Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cla05g02332 | ATGTGTGGGGAGGATCAAGAAGAGGATCATCATCAACAACATCAAGGGGAGTGTTCACAAACAATTGAGAATATGTTTCAAGAACAGCTTCTTCTCCACCAACAACAACAGCTACAAAACAACAACAACACTGATCATCATATGATGTACGGAGGAGATCATCTTCATCATCATGGAATTGGAAGATCAGGGTTAATTTTTCCACCCGAAATCGTGTCGCCCATGCTGCAACCGTGGTCGTCGCTTAACCCGTTTATGATCCCTCCGCCACCGCCACCGCCGCCATCAACATCATTATCATGTTCATCATCATCCTATGGTAGTTTGTTTACCCGAAGACCACCTAATTGTCTTCAATTTGCTTACGATGGTCCTTCTTCGGCGGACCACCTAGGTCGAATCATATCGACCACACTCGGACCGGTGGTTCATCCAGGTTCCACGGCTCCCTTTGGGCTACAAGCTGAACTTGGCAAAATGAGTGCTCAAGAAATAATGGATGCTAAAGCTCTTGCAGCTTCTAAAAGCCATAGTGAAGCTGAGAGGAGAAGAAGAGAAAGAATCAACAACCATCTTGCGAAACTCAGAAGCTTACTCCCTAGTACCACTAAAACAGACAAAGCATCATTGTTAGCAGAAGTAATAGAACACGTGAAAGAGCTAAAACGGCAAACATCATTGATAGCAGAAACAAGTCCAATTCCAACAGAAGTTGATGAGGTAAGTGTAGATGATGCTTCAGAACAAGAGATGATGATGATAAGTAATGGATCAGCCAAATTTGTAATAAAGGCTTCTCTTTGTTGTGAAGACCGTTCTGACCTTCTCCCTGATCTCATTAAAACCCTCAAATCCTTACGTTTAACAACTCTTAAAGCTGAAATCACAACTCTTGGTGGTCGTTTAAGAAATGTGTTGTTTGTCACTGCTGACGAAGAACAACAACAACAAAATATTAGCTCTATTATTCAAGATGCCCTCAAAGCTGTCATTGAAAAAACTGCAGGGGATCATGATTCTTCTTCAGCAAATATCAAAAGACAAAGGACTACCACTACAAATAACATTAATATCCTTTAA | 1080 | 41.48 | MCGEDQEEDHHQQHQGECSQTIENMFQEQLLLHQQQQLQNNNNTDHHMMYGGDHLHHHGIGRSGLIFPPEIVSPMLQPWSSLNPFMIPPPPPPPPSTSLSCSSSSYGSLFTRRPPNCLQFAYDGPSSADHLGRIISTTLGPVVHPGSTAPFGLQAELGKMSAQEIMDAKALAASKSHSEAERRRRERINNHLAKLRSLLPSTTKTDKASLLAEVIEHVKELKRQTSLIAETSPIPTEVDEVSVDDASEQEMMMISNGSAKFVIKASLCCEDRSDLLPDLIKTLKSLRLTTLKAEITTLGGRLRNVLFVTADEEQQQQNISSIIQDALKAVIEKTAGDHDSSSANIKRQRTTTTNNINIL | 359 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 34914819 | 34917488 | - | ClCG05G023040.1 | Cla05g02332 | 273822 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cla05g02332 | 359 | Gene3D | - | 167 | 228 | IPR036638 | GO:0046983 | |
Cla05g02332 | 359 | PANTHER | TRANSCRIPTION FACTOR BHLH30 | 73 | 356 | - | - | |
Cla05g02332 | 359 | SMART | finulus | 178 | 227 | IPR011598 | GO:0046983 | |
Cla05g02332 | 359 | Pfam | Helix-loop-helix DNA-binding domain | 175 | 221 | IPR011598 | GO:0046983 | |
Cla05g02332 | 359 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 172 | 221 | IPR011598 | GO:0046983 | |
Cla05g02332 | 359 | PANTHER | TRANSCRIPTION FACTOR BHLH30 | 73 | 356 | IPR045847 | GO:0003700|GO:0006355 | |
Cla05g02332 | 359 | CDD | bHLH_AtAIG1_like | 167 | 244 | - | - | |
Cla05g02332 | 359 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 176 | 227 | IPR036638 | GO:0046983 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cla05g02332 | Cla-Chr5:34914819 | Cla06g00960 | Cla-Chr6:18618655 | 8.55E-89 | dispersed | |
Cla05g02332 | Cla-Chr5:34914819 | Cla08g01166 | Cla-Chr8:24533003 | 4.33E-36 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
61164 | PF00010 | HLH | 5.70E-13 | No_clan | Cla | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cla05g02332 | - | - | csv:101214615 | 540.421 |