Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g02337 ATGGCTTCCGAGAGCGTTTCCAGATCCAGTTCAGCGGCCGATTCTTATATTGGAAGCTTGATAAGCTTAACTTCCAAGAGTGAGATTAGATACGAAGGTGTTCTTTACAACATCAACACCGAAGAGTCCAGTATCGGACTGAGAAATGTACGGTCATTTGGAACAGAAGGGAGAAAGAAGGATGGACCACAAGTCCCACCAAGTGACAAAGTTTTTGAATACATCTTGTTCCGTGGAAGTGATATCAAGGATCTACAAGTAAAATCTTCTCCTCCTGTTCAGACTACATCCTTGATAAATAATGATCCAGCTATTATTCAGTCTCACTATCCTCGTCCAGCATCGACTTCTTCAAGCTTGCCTCCTCCTGTTAGTGGACCTTTGCCTGATATTAATTCTCAGGCCATGCCTATGGGAATTCCAGGATCTAATTTCCAGGGTGGGTTGCCTTTATATCATCCTGGAGGAAATGTAGGGTCTTGGGGAGCTTCTCCTACGCCATCTCCCCCAAATCCAAGTGGTGGTGGGCTTGCTTTGCCAATGTACTGGCAAGGGTATTATGGCCCCCCTAATGGACTTCCTCATATGCAACAGCAGTCATTACTTCGTCCACCACCTGGCCTGTCATTGCCTTCTTCCTTGCAGCAGCCCCTGCAATATCCTAATCTTAATGCTTCTTTACCCACTGGGGCACCAAATTTATTAGAAGTTCCATCTTCTTTATTCTCTGCTAATCCTACCACTCCTAGTTTATTGTCCACAGCAATGCCACCAGTAACTGTATCTTCGTCACTCCCATCTGTGCTTTCGGCTCCACAGACCTCTGAGATATCATCAAGCTCAGTGGCCAACAAGACAGTAAATTCTGCTCTTCCTCAAGCTCCTCTAAGTACTAATTTGCCATCGCTCTCTCCTTTGACGGCGAGTTCAGATGTCAGCCCTGTTGTGCCTCCAACTACTAACAAAACTACTACAGTTTCTGGTCCAGCATTGTCTTACCAAACTGTCTCTCAATCTACATCCTCTGTTGTTGGAACATCGAACTCTGCTCTCACAGGTGCACCTGCACCTACCCTTGTGACTCCAGGACAGCTGTTGCAAACTACTGTAGCCTCTTCATCTTTGCAAACAGTTCAAAAGGACGTTGAGGTGGTTCAAACATCTTCCTCCTTAGCAGCCGAACAAACTGTTCCAGCAGCCGATACTCAGCCACCATTATTACCGTTACCAGTGGCTTCACAAGCTATTCATAAGCCAAATGGTTCAACTTCGCAAACTCGGTACATCCACAGGGGACGTGGTAGAGGAAGACGATTTGGGAACTCGCATCAAACAGAAAGATTTACAGAAGATTTTGACTTCACGGCAATGAATGAGAAATTTAACAAGGATGAAGTCTGGGGTCATCTTGGCAAGAATACCAAATCTCATCCAAAGTACAATGATGGGGATGAAAAGTTCAGTGATGAAGATGATGTCTATGAGGAAGATGATGGTGAATCTTCAAAGTTGGAGATCAAGCCTGTGTACAATAAGGACGACTTTTTTGATACTCTCTCGTGCAACAATCCTGACAATGAAGCTCAAAATGGAAGGAGGACCAGATACTACGAACAAATCAAGTTGGACACTGAGACATTTGGTGAATTTGCAAGATTCCGAGGTGGTCGTGGTGGATTTTCTTCTGGACGTGGTGGCCGTCGTGGTGGTTATTACGGGAGAGGATACGGCCATGTTGGAAGGGGTCGAGGGCGGGGAATGCATAACTATAATCCCCTACTTACCACTGTACTCTTGGCCGAGCCAAGATCGTTGAGCTGCAGACCGCCTTTCTCTGTCCCCATGGCCGCGGCATTGCCCTCACTCACCCCATTACTCATCTTTGCCAGAATCTTTGGTCTGCTTGTTGCCGTTCTGGTCTTCGTTTGGGCTTTTGCATTCAGTTCCAGCTTCGGCCATCGCTCCCCTGCCCGCGATGACCATCTCTTCGACGTTCTGCATCCTTTGTTCATGGTAATTGGTCTCATTCTCCTCAGCGGGGAAGCAATTTTGGTCCATAGCTGGTTGCCTGGTTCGAGAAATTTGAGGAAATCTGTTCATCTGAGTCTTCAAGGGCTGGCTTTAGCTTCTGGGATTTCCGGAATTTGGACCAAGTTTCATTGGGATCGTGGCTTTTTGGCTAATTTCCACAGTTTACATTCTTGGATGGGTTTGATTGTTGTCACTTTGTTCGGAGCTCAGTGGATGATGGGGTTTCTGAGCTTCTGGCATTGGAGGGAGGTGAGGGCAACAAGAGAAAGAGTGCTGCCATGGCATGTGTTCCTTGGGTTATACAGTTATGCATTGGCAGTGGTAACAGCAGAAACAGGGCTTCTTGAGAAGTTGACATTGTTGCAAACCAAGAGAAATGTCCCTAGGAAGGGTCCTGAAGCCATGGTTGTAAACAGTCTAGGCTTGGCACTGGCTTTGCTTACTGGAACTGTTATGCTCACTGCTATATCTCCTAAATATCCTCCTTCCCTCCCCACCACCAAACAACAACCATTTTTCTCTAATTCAAAGCCCTTACCTTCTTAA 