Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g02298 ATGACGACAAGGAAAAGTGTGGAGAAAACAGCAGAGGGAGGCAAGACTGCCAGAGCCTGCGATAGCTGTATTAGCAAGCGGGCTCGGTGGTACTGTGCTGCCGATGATGCTTTTCTGTGCCAAGCTTGTGATGCTTCGGTCCACTCTGCCAACTCCTTGGCTCGTAGGCACGAGCGAGTTCGTCTTCAAACTGCCTCTTTCAGACCCTCTTCAGACAACTCTGCTGCCTCATGGCACCAGGGCTTCACCAAAAAGCCACGCTCGCCTCGAATGGGAAAGACTGCTCCAGCAAGGAAGCCATTTCCTCAGGTACCAGAGGTGAGTGCTAAAGAAGAAACTGAAGATCAAGAACAGCTTCTCCTTCATAGAGTTCCTGTATTGGGAGCCGATTCAAAAGATGGTAATTTGGCTAGTTTTGTTGGGGAAAAAGAAAGCTCAAATGGCTATCTCTCATACGATATGGATCCTGCTGAATTTGCAGCTGATGTTGAGAGTTTGTTGGGGAACTCGCTTGATAATGAGTGCTTTGATATGGAAGAACTGGGGCTGGCGGCTTCCAAAGACCACTCAATGACAAACGATGATCATTCTTTAAACAGCTGCGAACTTATTAAGATCGAAGCAGATGAGGTAGAGGAATTAACTCCAATGCTTGGCACAGAAGCCGATACAATGAGGGAGCCATTTGAGCTGAACTTTATGGACTTCAGCAGCAATCCGACAACGTGCAGTGAGGAAGAGAAGGTGATGATGGAAGTCATGGCAGCTGTGAAGAACGGTGAAGTTGAGATGGAAGAGACGAAGATTGTTAAAAACAAAAAGAAAATATCATTGAGTTTGGATAGTGAAGCAGTGATTATAGCTTGGGGGAGCAGAGGAACTCCATGGACATCCGGTGATCGACCAAATCTCGACCTCGATTATTACTGGCCGGACTACATGGGTGTGTGTGAGAGTGATTATTACTATCAAACTTACGGGGAGTTTGGCGGCGGAATTGGCCGACAAGCAGTGGCTGGAGTCGAAGGAGAGAGAGAAGCACGAGTATCGAGATACAGAGAGAAGAGAAGGACGAGATTATTTGCAAAGAAAATAAGATATGAAGTTCGAAAATTGAATGCAGAGAAGAGACCAAGAATGAAAGGGAGGTTTGTGAAGAGATCGTCTTGCTTTGCGCCACCACCTTTGCCTCTGATTAATTAA 1203 46.55 MTTRKSVEKTAEGGKTARACDSCISKRARWYCAADDAFLCQACDASVHSANSLARRHERVRLQTASFRPSSDNSAASWHQGFTKKPRSPRMGKTAPARKPFPQVPEVSAKEETEDQEQLLLHRVPVLGADSKDGNLASFVGEKESSNGYLSYDMDPAEFAADVESLLGNSLDNECFDMEELGLAASKDHSMTNDDHSLNSCELIKIEADEVEELTPMLGTEADTMREPFELNFMDFSSNPTTCSEEEKVMMEVMAAVKNGEVEMEETKIVKNKKKISLSLDSEAVIIAWGSRGTPWTSGDRPNLDLDYYWPDYMGVCESDYYYQTYGEFGGGIGRQAVAGVEGEREARVSRYREKRRTRLFAKKIRYEVRKLNAEKRPRMKGRFVKRSSCFAPPPLPLIN 400
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 34581753 34587349 - ClCG05G022710.1 Cla05g02298 273788

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g02298 400 PANTHER CCT MOTIF FAMILY PROTEIN, EXPRESSED 1 393 - -
Cla05g02298 400 ProSiteProfiles Zinc finger B-box type profile. 15 62 IPR000315 GO:0008270
Cla05g02298 400 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 6 1 393 - -
Cla05g02298 400 MobiDBLite consensus disorder prediction 65 111 - -
Cla05g02298 400 CDD Bbox1_BBX-like 19 62 - -
Cla05g02298 400 Pfam CCT motif 345 387 IPR010402 GO:0005515
Cla05g02298 400 MobiDBLite consensus disorder prediction 65 81 - -
Cla05g02298 400 Pfam B-box zinc finger 17 60 IPR000315 GO:0008270
Cla05g02298 400 ProSiteProfiles CCT domain profile. 345 387 IPR010402 GO:0005515
Cla05g02298 400 SMART bboxneu5 15 62 IPR000315 GO:0008270
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g02298 - - - csv:101212689 750.74
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g02298 Cla-Chr5:34581753 Cla09g01904 Cla-Chr9:36711477 3.31E-14 dispersed
Cla09g01585 Cla-Chr9:31623402 Cla05g02298 Cla-Chr5:34581753 2.68E-07 transposed
Cla11g01147 Cla-Chr11:23917262 Cla05g02298 Cla-Chr5:34581753 4.63E-18 transposed
Cla05g02298 Cla-Chr5:34581753 Cla06g01471 Cla-Chr6:28266523 1.77E-80 wgd
Cla05g02298 Cla-Chr5:34581753 Cla08g00558 Cla-Chr8:16932145 2.52E-99 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g308 . . . . . Bpe10g00936 Bma14g01712 Bma15g00088 Cmo04g01578 Cmo18g01030 . Cma18g01020 Car04g01559 . Sed08g0353 Cpe09g00303 Cpe01g01788 Bhi07g01322 Tan04g0850 Cmetu03g1640 Lac13g0498 Hepe01g1190 . . Cla05g02298 . . Cco05g2536 . . . . . Cone13ag0287 Cone19ag0279 Lsi04g00253 Csa05g02613 Chy10g01148 Cme10g00258 Blo06g00962 Blo11g00848 Bda07g01539 . Bpe11g01703 . . Bma06g01024 . Cmo04g02148 . Cma04g02049 . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002023 2 2 2 3 2 2 4 2 2 2 2 2 4 2 2 4 2 2 2 2 2 2 1 2 1 2 2 4 2 1 66
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61159 PF00643 zf-B_box 2.00E-07 No_clan Cla TF