Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g02357 ATGGTTCAAATGGGAATTATTAGAATAAAAGTTTCCATTTTCTTCTTCTTCTTCTTCTTCTTCTTCTTATGGAATTCTTCAGTAAATGGTTTGCTTACTGCAAAAGGTGTCAACTATGAAGTTCAAGCCTTGATGGCCATTAAAGCTGCTTTGAAAGATCCACATTCTGTTCTTAATTGGGATGAAAACGCTGTGGATCCATGTAGTTGGAGCATGATTACTTGTTCTTCAGAGAAATTTGTCATTAGCTTAGGAGCTCCAAGTCAGAACTTGTCCGGTAGCCTGTCGCCGAGCATCGGAAATTTGACGAATCTTCAGTCTGTGCTTCTACAGGACAACAATATATCAGGAACAATCCCAATGGAGCTTGGGAACATACCTAGCCTTGACACTCTTGATCTTTCAAGCAATGGCTTCCATGGAGAAATTCCCACTTCTCTTTCCCATCTCAAGAGTCTTCAATACTTGAGGCTTAATAACAACAGTCTTTCTGGAGCTATTCCTTCATCTTTGGCCAACATGACTCAGCTGGCATTGTTGGACCTGTCTTTTAATAATCTTAGTGGCCCATTGCCCAGATTGCTAGCTAAAACATACAACCTTGCTGGGAATTCTCTCATTTGCTCACCTGGGTCAGAGCATAGCTGCAATGGAACTGCTCCACCTCTTTTATTTGCAGTCAATACACCTCAAAAGCCACAACCTTCTGGGAGATCCAAGGGCCAAAAATTAGCCTTAGCTTTTGGCTCAAGCCTTGGATGTGTTTTTCTGTTAACTATTGGGTTTGGCTTCTTTATTTGGTGGAGGCAACGACACAACCAGCAGATTTTCTTTGATGTTAATGACCAAAGATTTGAAGAAGTTTGCCTTGGGAACCTAAGGATCTTCCAGTTCAGAGAGCTTCAAGCTGCTACAAACAACTTCAGCAGCAAAAACTTGGTGGGAAAAGGTGGATTTGGGAATGTATACAAAGGGTACCTTCAAGATGGTACGGTTATAGCTGTGAAGAGGTTAAAAGATGGAAATGCAATGAGAGGAGAAATCCAATTCCAGACTGAAGTTGAGATGATCAGCTTAGCCGTGCACCGGAACCTCCTCCGTCTCTATGGGTTCTGTATGACAACCACAGAGAGACTTTTGGTTTACCCCTATATGTCTAACGGCAGTGTTGCATCCCGTCTCAAAGCAAAGCCAGCTCTGGATTGGAGCACCAGGAAAAGAATAGCATTGGGAGCAGCAAGAGGGTTACTGTATTTGCATGAGCAGTGTGATCCTAAGATCATACACAGGGATGTCAAGGCAGCAAATATATTGCTTGATGATTATTGCGAGGCTGTGGTGGGAGATTTTGGATTGGCAAAGCTGTTGGATCACAGAGATTCGCATGTGACCACTGCTGTACGAGGAACTGTTGGCCATATAGCTCCTGAGTATCTCTCCACTGGCCAATCTTCTGAGAAAACTGATGTGTTTGGATATGGAATTCTTCTTCTTGAGTTGATCACTGGACAGAGAGCTCTTGAATTTGGAAAAGCTGCTAATCAGAAAGGAGCCATGCTTGATTGGGTCAAGAAAATTCACCAAGAAAAGAAGCTTGAAATACTAGTCGATAAGGATCTGAGGAACAATTACGACAGGATTGAACTTGAAGAAATGGTTCAAGTAGCTCTTTTATGCACACAGTATCTTCCAACTACCAGACCTAAGATGTCTGAAGTGGTCAGAATGCTTGAAGGGGATGGACTTGCGGAGAAATGGGAAGCTTCTCAGAGGGCAGATGCAAACAGGTACAGAGTCAATGAATTCTCCTCGTCAGAGCGATACTCTGATCTAACAGATGATTCTTCCCTGCTTGCACAAGCCATGGAGCTTTCTGGACCAAGATGA 1887 42.98 MVQMGIIRIKVSIFFFFFFFFFLWNSSVNGLLTAKGVNYEVQALMAIKAALKDPHSVLNWDENAVDPCSWSMITCSSEKFVISLGAPSQNLSGSLSPSIGNLTNLQSVLLQDNNISGTIPMELGNIPSLDTLDLSSNGFHGEIPTSLSHLKSLQYLRLNNNSLSGAIPSSLANMTQLALLDLSFNNLSGPLPRLLAKTYNLAGNSLICSPGSEHSCNGTAPPLLFAVNTPQKPQPSGRSKGQKLALAFGSSLGCVFLLTIGFGFFIWWRQRHNQQIFFDVNDQRFEEVCLGNLRIFQFRELQAATNNFSSKNLVGKGGFGNVYKGYLQDGTVIAVKRLKDGNAMRGEIQFQTEVEMISLAVHRNLLRLYGFCMTTTERLLVYPYMSNGSVASRLKAKPALDWSTRKRIALGAARGLLYLHEQCDPKIIHRDVKAANILLDDYCEAVVGDFGLAKLLDHRDSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGYGILLLELITGQRALEFGKAANQKGAMLDWVKKIHQEKKLEILVDKDLRNNYDRIELEEMVQVALLCTQYLPTTRPKMSEVVRMLEGDGLAEKWEASQRADANRYRVNEFSSSERYSDLTDDSSLLAQAMELSGPR 628