2577 46.29 MASESVSRSSSAADSYIGSLISLTSKSEIRYEGVLYNINTEESSIGLRNVRSFGTEGRKKDGPQVPPSDKVFEYILFRGSDIKDLQVKSSPPVQTTSLINNDPAIIQSHYPRPASTSSSLPPPVSGPLPDINSQAMPMGIPGSNFQGGLPLYHPGGNVGSWGASPTPSPPNPSGGGLALPMYWQGYYGPPNGLPHMQQQSLLRPPPGLSLPSSLQQPLQYPNLNASLPTGAPNLLEVPSSLFSANPTTPSLLSTAMPPVTVSSSLPSVLSAPQTSEISSSSVANKTVNSALPQAPLSTNLPSLSPLTASSDVSPVVPPTTNKTTTVSGPALSYQTVSQSTSSVVGTSNSALTGAPAPTLVTPGQLLQTTVASSSLQTVQKDVEVVQTSSSLAAEQTVPAADTQPPLLPLPVASQAIHKPNGSTSQTRYIHRGRGRGRRFGNSHQTERFTEDFDFTAMNEKFNKDEVWGHLGKNTKSHPKYNDGDEKFSDEDDVYEEDDGESSKLEIKPVYNKDDFFDTLSCNNPDNEAQNGRRTRYYEQIKLDTETFGEFARFRGGRGGFSSGRGGRRGGYYGRGYGHVGRGRGRGMHNYNPLLTTVLLAEPRSLSCRPPFSVPMAAALPSLTPLLIFARIFGLLVAVLVFVWAFAFSSSFGHRSPARDDHLFDVLHPLFMVIGLILLSGEAILVHSWLPGSRNLRKSVHLSLQGLALASGISGIWTKFHWDRGFLANFHSLHSWMGLIVVTLFGAQWMMGFLSFWHWREVRATRERVLPWHVFLGLYSYALAVVTAETGLLEKLTLLQTKRNVPRKGPEAMVVNSLGLALALLTGTVMLTAISPKYPPSLPTTKQQPFFSNSKPLPS 858
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 34960582 34969658 - ClCG05G023100.2 Cla05g02337 273827
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g02337 858 Pfam FDF domain 447 549 IPR019050 -
Cla05g02337 858 Pfam Scd6-like Sm domain 16 89 IPR025609 -
Cla05g02337 858 CDD LSm14_N 16 87 IPR025609 -
Cla05g02337 858 PANTHER PROTEIN DECAPPING 5-LIKE 5 585 - -
Cla05g02337 858 SUPERFAMILY Sm-like ribonucleoproteins 15 92 IPR010920 -
Cla05g02337 858 Gene3D - 616 838 - -
Cla05g02337 858 Pfam Eukaryotic cytochrome b561 666 796 IPR006593 -
Cla05g02337 858 ProSiteProfiles DFDF domain profile. 440 476 IPR025762 -
Cla05g02337 858 PANTHER SCD6 PROTEIN-RELATED 5 585 - -
Cla05g02337 858 MobiDBLite consensus disorder prediction 468 486 - -
Cla05g02337 858 Gene3D - 7 92 - -
Cla05g02337 858 ProSiteProfiles Cytochrome b561 domain profile. 628 833 IPR006593 -
Cla05g02337 858 SMART 561_7 666 791 IPR006593 -
Cla05g02337 858 ProSiteProfiles FFD box profile. 508 523 IPR025761 -
Cla05g02337 858 SMART LSM14_2 10 110 IPR025609 -
Cla05g02337 858 ProSiteProfiles TFG box profile. 531 551 IPR025768 -
Cla05g02337 858 CDD Cyt_b561_ACYB-1_like 660 799 - -
Cla05g02337 858 MobiDBLite consensus disorder prediction 468 502 - -
Cla05g02337 858 SMART FDF_2 446 551 IPR019050 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cla01g00562 Cla05g02337 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g02337 Cla-Chr5:34960582 Cla09g01236 Cla-Chr9:16407007 4.40E-35 dispersed
Cla01g00562 Cla-Chr1:6241048 Cla05g02337 Cla-Chr5:34960582 0 wgd
Cla11g00506 Cla-Chr11:5738605 Cla05g02337 Cla-Chr5:34960582 3.66E-45 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g02337 K18749 - csv:101205721 905.205