Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g02297 ATGAGAATGAGTTGCAATGGGTGTCGGATTCTTCGTAAAGGATGTAGCGATGACTGTATAATTAGACCTTGTCTTCAATGGATACCCTCCGCCGATTCTCAAGCCAACGCCACCATTTTTCTCGCTAAATTTTACGGCCGCGCCGGCCTCTTCAACCTCATCACCGCCGCCGCCCAACACCTCCGCCCTGCCATTTTCAAGTCGTTGCTGTACGAGGCGTGCGGTCGGATGGTGAATCCCGTGTACGGTTCTGTCGGATTACTCTGCTCCGGCGACTGGGAACGGTGTCAGGCCGCCGTCGACGCTGTGTTGAACGGGTCCATGAACGTCGAACCCGAAGCGCCGCCGTCAAACAACGCCAACCTTTCCCTCAAATGCTGCGACATTCGCCATGTCTGTAACGACCCCAATTTGGCTGCTTCCGGCGAGCTTCTCAAGGTCAAGGCTCGGAGCCGGTTCAAGAAACCCGACCATCGAACCAAACCAAAACCCGAATCGGTTCCTGAATTAGGAATTGGGCCTAGTGTTGAGGAACCGGGTCGGGTTTTGAGAAATGGAAGCCGGTTTGAGAAGGGGGACGTTGAGCTGGAATTGACTCTTAAATCGGCTCAGTAA 615 54.15 MRMSCNGCRILRKGCSDDCIIRPCLQWIPSADSQANATIFLAKFYGRAGLFNLITAAAQHLRPAIFKSLLYEACGRMVNPVYGSVGLLCSGDWERCQAAVDAVLNGSMNVEPEAPPSNNANLSLKCCDIRHVCNDPNLAASGELLKVKARSRFKKPDHRTKPKPESVPELGIGPSVEEPGRVLRNGSRFEKGDVELELTLKSAQ 204
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 34577729 34579654 + ClCG05G022700.1 Cla05g02297 273787
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g02297 204 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 1 165 - -
Cla05g02297 204 Pfam Lateral organ boundaries (LOB) domain 4 102 IPR004883 -
Cla05g02297 204 ProSiteProfiles LOB domain profile. 3 109 IPR004883 -
Cla05g02297 204 MobiDBLite consensus disorder prediction 151 186 - -
Cla05g02297 204 PANTHER LOB DOMAIN-CONTAINING PROTEIN 41-LIKE 1 165 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g01250 Cla-Chr5:14582922 Cla05g02297 Cla-Chr5:34577729 9.80E-67 dispersed
Cla05g02099 Cla-Chr5:32586418 Cla05g02297 Cla-Chr5:34577729 3.73E-15 dispersed
Cla05g02297 Cla-Chr5:34577729 Cla09g02200 Cla-Chr9:39611639 1.86E-09 dispersed
Cla05g02297 Cla-Chr5:34577729 Cla06g01470 Cla-Chr6:28260719 1.24E-66 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61158 PF03195 LOB 5.90E-23 No_clan Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g02297 - - csv:101212446 378.252