Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g02336 ATGTGCTCTTCTTCTTCTTTTGCATCTACCTTCTCTTTATTCCTTACGAAGTCGCCGTCGATTTCCCGACGACGGAATGTTATTTATCCCAACTCCCATCTATTCCTCGGCCATCTCAGGCCCACTAGCTCTACATTTCGTATTACTGCCTCAATTACTGAAAGAGACCTCGAGCTCTCGTCTTGGTTTAATCCTGACCAACCCAATAACGACGACGCCTACGGTGGCTGGATATTTCTCAACTCTCCAACCAGCGTCGCAAAAACCGAGAAACGAGGGCTGCCTCGTTTCGTAATAGGGGTGGTTGGGACCTCGCTTGTTGTTTTGTTCGCCGTTATTGCTCAGATTTCACTATCAAGAAGAGGGTTTAAGTTTCAGTGGCGTACTCCCTTGAGATCATTAGAAGGGGTATGTAGTCACACCGAAAATGTAAGTGATCAAGGAAAAACAGTGGAGGTTAGTTTAACCAATGACGACCTACCGACTGAATCTGGTGCTGAGTCTATACCTGTTTCTAAGATTGATGACGCTGTTACTTCAGATTCTGGATATAAGCTTGAACGAGTTATAATCACTGTTCCTGTCGATTCTGCTCAAGATGAAGCTTTATCAATTTTGAAGAAACTTAAGGTGATTGAAGATGATATTGATGCTGGAGAGTTGTGTAGTAGAAGGGAATATGCAAGGTGGCTAGTTCGTATGTATTCATCATTGGAAAGGAATCCGAAACACCATATTATTCCAGCTGTTTCGCTTTCTGGGTCAACAGTTGCTGCTTTTGATGATATAAGTTTTGAAGATCCTGATTTTGAGTCCATTCAAGCCCTAGCCGAAGCTGGTATTGTACCCAGCAAGTTATCACCAAACTATGGATATGATGGCTTGGGTGATCGAGAGAGAACTAATTTTTTTCCTGAGAGGTTTGTATCTCGCCAGACTTTGATAGACTGGAAAGCCCAGTTAGATTATGAGTTTGTTCCTGGAATGCTAGAACGGATATCAAGTACAAAGGTGGATTTTATGGACTTGAAGGAGATCAGTTCAGAAGTATCGCCACAACTGTTCATGGATATTTTAGCTGGGGACAGAAGCATTCTCAGAAAAGTTTTTGGTCGAATCAAACGGTTTCAACCAAACAAGCCTTCAACAAAAGCACAAGTAGCAGTCACACTGGCAAGTGGCAGGATGACAGAAGCAATCTCTGCTGAATTATCAAGACTGGAGTCCGAGAGCTCTGCTAGAAAAGCTGAGATAGAAGATATCACATTGGAATTGGTAGAAAGAGGAGACATACAAAGGTATTGGGATAAGAAGCTAACTGAGGAGAAAAAACGCCTTATGGAGGTGGAGGAAATTTATCTTGCTGCTGTCAGTGATCTGGGAGAGGAGAAGACGGTTCAAGAGAAGTTCTTTTCCGAGTATTTAAAGGAGAAGGCATCTATTGACTGTCAGAGGCAATTGCTCCTCAGCCTCAAGGAAGAGGTTGATGGGGTAACAGAAAAGCTTCTTTCTGAGAGATCTGTATGTGAGAAAGAGCAGAGTGAGCTACGCAATATGCACGCCGATTTACAGAACCAGCTTGAAGGGATGGTTGATACGAAATCTGTGCTTGAAGCTGAGAAAGAAGCTCTCCGTATTCTTAGATCTTGGGTAGAAGACGAAGCAAGGAAAAGCCAAGCTCGTGCTAAGTACGAAGAGTTCATAATGTATAATTCCAAGTCGAATCAGAGGACTTCATTACAATATCTTGCTGTCCATGGTTCCATATGCATCGGTCCATTGCAACAAGCGGCTAAGAATTATATTTCAGCCATGCTTTTGCTTCCCGAACCTACCCTTGTAGTCATCGTGTCCATCTTCTTTCACACTTGTTCTGTGGGTAGTGGCTTGATTTTCTCTTCCTGGTTTCTGGTTAGAACCTTCGTTAGGATTGTATTGCTTCAATTCTTTCAGCTTGTCAAGAGGCTCCAATGGTTTGAAATGATAGACATGGAGGTGGGGAGGAATGGACAATACAGTTTTGAAGAACTGGCCTATGCAGTAAGGCAGCTCAATGTTAAAAACTCAAAGTCCGCCGCCTCTGCCGACAAGCTCACCGAAAATGGTGAAGAGAAGGAGGAGGTTAAGCATTCTAACCATGGCTTCAAAGATAATTATGGGGAGGAAGAGGAGGAAGAAGAAGTCAAGTTAATTAGTAGCGTATTTGATCAAGTTCCTGTTTATATAACTGAAGATGAAGACATTTTACCTGAGTTTGAAGACCTTCTATCTGGGGAGATCGAATTCCCATTACCTGAAATTGATGACAGTAAAGCTGAGAAGGATAGAGTATATGAAACTGAGATGGCAAACAATGCGAGTGAACTGGAGAGATTGCGCAACTTAGTAAAGGAATTGGAGGAGAGGGAAGTAAAGCTTGAAGGTGAACTGCTTGAATACTATGGATTGAAAGAACAGGAATCTGACATTACAGAGTTACAGAGGCAGCTCAAGATCAAGGCAGTAGAGATTGATATGCTCAATATTACCATTAGCTCTTTGCAGGCTGAAAGGAAGAAGCTTCAAGAAGAGATTGCACAAGATGCTACAGTGAAGAAGGAGTTGGAATTTGCAAGGAATAAGATCAAAGAGCTGCAGAGGCAGATTCAGCTTGATGCTAACCAAACAAAAGGCCAGCTATTATTACTCAAGCAACAAGTTTCCGGTCTACAGGCAAAGGAGCAAGAAACTATAAAGAAAGATACTGAACTAGAAAAGAAGTTGAAAGCTGTGAAGGAATTGGAGGTTGAAGTTATGGAACTCAAGAGGAAGAACAAAGAGCTTCAAATTGAAAAGCGGGAGTTGACTATTAAACTGGATGCTGCTGAAAATAAAATCTCGACTCTGTCCAACATGACAGAAAGTGAATTGGTATCCCAGACTAGAGAGCAAGTCAACAATTTAAGGCATGCAAATGAGGACTTGATAAAGCAAGTTGAAGGACTTCAGATGAATAGGTTCAGTGAAGTTGAAGAATTAGTGTACCTTCGTTGGGTCAATGCATGCTTAAGATATGAACTTCGCAATTACCAGGCTCCTACAGGAAAAGTATCAGCTCGTGATCTCAACAAGAATTTGAGCCCAAAATCTCAGGAGAAAGCTAAGCAACTCATGTTAGAGTATGCAGGATCAGAACGTGGACAAGGGGACACGGATCTTGAAAGCAACTACTCCCAACCATCTTCTCCTGGAAGTGAGGATTTTGACAATGCTTCAATTGATAGTTCCTTTAGTAGATATAGTAGTCTCAGTAAGAAACCTAGCTTGATCCAGAAGTTGAAGAAATGGGGTGGTAGAAGCAAAGATGATTCTAGTGCTCTTTCATCACCAGCCAGATCCTTTTCCGGGGGTTCTCCTAGCAGGATGAGCATGAGTCAAAAGCCGAGGGGTCCATTAGAATCGTTGATGCTTAGAAATGCAAGTGATAGTGTTGCAATCACCACCTTTGGTATGATGGAACAGGAAATTCCCGACTCTCCAGGCACTCCAAATCTCCCAAGTATCAGAACTCAAACTCCTAATGACTCCTTGAATTCAGTAGCATCATCATTCCAACTAATGTCTAAATCCGTTGAAGGAGTGTTAGATGAGAAATATCCAGCATATAAAGACCGACATAAGTTGGCATTAGCAAGGGAGAAGCAAATTAAGGAAAAGGCGGATCAGGCCAGAGCAGAGAGGTTTGGCAATATTTCAAATTCGAACTTAAACTCTGAATTTAAAGGTAAGACTGAGAGAGATAGATCTATAACTTTGCCGCCAAAACTTACTCAAATAAAGGAAAAACCAGTTGTATCTAGTGTTGCTACCGATGCATCTGGTGAAAATAAAACGACGGAGTCTCCAGCGATTAGCAGGATGAAACTAGCAGAGATTGAGAAGCGGCCTCCACGGACACCTAAGCCACCACCAAGACCATCAGCAGGTGCTTCTGTAAGCACAAATCCCATTCCTCAGGGTGGTGTACCAGCTGCTCCACCTCTACCACCTCCACCTCCCGGTGCCCCACCACTTCCTCCAACTGGTGGACCACCTCGTCCGCCTCCTCCTCCAGGAAGCTTGTCTAAAGGTGCTGGTGGTGATAAGGTTCATAGAGCTCCTGAGTTAGTTGAGTTCTATCAGACATTGATGAAACGAGAAGCAAAGAAGGATACTCCTTTACTTTCTTCTACGTCATCTAATGTGTCTGATGCCAGAAGTAACATGATTGGGGAGATTGAGAACAGGTCATCATTCCTCATAGCAGTAAAAGCAGATGTGGAAACTCAAGGTGATTTTGTCATGTCATTGGCAGCTGAAGTTCGAGCAGCTACATTCTCTAATATAGAGGATGTAGTGGCCTTCGTAAATTGGTTAGATGAAGAGCTATCATTCTTGGTTGATGAGAGGGCAGTCCTGAAGCATTTTGATTGGCCAGAAGGAAAGGCAGATGCATTGAGAGAGGCATCTTTTGAATACCAGGACCTTATGAAGTTGGAGAAGCGGGTCACCACGTTTGTTGATGAACCTAAACTCCCATGTGAAGCAGCTTTAAAGAAAATGTACTCCTTGCTTGAGAAGGTTGAGCAGAGTGTCTATGCACTCCTACGCACTAGAGACATGGCTATCTCGCGATATAGGGAGTTTGGAATTCCAGTTGATTGGCTGTCTGATACAGGAGTTGTTGGAAAGCCAAAGAATTGTCACAATTTTGGCCTTGGAAGCCATGAGCGAAGAAGAATTAAGCTCTCATCTGTACAATTAGCAAGGAAATACATGAAGCGTGTAGCATCAGAACTTGATGCAATAAATGAACCAGAGAAGGAGCCCAACAGAGAATTTTTGGTCTTGCAAGGCGTCCGTTTTGCTTTCCGTGTTCATCAGTTTGCGGGAGGCTTTGACGCAGAGAGCATGAAGGCTTTTGAAGAGTTGAGGAGCCGAATTCATACAACACAGATAGGAGATGACAATAAGCAGGAAGCCTGA 5004 42.95 MCSSSSFASTFSLFLTKSPSISRRRNVIYPNSHLFLGHLRPTSSTFRITASITERDLELSSWFNPDQPNNDDAYGGWIFLNSPTSVAKTEKRGLPRFVIGVVGTSLVVLFAVIAQISLSRRGFKFQWRTPLRSLEGVCSHTENVSDQGKTVEVSLTNDDLPTESGAESIPVSKIDDAVTSDSGYKLERVIITVPVDSAQDEALSILKKLKVIEDDIDAGELCSRREYARWLVRMYSSLERNPKHHIIPAVSLSGSTVAAFDDISFEDPDFESIQALAEAGIVPSKLSPNYGYDGLGDRERTNFFPERFVSRQTLIDWKAQLDYEFVPGMLERISSTKVDFMDLKEISSEVSPQLFMDILAGDRSILRKVFGRIKRFQPNKPSTKAQVAVTLASGRMTEAISAELSRLESESSARKAEIEDITLELVERGDIQRYWDKKLTEEKKRLMEVEEIYLAAVSDLGEEKTVQEKFFSEYLKEKASIDCQRQLLLSLKEEVDGVTEKLLSERSVCEKEQSELRNMHADLQNQLEGMVDTKSVLEAEKEALRILRSWVEDEARKSQARAKYEEFIMYNSKSNQRTSLQYLAVHGSICIGPLQQAAKNYISAMLLLPEPTLVVIVSIFFHTCSVGSGLIFSSWFLVRTFVRIVLLQFFQLVKRLQWFEMIDMEVGRNGQYSFEELAYAVRQLNVKNSKSAASADKLTENGEEKEEVKHSNHGFKDNYGEEEEEEEVKLISSVFDQVPVYITEDEDILPEFEDLLSGEIEFPLPEIDDSKAEKDRVYETEMANNASELERLRNLVKELEEREVKLEGELLEYYGLKEQESDITELQRQLKIKAVEIDMLNITISSLQAERKKLQEEIAQDATVKKELEFARNKIKELQRQIQLDANQTKGQLLLLKQQVSGLQAKEQETIKKDTELEKKLKAVKELEVEVMELKRKNKELQIEKRELTIKLDAAENKISTLSNMTESELVSQTREQVNNLRHANEDLIKQVEGLQMNRFSEVEELVYLRWVNACLRYELRNYQAPTGKVSARDLNKNLSPKSQEKAKQLMLEYAGSERGQGDTDLESNYSQPSSPGSEDFDNASIDSSFSRYSSLSKKPSLIQKLKKWGGRSKDDSSALSSPARSFSGGSPSRMSMSQKPRGPLESLMLRNASDSVAITTFGMMEQEIPDSPGTPNLPSIRTQTPNDSLNSVASSFQLMSKSVEGVLDEKYPAYKDRHKLALAREKQIKEKADQARAERFGNISNSNLNSEFKGKTERDRSITLPPKLTQIKEKPVVSSVATDASGENKTTESPAISRMKLAEIEKRPPRTPKPPPRPSAGASVSTNPIPQGGVPAAPPLPPPPPGAPPLPPTGGPPRPPPPPGSLSKGAGGDKVHRAPELVEFYQTLMKREAKKDTPLLSSTSSNVSDARSNMIGEIENRSSFLIAVKADVETQGDFVMSLAAEVRAATFSNIEDVVAFVNWLDEELSFLVDERAVLKHFDWPEGKADALREASFEYQDLMKLEKRVTTFVDEPKLPCEAALKKMYSLLEKVEQSVYALLRTRDMAISRYREFGIPVDWLSDTGVVGKPKNCHNFGLGSHERRRIKLSSVQLARKYMKRVASELDAINEPEKEPNREFLVLQGVRFAFRVHQFAGGFDAESMKAFEELRSRIHTTQIGDDNKQEA 1667
