Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g02307 ATGAAGATTTTTGTCAAGACTCTCAAGGGCTCGCACTTCGAAATCGAAGTTCAGCCTGCAGATACGGTTGCTGATGTGAAGAAAAATATAGAAACTGTTCAGGGTGCTGATGTTTACCCTGCTGCACAGCAGATGCTTATCCATCAAGGGAAAGTCCTTAAAGATAGCACAACACTGGAGGAAAATAAAGTTGCAGAAAATAGTTTTATTGTAATAATGTTAACAAAGAATAAAAGTCCATCGGGTGGGACATCTTCTACCACACAAGCTGCGCCAGTATCAAAGGTAAGGAATAACAATTCTATGTTTTACTGGCTAGGGGCACCACAGAGCACTGCCCCTGCGCATGCTGCCACTCCAGTGTCAACTTCTGAAGTTCCTCTACCAACTTCAGCACCGCCTGCTAATGTTACTGATTCTTCTCCTCCTGCTCCTGCGCCGGCTCCTGCTCCCGCTCCCGCTGCAGCCCCAGCAACCACTGTTTTGCCAGAATCGGATGTCTACAGCCAAGCAGCCTCTAACCTGGTTGCTGGTAGTAACTTGGAGGAGACTATCCAACAGATTCTTGACATGGGCGAAGGCGTTTGGGATAGGGACACTGTTGTTCGAGCTCTTCGTGCTGCTTACAATAATCCGGAAAGGGCTGTTGATTACCTTTATTCTGGAATACCTGAACAAGTTGAAGCCCCACCTGCTCGAGTTCCGTCAACTGTGCAAGCAACCAACCCTTCTGCTCAACCTGCACAGCCAGCCCAACCTGCATCTGTGCCATCAACTGGCCCAAATGCTAATCCATTAGATCTCTTTCCTCAGGGTGTGCCTAACATAGCTTCTGGAGCTGCTGGTTCCGGCAGTCTTGATTTTCTACGAAATAGTCCTCAGTTCCAAGCTTTGCGAGCAATGGTGCGAGCTAACCCTCAGATACTCCAGCCCATGCTTCAAGAGTTGGGTAAACAAAATCCTCAGCTGATTAGGCTTATTCAAGATCATCAACCTGACTTCCTCCGCTTGATTAATGAGCCCCTTGAAGGAGAAGGGAATATACTTGGGCAGCTTGCTGAGGCTATGCCACAGGCTATAACTGTAACCCCAGAGGAGCGGGAAGCCATTCAACGGCTTGAGGATATGGGTTTCGACAGAGGTCTAGTTGTGGAGGTTTTCTTCGCGTGCAACAAAAACGAAGAAATGGCTGCCAACTACCTTTTAGATCATATTCACGAATTTGAGGGTAATCAGAATTAG 1242 47.58 MKIFVKTLKGSHFEIEVQPADTVADVKKNIETVQGADVYPAAQQMLIHQGKVLKDSTTLEENKVAENSFIVIMLTKNKSPSGGTSSTTQAAPVSKVRNNNSMFYWLGAPQSTAPAHAATPVSTSEVPLPTSAPPANVTDSSPPAPAPAPAPAPAAAPATTVLPESDVYSQAASNLVAGSNLEETIQQILDMGEGVWDRDTVVRALRAAYNNPERAVDYLYSGIPEQVEAPPARVPSTVQATNPSAQPAQPAQPASVPSTGPNANPLDLFPQGVPNIASGAAGSGSLDFLRNSPQFQALRAMVRANPQILQPMLQELGKQNPQLIRLIQDHQPDFLRLINEPLEGEGNILGQLAEAMPQAITVTPEEREAIQRLEDMGFDRGLVVEVFFACNKNEEMAANYLLDHIHEFEGNQN 413
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 34675892 34684038 + ClCG05G022800.2 Cla05g02307 273797

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g02307 413 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 363 404 IPR015940 -
Cla05g02307 413 SMART ubq_7 1 75 IPR000626 GO:0005515
Cla05g02307 413 MobiDBLite consensus disorder prediction 114 158 - -
Cla05g02307 413 Pfam XPC-binding domain 286 341 IPR015360 GO:0003684|GO:0006289|GO:0043161
Cla05g02307 413 SMART CBM 284 327 IPR006636 -
Cla05g02307 413 SUPERFAMILY Ubiquitin-like 1 81 IPR029071 -
Cla05g02307 413 SMART uba_6 181 221 IPR015940 -
Cla05g02307 413 SMART uba_6 366 403 IPR015940 -
Cla05g02307 413 SUPERFAMILY UBA-like 346 408 IPR009060 GO:0005515
