Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g02353 ATGGCGGCCGTATCACCGGCGCCTAATTCATCTCCGTCGCCGGCTTCTCCCTCCCCTCCATCTCCGCCGCCTCCGGTCGCATCTAATTCCCCACCTAGTACTCCGTCACTGTCGCCGCCGCAACAATCGCCTCCTCCGAATCCGTCTGACTCCGCGACTCCCACTTCATCTCCTCCTCCGCCGTCTCGTCAACCATCTGCTGCTTCACCTCCACCTGCATCTGAAACTCCGCCGCCATCAACACCCGCATTGTCTCCTCCGCCGGCAACTCCACCATCAACTCCGTCCAATGCTCCACCCCCATCAACACCGGACCCTCCACCACCATCAGCAACCCCACCAGTAAGCTCCACTCCACCAACGCCATCTAATTCCCCACCAAATTCATCTCCACCTCCTGCAGCACAGCCTCCTCAATCCCCTCCACAATCATCAAAACCACCTGAAAACCCCCCTCCGCTGCCGCCGCCACCACCACAAGCAAACCCGCCGGATAATCCAGCGCCGCCGCCACAGCCCACAAACCCACCTGGGAATTCACCTCCTACGCCACCATCAGCACTGCCTCCAGCTACCTCACCTCCTTCCCCAGCATCCATACCTCCAAGAAATTCACCTCCACCCCCAAGGCTTACTCCACCTCCCGGTGAGCCCTCACTTTCAAGTCCTCCTCCCAGGTCATCACCGCCCCCATCTCCTCCACCACCGCCGCCGTCACATCTTTCTCCTCCATTACCGTCTAAACCCCCAACATTGCCGTCAGGAAATCGTACGGACGATGGTTCTGGTCCTATTGATGGAGGAGCAAACTCGAAATCCAACAGCAATGGAGGGATCAGTAGTGGGGGTGTGATCGCCATTGGAGTAGTGGCAGGAATTATAGTGCTTTCCATAATTGGGTTTGTTGTTTGGTACATCAGGAGGCCAAGGAAAAATGATTCTGGGCGTGGAGGTTACATTATGCCATCCTCTCTGGGCTCCTCTCCTAAGTCGGAAACATCCCTTATGAAGGTCCATTCCACAGTTCATCAAGACATACATGCCAGTGGCAGTGGCAGTGGCAGTGGCAGTGGTGGAATATACACTCCAAAAGAGCTTGGTGGGTTGGGCAGTTCGAGGCCATTGTTTACATACGAAGAACTCTTCAAAGCAACAGATGCATTTTCTACTCAGAACCTTTTAGGAGAAGGAGGATTTGGTTCTGTTTATAAAGGATATCTACCAGATGGAAGAGTGGTTGCAGTGAAGGAGCTAAAGATTGGTGGTGGTCAGGGTGAGCTGGAATTCAAAGCTGAAGTTGAGATTATTGGTCGTGTACACCATCGCCATTTGGTTTCTCTTGTGGGCTATTGTATTTCAGAGCATCAAAGGTTGCTGGTCTATGATTATGTCCCTAACAATTCCCTTTACTACCATCTTCATCTCAAAGGGGATGGCGAGCTCGTTCTGGAATGGACAAAGCGCATTAAGATCGCAGCTGGTGCAGCTCGGGGAGTTGCTTATCTTCATGAAGACTGCCACCCTCGAATTATCCACCGTGATATCAAATCTTCAAACATTCTTCTAGATGAAAATTTTGAAGCTCGGGTTTCTGACTTTGGGCTTGCTAGATTAGCTCTCGATGAACAAACTCATATAACAACCCGTGTTGTGGGAACTTTTGGATATGTTGCCCCTGAATATGCATCGAGTGGAAAGTTAACTGAGAGGTCAGATGTATATTCTTTTGGAGTTGTACTTCTTGAGCTGATTACTGGTCGAAAGGCTGTGGACGCATCCCAACCAATGGGGAATGAGAGCCTTGTCGAATGGGCTCGGCCTTTACTAAACCATGCACTCGACAGCCAAGATTTCGAAAAATTGGTGGACCCAAGGCTTGAAAGGAACTACGTCGAGAGTGAAATGTTGGGGATGATAGGAATAGCTGCTGCTTGCGTGCGGCACGCGTCTGCCAAGAGACCGCAGATGGGACAGGTTGTTAGAGCTTTTGATAGTTTAGCCACAGCAGATTTAAGTAATGGAATGAGATTCGGGGAGAGTCAAGCTTTCGACTCCGGTCAACAATCTGCTGAAATTAGATTTTTCCGAATGCTGGCCTTCGGTAACCAAGATTACAGTTCAGACTTTTATAGCCAAGGTAGCTCAAATGCCTGA 2154 50.88 MAAVSPAPNSSPSPASPSPPSPPPPVASNSPPSTPSLSPPQQSPPPNPSDSATPTSSPPPPSRQPSAASPPPASETPPPSTPALSPPPATPPSTPSNAPPPSTPDPPPPSATPPVSSTPPTPSNSPPNSSPPPAAQPPQSPPQSSKPPENPPPLPPPPPQANPPDNPAPPPQPTNPPGNSPPTPPSALPPATSPPSPASIPPRNSPPPPRLTPPPGEPSLSSPPPRSSPPPSPPPPPPSHLSPPLPSKPPTLPSGNRTDDGSGPIDGGANSKSNSNGGISSGGVIAIGVVAGIIVLSIIGFVVWYIRRPRKNDSGRGGYIMPSSLGSSPKSETSLMKVHSTVHQDIHASGSGSGSGSGGIYTPKELGGLGSSRPLFTYEELFKATDAFSTQNLLGEGGFGSVYKGYLPDGRVVAVKELKIGGGQGELEFKAEVEIIGRVHHRHLVSLVGYCISEHQRLLVYDYVPNNSLYYHLHLKGDGELVLEWTKRIKIAAGAARGVAYLHEDCHPRIIHRDIKSSNILLDENFEARVSDFGLARLALDEQTHITTRVVGTFGYVAPEYASSGKLTERSDVYSFGVVLLELITGRKAVDASQPMGNESLVEWARPLLNHALDSQDFEKLVDPRLERNYVESEMLGMIGIAAACVRHASAKRPQMGQVVRAFDSLATADLSNGMRFGESQAFDSGQQSAEIRFFRMLAFGNQDYSSDFYSQGSSNA 717
