Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g02349 AAGGCAAAGCGATGCAGAAGAGAAGACCCTTTCAGAGCAGAAAAACAGTCGCCATTGGTGAAAACTTGCCGAATTCGAAACAATCATGCCAGAAGAGAAGAAAATTTGGTGGTTGAAAGAATTAAAGCGCGGTTTCTTGAGAAGTGGAGAGAAAAATGCGAGAGATCGAGTCCAAGTCTTCGTATAAAACTTCGAGGTCCCGAGGAAGAGTTAAATATATGGGAATTTTTACTCCTATTTGATGGCTTTACGCCGAAACGCTTTGGCGGTATCTGGCATTTCTTGATAAAGTTGAAGGTTTCTGTTTCTGGTTGTACCTGTAAATTGGTGTTTGTGGGAACTTCAATCGGTGGAATTGAAAAAATGAGCCGCGGCAGAAGGAGAAAGCTGCATTTTAGCAAGATCTACTCGTTTGCATGTGGGAAAGCTTCTTTAAAGGATGATCATTCACAACTTGGGGGTCCGGGGTTTTCTCGAGTTGTTTTCTGTAACGAACCAGAGTGTTTTGAGGCAGAAATTCGTAACTACATAGACAATCATATTAGTACAACCAAGTATACTCTAGCTACTTTCCTCCCTAAGTCTTTGTTTGAGCAATTCAGGAGGGTGGCCAATTTCTATTTTTTAGTCAGTGGGATCCTTGCTTTTACTCCTCTTGCTCCTTACACGGCTGTTAGCGCGATTATCCCTCTTATTCTTGTCATTTCAGCGACAATGATCAAAGAAGGGATTGAGGATTGGAGGCGGAAGAAACAGGATATTGAGGTTAACAATAGAAAGGTTAAAGTGCATCAAGGTGATGGAGTTTTTGCTTATACAGAGTGGAAGAATCTGAGAGTGGGTAATATTGTGAGAGTGGAGAAGGATGAATTCTTTCCAGCAGATATTATCTTGCTTTCATCCAGTTATGAGGATGCAATCTGCTATGTTGAGACAATGAACCTTGATGGTGAGACAAATTTGAAACTAAAACAAGCATTGGAGGTGACTTCGCATATGCATGAGGATTCTATGTTCAACAGCTTTAAGGCTATCATAAAATGCGAGGATCCAAATGCAAATTTGTACAGTTTTGTTGGTAGTATGGAGTTGGAAGAGCAACAATATCCTCTGTCTCCTCAACAACTACTCCTTCGAGACTCTAAACTCCGGAATACAGATTATATATATGGGGTGGTTGTCTTTACTGGTCGTGACACAAAGGTTATTCAAAATTCTACGGATCCACCTTCAAAGAGAAGCAAAGTTGAGAGGAAAATGGATAAGATTATATATATTTTGTTCTGTCTTCTATTTTTGCTTGCTCTTGTAGGATCTATATTTTTTGGCCTTGTGACTGACGAGGATTTGGAAAATGGAAGAATGAAGAGATGGTATCTCAGGCCTGATGATGCCAAAATTTTCTTTGATCCAAAAAGGGCTCCAATAGCTGCAATATTTCATTTTCTTACGGCACTGATGTTATATAATTACTTCATTCCAATCTCACTGTATGTATCAATAGAAATTGTCAAAGTTCTTCAGAGCATATTTATCAATCAAGATATTAATATGTATTATGAAGAGGCTGATAAACCTGCTCGTGCTCGCACCTCAAATTTGAATGAAGAACTTGGTCAAGTTGATACAATACTCTCTGACAAGACTGGAACTCTGACCTGTAATTCAATGGAGTTCATTAAGTGTTCTGTGGCAGGGAGGGCTTATGGACGGGGTTTCACGGAGGTAGAAAGGACTATAGGTAGACAAAAGGATTCACCCCTGCATGAAGCTGTAAATGGGAGAAATCACCATGAGGATGCCAATGATAAAACTTCACATATCAAGGGCTTTAATTTTAAGGATGATAGGATTATGAATGGGAACTGGGTTAACGAGCCTCATGCAAATGTAATTCAAATGTTTTTCCGTCTTCTTGCAACTTGTCATACGGCAATACCTGAAATCAATGAGGACACTGGAGAGGTTTCTTACGAGGCTGAATCTCCAGATGAAGCAGCATTTGTGATTGCAGCTAGAGAACTCGGCTTTGAATTCTACAAAAGAACACAGACAAGCATATCACTGCACGAGTTTGATCCTTCCTTAGGCAAGAAAGTTGATAGGACATATAAACTGCTGCATGTTCTGGAGTTTAATAGCTCAAGAAAGCGGATGTCTGTCATAGTAAGAGATGAAGAGGATAAAATATTATTATTCTGTAAAGGTGCAGACAGTATCATGTTTGAAAGACTTGGAAAGAATGGAAGGGAGTTTGAAGAGGAGACCAAAGAACATGTCAATGAGTATGCTGATGCTGGATTGCGGACTTTGATACTTGCCTATCGTGAGCTTGAAGAGGAAGAATACAGAGAATTTGATGACAAGTTCACTAAGGCCAAAAGTTCAGTTAGTGCAGATCGAGAATCACTGATTGAGAAAGTAACTGACAACATTGAGAGGAATTTAATTCTTCTTGGTGCCACTGCTGTTGAGGACAAGCTTCAAAATGGGGTTCCTGAATGCATTGACAGGCTTGCTCAGGCGGGAATTAAGATTTGGGTTTTGACCGGGGACAAAATGGAGACTGCCATTAATATTGGCTTACTAAGACAAGATATGAAGCAGATTGTTATTACCCTGGAGACATCAGAAATTAAGGCGCTAGAAAAGACAGGGGATAAGGCTTCTATCACCAAGGCATCAATGCAATGCGTCCTCGATCAAATTACTCAAGGGAGAGCTCAGATCACTTCACCAAATGGGTTATCTGAAGCATTTGCATTAATTATTGATGGAAAATCACTTTCTTATGCTTTAGAGGACAGTATGAAGGCATTGTTTCTTGAGGTAGCAACACATTGTGCTTCTGTTATTTGCTGCCGTTCATCTCCAAAACAGAAGGCACTGGTAACAAGGTTAGTTAAATCTGGAACACGGAAAACAACTTTAGCTATTGGCGATGGTGCCAATGATGTAGGGATGCTTCAAGAAGCGGACATTGGAGTCGGAATTAGTGGTGCGGAAGGAATGCAGGCCGTTATGTCAAGTGATGTTGCAATTGCACAGTTTAAATATTTAGAGCGCCTGCTTCTTGTGCATGGTCATTGGTGCTACAGAAGGATATCATCAATGATTTGCTACTTTTTCTATAAGAATATTACTTTTGGTTTTACCATATTCCTATACGAAGCATTCACATCATTCTCTGGGCAACCTGTATATAATGATTGGTTTTTATCGCTTTACAATGTTTTCTTCTCGTCGCTTCCAGTGGTAGCTTTGGGAGTTTTTGATCAGGATGTATCTGCAAGACTCTGTCTCCAGTTTCCTCTCTTATACCAACAAGGGGTGCAGAATGTTCTTTTCAGCTGGCTCCGAATACTCAGTTGGATGTTTAATGGATTGTGCAGTGCCGTGATCATTTTCTTCATTTGCACTAGAGCACTCGAGCATCAGGCATTCAACTCCGATGGGAAAACTGCAGGGCGGGATATTTTGGGTGCAACAATGTACTCTTGTGTTGTTTGGGTTGTGAACTTGCAAATGGCGCTCGCTGTTAGTTACTTCACCTTGATACAGCATCTTTTCATCTGGGGTTCGATTTCGATCTGGTACATTTTTCTCCTGATCTATGGGTCCATGACCCCCACCTTTTCAACCAATGCTTACCATATTTTCATCGAAGTCCTTGCCCCTGGTCCTTCCTACTGGTTTGTGCTTCTGTTTGTGGTGATCACAACACTCATTCCTTACTTCTCCTACTCAGCTATACAGATGAGGTTCCTTCCCATGTATCATCAAATGATTTTATGGATTAGAAATGAAGGGCAACTAGACAACCAAGAGTACTGTGATATTTTCCGGAACACTTCCACTTTCCGATCAACGAGCGTGGGTTCCACAGCACGGTTAGCAGCCAAACAGAGCAAATTAAAAGAGAGAAACCAGAGTGATACTTGA 3942 40.64 KAKRCRREDPFRAEKQSPLVKTCRIRNNHARREENLVVERIKARFLEKWREKCERSSPSLRIKLRGPEEELNIWEFLLLFDGFTPKRFGGIWHFLIKLKVSVSGCTCKLVFVGTSIGGIEKMSRGRRRKLHFSKIYSFACGKASLKDDHSQLGGPGFSRVVFCNEPECFEAEIRNYIDNHISTTKYTLATFLPKSLFEQFRRVANFYFLVSGILAFTPLAPYTAVSAIIPLILVISATMIKEGIEDWRRKKQDIEVNNRKVKVHQGDGVFAYTEWKNLRVGNIVRVEKDEFFPADIILLSSSYEDAICYVETMNLDGETNLKLKQALEVTSHMHEDSMFNSFKAIIKCEDPNANLYSFVGSMELEEQQYPLSPQQLLLRDSKLRNTDYIYGVVVFTGRDTKVIQNSTDPPSKRSKVERKMDKIIYILFCLLFLLALVGSIFFGLVTDEDLENGRMKRWYLRPDDAKIFFDPKRAPIAAIFHFLTALMLYNYFIPISLYVSIEIVKVLQSIFINQDINMYYEEADKPARARTSNLNEELGQVDTILSDKTGTLTCNSMEFIKCSVAGRAYGRGFTEVERTIGRQKDSPLHEAVNGRNHHEDANDKTSHIKGFNFKDDRIMNGNWVNEPHANVIQMFFRLLATCHTAIPEINEDTGEVSYEAESPDEAAFVIAARELGFEFYKRTQTSISLHEFDPSLGKKVDRTYKLLHVLEFNSSRKRMSVIVRDEEDKILLFCKGADSIMFERLGKNGREFEEETKEHVNEYADAGLRTLILAYRELEEEEYREFDDKFTKAKSSVSADRESLIEKVTDNIERNLILLGATAVEDKLQNGVPECIDRLAQAGIKIWVLTGDKMETAINIGLLRQDMKQIVITLETSEIKALEKTGDKASITKASMQCVLDQITQGRAQITSPNGLSEAFALIIDGKSLSYALEDSMKALFLEVATHCASVICCRSSPKQKALVTRLVKSGTRKTTLAIGDGANDVGMLQEADIGVGISGAEGMQAVMSSDVAIAQFKYLERLLLVHGHWCYRRISSMICYFFYKNITFGFTIFLYEAFTSFSGQPVYNDWFLSLYNVFFSSLPVVALGVFDQDVSARLCLQFPLLYQQGVQNVLFSWLRILSWMFNGLCSAVIIFFICTRALEHQAFNSDGKTAGRDILGATMYSCVVWVVNLQMALAVSYFTLIQHLFIWGSISIWYIFLLIYGSMTPTFSTNAYHIFIEVLAPGPSYWFVLLFVVITTLIPYFSYSAIQMRFLPMYHQMILWIRNEGQLDNQEYCDIFRNTSTFRSTSVGSTARLAAKQSKLKERNQSDT 1313