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 34948131 34959626 - ClCG05G023080.2 Cla05g02336 273826

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g02336 1667 MobiDBLite consensus disorder prediction 1107 1146 - -
Cla05g02336 1667 MobiDBLite consensus disorder prediction 1243 1375 - -
Cla05g02336 1667 MobiDBLite consensus disorder prediction 697 719 - -
Cla05g02336 1667 Coils Coil 520 540 - -
Cla05g02336 1667 MobiDBLite consensus disorder prediction 1282 1296 - -
Cla05g02336 1667 MobiDBLite consensus disorder prediction 1333 1367 - -
Cla05g02336 1667 Coils Coil 816 888 - -
Cla05g02336 1667 MobiDBLite consensus disorder prediction 1058 1084 - -
Cla05g02336 1667 Coils Coil 917 965 - -
Cla05g02336 1667 Coils Coil 971 998 - -
Cla05g02336 1667 Coils Coil 782 809 - -
Cla05g02336 1667 MobiDBLite consensus disorder prediction 1115 1140 - -
Cla05g02336 1667 PANTHER PROTEIN CHUP1, CHLOROPLASTIC 678 1665 IPR040265 -
Cla05g02336 1667 MobiDBLite consensus disorder prediction 693 719 - -
Cla05g02336 1667 PANTHER PROTEIN CHUP1, CHLOROPLASTIC 678 1665 - -
Cla05g02336 1667 MobiDBLite consensus disorder prediction 1062 1084 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g02336 - - - csv:101205484 1587.01
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g02336 Cla-Chr5:34948131 Cla10g01861 Cla-Chr10:34516333 3.76E-09 dispersed
Cla01g02311 Cla-Chr1:36933684 Cla05g02336 Cla-Chr5:34948131 4.30E-92 transposed
Cla01g02480 Cla-Chr1:38455986 Cla05g02336 Cla-Chr5:34948131 2.53E-32 transposed
Cla03g00053 Cla-Chr3:561905 Cla05g02336 Cla-Chr5:34948131 6.30E-65 transposed
Cla05g00740 Cla-Chr5:7005959 Cla05g02336 Cla-Chr5:34948131 9.07E-80 transposed
Cla05g00890 Cla-Chr5:8779340 Cla05g02336 Cla-Chr5:34948131 5.70E-58 transposed
Cla09g00024 Cla-Chr9:290753 Cla05g02336 Cla-Chr5:34948131 2.67E-64 transposed
Cla01g00560 Cla-Chr1:6220430 Cla05g02336 Cla-Chr5:34948131 4.38E-86 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g250 . . . . . . . . Cmo04g01614 . . . Car04g01591 . . . Cpe01g01370 Bhi07g01379 . . Lac13g0450 . . . Cla05g02336 Cam05g2510 Cec05g2534 Cco05g2577 Clacu05g2504 Cmu05g2366 Cre05g2483 Cone13ag0862 Cone19ag0862 . . Lsi04g00297 Csa05g02571 . Cme10g00299 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008211 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 35