Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g02327 ATGGATTTCCTTCATAATTTTCTGGATATTCGAGTAGGAATGGATTTGAGGCACTATGCTGATGCTTTGGATCAAGAACGCCGCAAAATTCAGGTCTTCCAGCGAGAACTTCCCCTCTGTTTGGAGCTTGTCACCAGAGCTATTGAATCTTGCCGGCAACAGTTATCTGGAGTGTCGACAGACAGCTCTGAACATACTTCAAGCGATGGCCCTGTTTTGGAGGAATTTATTCCGATTAACAAACCTTCTGTGAATTCCCATTTTGAAATTGAAGAAGATGAACAATCAAAACCAGAGAAAATTGAATTGGGTCGATCGGATTGGCTTAAATCGGCTCAGCTTTGGAATCAGTCACCGGATCCTCCCGTTACAGAGGATGTTGCTAAGGAAACGACGTCATCGGTTGTTGAGGTCAAAAAGAATGTCGGTGGCGGTGCTTTTCAACCATTTCAGAAGGAGAAAACAACTCCATTGAAAACAGAGTCAGTGGTCGTCGGTAAATCGGACGGTTCTTCGCCAATTCCGGAGGCGACAACGAGTTCGACGGCGGAAACCGCCTCCAAAGGTGGCGGTGGAACCAGTAAACGAGAAGATAAAGAGTCCCAGACTCAAAGAAAACAGAGGCGGTGCTGGTCGTCGGAGTTACACCGGCGATTCGTTCACGCCCTTCAACAACTTGGCGGTCCTCACGTTGCTACACCAAAACAAATCCGAGAGTTAATGAAGGTCGATGGACTCACTAACGACGAAGTCAAAAGCCATTTACAGAAATACCGATTGCACGCAAGAAGGCCAACAAATTCTGCAATGCAAGACAGCGGCAGCTCATCGGCGCCGCAGCAATTCGTGGTGGTCGGAAGCATATGGGTGCCGCCACCGCCTCCACCGAAATACACGGTGGCGACGGCAGCGAAAGCGAGAAATGGGATTTATGCTCCGGTGGCGACGGCGGTGCGACGGCAGACGACGGCAGAGGAAGGGAAGGCGAGCCACAGCGGGGGAGTGGTTCATTCGAATTCGCCGGCGACGTCTTCCTGCACCCACACCACCACAACCTCGCCGTCGGCGGCGTAG 1074 51.02 MDFLHNFLDIRVGMDLRHYADALDQERRKIQVFQRELPLCLELVTRAIESCRQQLSGVSTDSSEHTSSDGPVLEEFIPINKPSVNSHFEIEEDEQSKPEKIELGRSDWLKSAQLWNQSPDPPVTEDVAKETTSSVVEVKKNVGGGAFQPFQKEKTTPLKTESVVVGKSDGSSPIPEATTSSTAETASKGGGGTSKREDKESQTQRKQRRCWSSELHRRFVHALQQLGGPHVATPKQIRELMKVDGLTNDEVKSHLQKYRLHARRPTNSAMQDSGSSSAPQQFVVVGSIWVPPPPPPKYTVATAAKARNGIYAPVATAVRRQTTAEEGKASHSGGVVHSNSPATSSCTHTTTTSPSAA 357
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 34851069 34853015 - ClCG05G022990.1 Cla05g02327 273817

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g02327 357 MobiDBLite consensus disorder prediction 159 211 - -
Cla05g02327 357 Gene3D - 205 262 - -
Cla05g02327 357 MobiDBLite consensus disorder prediction 159 189 - -
Cla05g02327 357 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 206 261 IPR006447 GO:0003677
Cla05g02327 357 PANTHER TRANSCRIPTION FACTOR HHO2 15 351 - -
Cla05g02327 357 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 203 263 IPR017930 -
Cla05g02327 357 MobiDBLite consensus disorder prediction 321 357 - -
Cla05g02327 357 Coils Coil 16 36 - -
Cla05g02327 357 SUPERFAMILY Homeodomain-like 203 263 IPR009057 -
Cla05g02327 357 MobiDBLite consensus disorder prediction 333 357 - -
Cla05g02327 357 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 15 351 IPR044787 GO:0003700|GO:0006355
Cla05g02327 357 MobiDBLite consensus disorder prediction 191 211 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g02327 - - - csv:101203539 526.554
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g02327 Cla-Chr5:34851069 Cla06g01045 Cla-Chr6:22629347 5.31E-53 dispersed