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 35088234 35096135 + ClCG05G023230.1 Cla05g02349 273839
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g02349 1313 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 618 820 IPR023299 GO:0000166
Cla05g02349 1313 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 122 1307 - -
Cla05g02349 1313 Pfam Phospholipid-translocating ATPase N-terminal 161 227 IPR032631 -
Cla05g02349 1313 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 947 1061 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cla05g02349 1313 PRINTS P-type cation-transporting ATPase superfamily signature 877 887 - -
Cla05g02349 1313 PRINTS P-type cation-transporting ATPase superfamily signature 979 998 - -
Cla05g02349 1313 PRINTS P-type cation-transporting ATPase superfamily signature 545 559 - -
Cla05g02349 1313 Gene3D - 665 818 IPR023299 GO:0000166
Cla05g02349 1313 SFLD Haloacid Dehalogenase 529 1030 - -
Cla05g02349 1313 TIGRFAM ATPase-Plipid: phospholipid-translocating P-type ATPase, flippase 176 1263 IPR006539 GO:0000287|GO:0005524|GO:0015914|GO:0016021|GO:0140326
Cla05g02349 1313 SUPERFAMILY Calcium ATPase, transmembrane domain M 174 1257 IPR023298 -
Cla05g02349 1313 Gene3D - 819 1019 IPR023214 -
Cla05g02349 1313 ProSitePatterns E1-E2 ATPases phosphorylation site. 547 553 IPR018303 -
Cla05g02349 1313 PANTHER PHOSPHOLIPID-TRANSPORTING ATPASE 122 1307 - -
Cla05g02349 1313 Gene3D - 236 407 - -
Cla05g02349 1313 SUPERFAMILY Calcium ATPase, transduction domain A 260 404 IPR008250 -
Cla05g02349 1313 SFLD p-type atpase 529 1030 IPR044492 -
Cla05g02349 1313 Pfam Phospholipid-translocating P-type ATPase C-terminal 1007 1257 IPR032630 -
Cla05g02349 1313 Pfam Cation transport ATPase (P-type) 642 746 - -
Cla05g02349 1313 CDD P-type_ATPase_APLT_Dnf-like 178 1139 - -
Cla05g02349 1313 SUPERFAMILY HAD-like 540 1034 IPR036412 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g02349 Cla-Chr5:35088234 Cla09g00071 Cla-Chr9:677972 0 dispersed
Cla05g02349 Cla-Chr5:35088234 Cla05g02351 Cla-Chr5:35097883 2.77E-32 proximal
Cla06g00811 Cla-Chr6:11384214 Cla05g02349 Cla-Chr5:35088234 0 transposed
Cla04g01120 Cla-Chr4:26405711 Cla05g02349 Cla-Chr5:35088234 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g02349 K01530 - csv:101207148 2225.28