Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g02332 ATGTGTGGGGAGGATCAAGAAGAGGATCATCATCAACAACATCAAGGGGAGTGTTCACAAACAATTGAGAATATGTTTCAAGAACAGCTTCTTCTCCACCAACAACAACAGCTACAAAACAACAACAACACTGATCATCATATGATGTACGGAGGAGATCATCTTCATCATCATGGAATTGGAAGATCAGGGTTAATTTTTCCACCCGAAATCGTGTCGCCCATGCTGCAACCGTGGTCGTCGCTTAACCCGTTTATGATCCCTCCGCCACCGCCACCGCCGCCATCAACATCATTATCATGTTCATCATCATCCTATGGTAGTTTGTTTACCCGAAGACCACCTAATTGTCTTCAATTTGCTTACGATGGTCCTTCTTCGGCGGACCACCTAGGTCGAATCATATCGACCACACTCGGACCGGTGGTTCATCCAGGTTCCACGGCTCCCTTTGGGCTACAAGCTGAACTTGGCAAAATGAGTGCTCAAGAAATAATGGATGCTAAAGCTCTTGCAGCTTCTAAAAGCCATAGTGAAGCTGAGAGGAGAAGAAGAGAAAGAATCAACAACCATCTTGCGAAACTCAGAAGCTTACTCCCTAGTACCACTAAAACAGACAAAGCATCATTGTTAGCAGAAGTAATAGAACACGTGAAAGAGCTAAAACGGCAAACATCATTGATAGCAGAAACAAGTCCAATTCCAACAGAAGTTGATGAGGTAAGTGTAGATGATGCTTCAGAACAAGAGATGATGATGATAAGTAATGGATCAGCCAAATTTGTAATAAAGGCTTCTCTTTGTTGTGAAGACCGTTCTGACCTTCTCCCTGATCTCATTAAAACCCTCAAATCCTTACGTTTAACAACTCTTAAAGCTGAAATCACAACTCTTGGTGGTCGTTTAAGAAATGTGTTGTTTGTCACTGCTGACGAAGAACAACAACAACAAAATATTAGCTCTATTATTCAAGATGCCCTCAAAGCTGTCATTGAAAAAACTGCAGGGGATCATGATTCTTCTTCAGCAAATATCAAAAGACAAAGGACTACCACTACAAATAACATTAATATCCTTTAA 1080 41.48 MCGEDQEEDHHQQHQGECSQTIENMFQEQLLLHQQQQLQNNNNTDHHMMYGGDHLHHHGIGRSGLIFPPEIVSPMLQPWSSLNPFMIPPPPPPPPSTSLSCSSSSYGSLFTRRPPNCLQFAYDGPSSADHLGRIISTTLGPVVHPGSTAPFGLQAELGKMSAQEIMDAKALAASKSHSEAERRRRERINNHLAKLRSLLPSTTKTDKASLLAEVIEHVKELKRQTSLIAETSPIPTEVDEVSVDDASEQEMMMISNGSAKFVIKASLCCEDRSDLLPDLIKTLKSLRLTTLKAEITTLGGRLRNVLFVTADEEQQQQNISSIIQDALKAVIEKTAGDHDSSSANIKRQRTTTTNNINIL 359
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 34914819 34917488 - ClCG05G023040.1 Cla05g02332 273822
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g02332 359 Gene3D - 167 228 IPR036638 GO:0046983
Cla05g02332 359 PANTHER TRANSCRIPTION FACTOR BHLH30 73 356 - -
Cla05g02332 359 SMART finulus 178 227 IPR011598 GO:0046983
Cla05g02332 359 Pfam Helix-loop-helix DNA-binding domain 175 221 IPR011598 GO:0046983
Cla05g02332 359 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 172 221 IPR011598 GO:0046983
Cla05g02332 359 PANTHER TRANSCRIPTION FACTOR BHLH30 73 356 IPR045847 GO:0003700|GO:0006355
Cla05g02332 359 CDD bHLH_AtAIG1_like 167 244 - -
Cla05g02332 359 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 176 227 IPR036638 GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g02332 Cla-Chr5:34914819 Cla06g00960 Cla-Chr6:18618655 8.55E-89 dispersed
Cla05g02332 Cla-Chr5:34914819 Cla08g01166 Cla-Chr8:24533003 4.33E-36 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61164 PF00010 HLH 5.70E-13 No_clan Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g02332 - - csv:101214615 540.421