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 35102124 35105835 - ClCG05G023260.2 Cla05g02353 273843
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g02353 717 Pfam Protein kinase domain 389 597 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla05g02353 717 ProSitePatterns Protein kinases ATP-binding region signature. 394 416 IPR017441 GO:0005524
Cla05g02353 717 ProSiteProfiles Protein kinase domain profile. 388 666 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla05g02353 717 SUPERFAMILY Protein kinase-like (PK-like) 371 661 IPR011009 -
Cla05g02353 717 MobiDBLite consensus disorder prediction 10 251 - -
Cla05g02353 717 Gene3D Phosphorylase Kinase; domain 1 365 463 - -
Cla05g02353 717 CDD STKc_IRAK 394 666 - -
Cla05g02353 717 MobiDBLite consensus disorder prediction 1 277 - -
Cla05g02353 717 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK8 119 710 - -
Cla05g02353 717 Gene3D Transferase(Phosphotransferase) domain 1 464 680 - -
Cla05g02353 717 ProSitePatterns Serine/Threonine protein kinases active-site signature. 510 522 IPR008271 GO:0004672|GO:0006468
Cla05g02353 717 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 119 710 - -
Cla05g02353 717 SMART serkin_6 388 667 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g02353 Cla-Chr5:35102124 Cla05g02542 Cla-Chr5:36770135 5.54E-167 dispersed
Cla07g01184 Cla-Chr7:28822190 Cla05g02353 Cla-Chr5:35102124 2.21E-92 dispersed
Cla07g01267 Cla-Chr7:29757223 Cla05g02353 Cla-Chr5:35102124 1.76E-61 dispersed
Cla01g00772 Cla-Chr1:9015042 Cla05g02353 Cla-Chr5:35102124 5.37E-60 transposed
Cla01g02279 Cla-Chr1:36666684 Cla05g02353 Cla-Chr5:35102124 5.25E-50 transposed
Cla02g02181 Cla-Chr2:36930009 Cla05g02353 Cla-Chr5:35102124 7.35E-33 transposed
Cla03g00394 Cla-Chr3:4515225 Cla05g02353 Cla-Chr5:35102124 7.72E-63 transposed
Cla05g00833 Cla-Chr5:8234347 Cla05g02353 Cla-Chr5:35102124 5.71E-88 transposed
Cla08g01146 Cla-Chr8:24215393 Cla05g02353 Cla-Chr5:35102124 5.04E-56 transposed
Cla02g00209 Cla-Chr2:2179462 Cla05g02353 Cla-Chr5:35102124 1.77E-71 transposed
Cla11g00502 Cla-Chr11:5689932 Cla05g02353 Cla-Chr5:35102124 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80592 PF00069 Pkinase 3.40E-43 CL0016 Cla PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g02353 - - cmo:103489228 842.032