Cla05g02307 413 Gene3D - 276 341 IPR036353 GO:0003684|GO:0006289|GO:0043161
Cla05g02307 413 TIGRFAM rad23: UV excision repair protein Rad23 1 409 IPR004806 GO:0006289
Cla05g02307 413 PANTHER UV EXCISION REPAIR PROTEIN RAD23-RELATED 1 410 - -
Cla05g02307 413 Pfam UBA/TS-N domain 181 219 IPR015940 -
Cla05g02307 413 Pfam UBA/TS-N domain 366 401 IPR015940 -
Cla05g02307 413 ProSiteProfiles Ubiquitin domain profile. 1 79 IPR000626 GO:0005515
Cla05g02307 413 CDD UBA1_Rad23_plant 175 224 - -
Cla05g02307 413 MobiDBLite consensus disorder prediction 115 135 - -
Cla05g02307 413 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 179 222 IPR015940 -
Cla05g02307 413 PANTHER UV EXCISION REPAIR PROTEIN RAD23 1 410 - -
Cla05g02307 413 Gene3D - 1 80 - -
Cla05g02307 413 Gene3D - 358 405 - -
Cla05g02307 413 Pfam Ubiquitin family 3 76 IPR000626 GO:0005515
Cla05g02307 413 MobiDBLite consensus disorder prediction 232 268 - -
Cla05g02307 413 MobiDBLite consensus disorder prediction 136 156 - -
Cla05g02307 413 SUPERFAMILY UBA-like 166 225 IPR009060 GO:0005515
Cla05g02307 413 Gene3D - 174 224 - -
Cla05g02307 413 CDD Ubl_Rad23 1 74 - -
Cla05g02307 413 PRINTS DNA repair protein Rad23 signature 360 376 IPR004806 GO:0006289
Cla05g02307 413 PRINTS DNA repair protein Rad23 signature 392 407 IPR004806 GO:0006289
Cla05g02307 413 PRINTS DNA repair protein Rad23 signature 377 391 IPR004806 GO:0006289
Cla05g02307 413 PRINTS DNA repair protein Rad23 signature 312 334 IPR004806 GO:0006289
Cla05g02307 413 SUPERFAMILY XPC-binding domain 282 347 IPR036353 GO:0003684|GO:0006289|GO:0043161
Cla05g02307 413 MobiDBLite consensus disorder prediction 235 265 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g02307 K10839 RAD23, HR23; UV excision repair protein RAD23 - csv:101220491 682.945
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g02307 Cla-Chr5:34675892 Cla10g01222 Cla-Chr10:26862797 5.38E-129 dispersed
Cla05g02307 Cla-Chr5:34675892 Cla08g01745 Cla-Chr8:29940110 1.03E-07 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g298 . . . . . Bpe10g00939 Bma14g01707 Bma15g00085 . Cmo18g01038 . Cma18g01028 . Car18g00948 Sed06g1882 Cpe09g00295 . Bhi07g01334 Tan04g0868 Cmetu10g1073 Lac13g0486 Hepe01g1200 . . Cla05g02307 . Cec05g2503 Cco05g2545 . . Cre05g2454 Cone13ag0836 Cone19ag0843 . . Lsi04g00262 Csa05g02604 Chy10g01139 Cme10g00268 . Blo11g00839 Bda07g01534 . Bpe11g01698 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004990 1 1 1 2 2 0 2 1 1 1 1 0 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 3 2 2 41