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 35159817 35162905 + ClCG05G023320.2 Cla05g02357 273847
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g02357 628 PANTHER PROTEIN NSP-INTERACTING KINASE 2-LIKE 12 628 - -
Cla05g02357 628 Pfam Leucine rich repeat 127 187 IPR001611 GO:0005515
Cla05g02357 628 Pfam Protein kinase domain 309 575 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla05g02357 628 ProSitePatterns Serine/Threonine protein kinases active-site signature. 427 439 IPR008271 GO:0004672|GO:0006468
Cla05g02357 628 Pfam Leucine rich repeat N-terminal domain 38 76 IPR013210 -
Cla05g02357 628 ProSitePatterns Protein kinases ATP-binding region signature. 314 336 IPR017441 GO:0005524
Cla05g02357 628 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 12 628 - -
Cla05g02357 628 Gene3D Phosphorylase Kinase; domain 1 277 384 - -
Cla05g02357 628 SUPERFAMILY Protein kinase-like (PK-like) 286 578 IPR011009 -
Cla05g02357 628 ProSiteProfiles Protein kinase domain profile. 308 563 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla05g02357 628 SMART serkin_6 308 563 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla05g02357 628 Gene3D Ribonuclease Inhibitor 37 218 IPR032675 -
Cla05g02357 628 Gene3D Transferase(Phosphotransferase) domain 1 385 597 - -
Cla05g02357 628 SUPERFAMILY L domain-like 40 201 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g02327 Cla-Chr1:37065220 Cla05g02357 Cla-Chr5:35159817 0 dispersed
Cla05g02357 Cla-Chr5:35159817 Cla06g01266 Cla-Chr6:25917869 0 dispersed
Cla01g00725 Cla-Chr1:8419245 Cla05g02357 Cla-Chr5:35159817 0 transposed
Cla02g00011 Cla-Chr2:154226 Cla05g02357 Cla-Chr5:35159817 8.48E-167 transposed
Cla02g00672 Cla-Chr2:7703190 Cla05g02357 Cla-Chr5:35159817 5.77E-38 transposed
Cla03g01350 Cla-Chr3:28940577 Cla05g02357 Cla-Chr5:35159817 8.69E-36 transposed
Cla07g00886 Cla-Chr7:24514741 Cla05g02357 Cla-Chr5:35159817 0 transposed
Cla08g00308 Cla-Chr8:7302249 Cla05g02357 Cla-Chr5:35159817 0 transposed
Cla08g01742 Cla-Chr8:29908666 Cla05g02357 Cla-Chr5:35159817 0 transposed
Cla09g01205 Cla-Chr9:15035163 Cla05g02357 Cla-Chr5:35159817 4.42E-35 transposed
Cla09g01478 Cla-Chr9:28430394 Cla05g02357 Cla-Chr5:35159817 0 transposed
Cla10g00875 Cla-Chr10:20028784 Cla05g02357 Cla-Chr5:35159817 0 transposed
Cla11g00478 Cla-Chr11:5471599 Cla05g02357 Cla-Chr5:35159817 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80593 PF00069 Pkinase 1.10E-44 CL0016 Cla PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g02357 - - csv:101208127 1194.87