Cla05g02327 Cla-Chr5:34851069 Cla08g00529 Cla-Chr8:16147393 7.97E-105 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g270 Blo01g00489 Blo16g01054 Bda01g02090 . Bpe13g01332 . Bma14g01699 . . Cmo18g01059 . Cma18g01041 . Car18g00967 Sed06g1866 Cpe09g00276 . Bhi07g01367 Tan04g0896 Cmetu10g0277 Lac13g0461 Hepe01g1219 . . Cla05g02327 Cam05g2500 Cec05g2524 Cco05g2566 Clacu05g2494 Cmu05g2357 Cre05g2473 Cone13ag0852 Cone19ag0853 Cone6ag0464 Cone9ag0476 Lsi04g00286 Csa05g02583 Chy10g01118 Cme10g00288 . Blo11g00832 Bda07g01528 . . Bpe02g02281 . Bma06g00768 . . . . . . Car15g00854 Cpe13g00409 . . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cla09g02227 . 16 176 G2-like Transcription Factor Family AT3G24120 59.8 6.4e-42 168.3
Cla02g01833 . 22 192 G2-like Transcription Factor Family AT3G24120 54.6 4.6e-40 162.2
Cla07g00216 . 4 152 G2-like Transcription Factor Family AT3G24120 54.9 1.0e-39 161.0
Cla05g01126 . 246 446 G2-like Transcription Factor Family AT5G16560 56.5 8.3e-45 178.3
Cla09g01095 . 200 404 G2-like Transcription Factor Family AT5G16560 51.7 7.3e-41 165.2
Cla05g01991 CCT 1 167 G2-like Transcription Factor Family AT5G42630 58.3 7.6e-40 161.0
Cla08g01528 CCT 50 136 G2-like Transcription Factor Family AT5G42630 83.9 1.3e-36 150.2
Cla05g02327 . 19 256 G2-like Transcription Factor Family AT1G25550 55.4 5.7e-53 204.9
Cla08g00529 . 20 258 G2-like Transcription Factor Family AT1G25550 54.1 6.3e-52 201.4
Cla03g00126 CCT 183 451 G2-like Transcription Factor Family AT3G46640 51.7 3.3e-60 229.2
Cla04g00590 . 1 301 G2-like Transcription Factor Family AT5G05090 57.1 4.3e-74 275.0
Cla10g01569 . 1 283 G2-like Transcription Factor Family AT5G05090 53.8 7.2e-69 257.7
Cla09g02227 . 16 176 G2-like Transcription Factor Family AT3G24120 59.8 6.4e-42 168.3
Cla02g01833 . 22 192 G2-like Transcription Factor Family AT3G24120 54.6 4.6e-40 162.2
Cla07g00216 . 4 152 G2-like Transcription Factor Family AT3G24120 54.9 1.0e-39 161.0
Cla11g00689 . 2 228 G2-like Transcription Factor Family AT1G69580 56.0 9.4e-50 194.5
Cla09g02227 . 1 389 G2-like Transcription Factor Family AT1G79430 53.4 1.8e-83 306.6
Cla02g01833 . 1 181 G2-like Transcription Factor Family AT1G79430 85.8 7.6e-74 274.6
Cla04g00590 . 1 301 G2-like Transcription Factor Family AT3G10760 63.0 1.3e-91 333.6
Cla10g01569 . 1 283 G2-like Transcription Factor Family AT3G10760 57.8 5.4e-82 301.6
Cla04g00590 . 1 203 G2-like Transcription Factor Family AT2G40970 60.2 2.5e-60 229.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013799 0 1 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 2 1 0 25
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61161 None None None None Cla TF