Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g02328 ATGGACGGTATTTGCATTGACGAAAGCACTTCCACTGAGTCTCAATCCCCGGTGGTTAAATCTCCGCCGCCGGAGACCAGTCTCTGCCGCGTCGGAAGTGGCGTCACCAGTGTAGTTCTCGATTCCGACTCCAGCGGCGGCGGAGTTGAAGCAGAGTCCCGGAAACTACCATCGTCTCGTTACAAAGGAGTGGTCCCACAGCCGAACGGCCGATGGGGGGCCCAGATTTACGAGAAACACCAAAGAGTATGGCTGGGAACGTTCAACGAAGAGGATGAAGCAGCACGTGCCTACGACGTGGCTGCCCAACGTTTCCGTGGCCGTGACGCGGTTACCAATTTCAAACCTTTAGCACACGGCGGTGAAGAAGACGACGCGGTTTCTGCCTTCCTCAACTCCCATTCCAAGGCGGAGATCGTCGACATGCTACGTAAGCATACTTACTTAGACGAACTTCACCAAAGCAAACGAAACGCCGGGTTATCCGGTTGGGATCGGAAACGAAACCGATCGTTACCCGGGTTAGATACGGACCCGGAAACCTCTCGTGAACTTCTATTCGAAAAAGCCGTTACCCCAAGCGATGTGGGGAAATTGAACCGTTTGGTCATCCCGAAACAACACGCTGAAAAGAATTTCCCTCTCCAAACCGGTTCGACCGCTTCCTCCAAAGGTCTTTTGTTGAACTTCGAAGATGGAGGAGGTAAAGTTTGGCGGTTCAGGTACTCGTATTGGAACAGTAGCCAAAGCTATGTGCTGACCAAAGGATGGAGCCGGTTCGTGAAAGAAAAGAATTTGAAAGCCGGTGACATCGTTAGCTTCCTGAAATCGACCGGACAAGATAAACAGCTTTACATTGAATGGAAGGCACGAAAGACTTCTACTGCAACCGGGTCCGACATGAACCCGGTTCAGACCGTTAGACTGTTTGGAGTTGACATTATCAAAGTGTCGCCACATAGTGGGTGTAGTGAGAAGAGGAGGAGGGAATTGGAATTTCTCGCTTCACAATGTACCAAGAAACAAAGGATTGTGGGAGCAATGTAA 1047 50.91 MDGICIDESTSTESQSPVVKSPPPETSLCRVGSGVTSVVLDSDSSGGGVEAESRKLPSSRYKGVVPQPNGRWGAQIYEKHQRVWLGTFNEEDEAARAYDVAAQRFRGRDAVTNFKPLAHGGEEDDAVSAFLNSHSKAEIVDMLRKHTYLDELHQSKRNAGLSGWDRKRNRSLPGLDTDPETSRELLFEKAVTPSDVGKLNRLVIPKQHAEKNFPLQTGSTASSKGLLLNFEDGGGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDIVSFLKSTGQDKQLYIEWKARKTSTATGSDMNPVQTVRLFGVDIIKVSPHSGCSEKRRRELEFLASQCTKKQRIVGAM 348
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 34860451 34861497 - ClCG05G023000.1 Cla05g02328 273818
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g02328 348 SMART B3_2 187 292 IPR003340 GO:0003677
Cla05g02328 348 MobiDBLite consensus disorder prediction 1 30 - -
Cla05g02328 348 SUPERFAMILY DNA-binding domain 59 115 IPR016177 GO:0003677
Cla05g02328 348 Pfam B3 DNA binding domain 187 288 IPR003340 GO:0003677
Cla05g02328 348 Pfam AP2 domain 59 107 IPR001471 GO:0003700|GO:0006355
Cla05g02328 348 ProSiteProfiles B3 DNA-binding domain profile. 187 292 IPR003340 GO:0003677
Cla05g02328 348 Gene3D AP2/ERF domain 59 116 IPR036955 GO:0003700|GO:0006355
Cla05g02328 348 CDD B3_DNA 186 274 IPR003340 GO:0003677
Cla05g02328 348 CDD AP2 59 114 IPR001471 GO:0003700|GO:0006355
Cla05g02328 348 SMART rav1_2 60 121 IPR001471 GO:0003700|GO:0006355
Cla05g02328 348 SUPERFAMILY DNA-binding pseudobarrel domain 183 279 IPR015300 -
Cla05g02328 348 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 1 348 IPR044800 GO:0003700
Cla05g02328 348 MobiDBLite consensus disorder prediction 7 22 - -
Cla05g02328 348 PANTHER PROTEIN RAV1, PUTATIVE-RELATED 1 348 - -
Cla05g02328 348 ProSiteProfiles AP2/ERF domain profile. 60 115 IPR001471 GO:0003700|GO:0006355
Cla05g02328 348 Gene3D - 176 302 IPR015300 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla03g00943 Cla-Chr3:15722651 Cla05g02328 Cla-Chr5:34860451 3.18E-135 dispersed
Cla05g02328 Cla-Chr5:34860451 Cla06g01223 Cla-Chr6:25468459 9.67E-57 dispersed
Cla05g02328 Cla-Chr5:34860451 Cla01g00124 Cla-Chr1:1170541 2.36E-46 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61162 PF02362 B3 1.20E-27 CL0405 Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g02328 K09287 - csv:101203784 623.624