g02282 468 SMART PP2C_4 30 313 IPR001932 -
Cla05g02282 468 ProSiteProfiles PPM-type phosphatase domain profile. 33 315 IPR001932 -
Cla05g02282 468 CDD PP2Cc 70 315 IPR001932 -
Cla05g02282 468 Gene3D - 47 322 IPR036457 -
Cla05g02282 468 SMART PP2C_SIG_2 68 315 IPR001932 -
Cla05g02282 468 PANTHER ALPHABET, ISOFORM E-RELATED 389 468 - -
Cla05g02282 468 PANTHER ALPHABET, ISOFORM E-RELATED 9 374 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g02028 Cla-Chr5:32011675 Cla05g02282 Cla-Chr5:34442186 3.23E-158 dispersed
Cla05g02282 Cla-Chr5:34442186 Cla11g00810 Cla-Chr11:12099219 6.85E-25 dispersed
Cla05g02282 Cla-Chr5:34442186 Cla07g00237 Cla-Chr7:2622852 2.16E-22 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g02282 - - csv:101216777 794.653