Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cla05g02357 | ATGGTTCAAATGGGAATTATTAGAATAAAAGTTTCCATTTTCTTCTTCTTCTTCTTCTTCTTCTTCTTATGGAATTCTTCAGTAAATGGTTTGCTTACTGCAAAAGGTGTCAACTATGAAGTTCAAGCCTTGATGGCCATTAAAGCTGCTTTGAAAGATCCACATTCTGTTCTTAATTGGGATGAAAACGCTGTGGATCCATGTAGTTGGAGCATGATTACTTGTTCTTCAGAGAAATTTGTCATTAGCTTAGGAGCTCCAAGTCAGAACTTGTCCGGTAGCCTGTCGCCGAGCATCGGAAATTTGACGAATCTTCAGTCTGTGCTTCTACAGGACAACAATATATCAGGAACAATCCCAATGGAGCTTGGGAACATACCTAGCCTTGACACTCTTGATCTTTCAAGCAATGGCTTCCATGGAGAAATTCCCACTTCTCTTTCCCATCTCAAGAGTCTTCAATACTTGAGGCTTAATAACAACAGTCTTTCTGGAGCTATTCCTTCATCTTTGGCCAACATGACTCAGCTGGCATTGTTGGACCTGTCTTTTAATAATCTTAGTGGCCCATTGCCCAGATTGCTAGCTAAAACATACAACCTTGCTGGGAATTCTCTCATTTGCTCACCTGGGTCAGAGCATAGCTGCAATGGAACTGCTCCACCTCTTTTATTTGCAGTCAATACACCTCAAAAGCCACAACCTTCTGGGAGATCCAAGGGCCAAAAATTAGCCTTAGCTTTTGGCTCAAGCCTTGGATGTGTTTTTCTGTTAACTATTGGGTTTGGCTTCTTTATTTGGTGGAGGCAACGACACAACCAGCAGATTTTCTTTGATGTTAATGACCAAAGATTTGAAGAAGTTTGCCTTGGGAACCTAAGGATCTTCCAGTTCAGAGAGCTTCAAGCTGCTACAAACAACTTCAGCAGCAAAAACTTGGTGGGAAAAGGTGGATTTGGGAATGTATACAAAGGGTACCTTCAAGATGGTACGGTTATAGCTGTGAAGAGGTTAAAAGATGGAAATGCAATGAGAGGAGAAATCCAATTCCAGACTGAAGTTGAGATGATCAGCTTAGCCGTGCACCGGAACCTCCTCCGTCTCTATGGGTTCTGTATGACAACCACAGAGAGACTTTTGGTTTACCCCTATATGTCTAACGGCAGTGTTGCATCCCGTCTCAAAGCAAAGCCAGCTCTGGATTGGAGCACCAGGAAAAGAATAGCATTGGGAGCAGCAAGAGGGTTACTGTATTTGCATGAGCAGTGTGATCCTAAGATCATACACAGGGATGTCAAGGCAGCAAATATATTGCTTGATGATTATTGCGAGGCTGTGGTGGGAGATTTTGGATTGGCAAAGCTGTTGGATCACAGAGATTCGCATGTGACCACTGCTGTACGAGGAACTGTTGGCCATATAGCTCCTGAGTATCTCTCCACTGGCCAATCTTCTGAGAAAACTGATGTGTTTGGATATGGAATTCTTCTTCTTGAGTTGATCACTGGACAGAGAGCTCTTGAATTTGGAAAAGCTGCTAATCAGAAAGGAGCCATGCTTGATTGGGTCAAGAAAATTCACCAAGAAAAGAAGCTTGAAATACTAGTCGATAAGGATCTGAGGAACAATTACGACAGGATTGAACTTGAAGAAATGGTTCAAGTAGCTCTTTTATGCACACAGTATCTTCCAACTACCAGACCTAAGATGTCTGAAGTGGTCAGAATGCTTGAAGGGGATGGACTTGCGGAGAAATGGGAAGCTTCTCAGAGGGCAGATGCAAACAGGTACAGAGTCAATGAATTCTCCTCGTCAGAGCGATACTCTGATCTAACAGATGATTCTTCCCTGCTTGCACAAGCCATGGAGCTTTCTGGACCAAGATGA | 1887 | 42.98 | MVQMGIIRIKVSIFFFFFFFFFLWNSSVNGLLTAKGVNYEVQALMAIKAALKDPHSVLNWDENAVDPCSWSMITCSSEKFVISLGAPSQNLSGSLSPSIGNLTNLQSVLLQDNNISGTIPMELGNIPSLDTLDLSSNGFHGEIPTSLSHLKSLQYLRLNNNSLSGAIPSSLANMTQLALLDLSFNNLSGPLPRLLAKTYNLAGNSLICSPGSEHSCNGTAPPLLFAVNTPQKPQPSGRSKGQKLALAFGSSLGCVFLLTIGFGFFIWWRQRHNQQIFFDVNDQRFEEVCLGNLRIFQFRELQAATNNFSSKNLVGKGGFGNVYKGYLQDGTVIAVKRLKDGNAMRGEIQFQTEVEMISLAVHRNLLRLYGFCMTTTERLLVYPYMSNGSVASRLKAKPALDWSTRKRIALGAARGLLYLHEQCDPKIIHRDVKAANILLDDYCEAVVGDFGLAKLLDHRDSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGYGILLLELITGQRALEFGKAANQKGAMLDWVKKIHQEKKLEILVDKDLRNNYDRIELEEMVQVALLCTQYLPTTRPKMSEVVRMLEGDGLAEKWEASQRADANRYRVNEFSSSERYSDLTDDSSLLAQAMELSGPR | 628 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 35159817 | 35162905 | + | ClCG05G023320.2 | Cla05g02357 | 273847 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cla05g02357 | 628 | PANTHER | PROTEIN NSP-INTERACTING KINASE 2-LIKE | 12 | 628 | - | - | |
Cla05g02357 | 628 | Pfam | Leucine rich repeat | 127 | 187 | IPR001611 | GO:0005515 | |
Cla05g02357 | 628 | Pfam | Protein kinase domain | 309 | 575 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cla05g02357 | 628 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 427 | 439 | IPR008271 | GO:0004672|GO:0006468 | |
Cla05g02357 | 628 | Pfam | Leucine rich repeat N-terminal domain | 38 | 76 | IPR013210 | - | |
Cla05g02357 | 628 | ProSitePatterns | Protein kinases ATP-binding region signature. | 314 | 336 | IPR017441 | GO:0005524 | |
Cla05g02357 | 628 | PANTHER | SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 | 12 | 628 | - | - | |
Cla05g02357 | 628 | Gene3D | Phosphorylase Kinase; domain 1 | 277 | 384 | - | - | |
Cla05g02357 | 628 | SUPERFAMILY | Protein kinase-like (PK-like) | 286 | 578 | IPR011009 | - | |
Cla05g02357 | 628 | ProSiteProfiles | Protein kinase domain profile. | 308 | 563 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cla05g02357 | 628 | SMART | serkin_6 | 308 | 563 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cla05g02357 | 628 | Gene3D | Ribonuclease Inhibitor | 37 | 218 | IPR032675 | - | |
Cla05g02357 | 628 | Gene3D | Transferase(Phosphotransferase) domain 1 | 385 | 597 | - | - | |
Cla05g02357 | 628 | SUPERFAMILY | L domain-like | 40 | 201 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cla01g02327 | Cla-Chr1:37065220 | Cla05g02357 | Cla-Chr5:35159817 | 0 | dispersed | |
Cla05g02357 | Cla-Chr5:35159817 | Cla06g01266 | Cla-Chr6:25917869 | 0 | dispersed | |
Cla01g00725 | Cla-Chr1:8419245 | Cla05g02357 | Cla-Chr5:35159817 | 0 | transposed | |
Cla02g00011 | Cla-Chr2:154226 | Cla05g02357 | Cla-Chr5:35159817 | 8.48E-167 | transposed | |
Cla02g00672 | Cla-Chr2:7703190 | Cla05g02357 | Cla-Chr5:35159817 | 5.77E-38 | transposed | |
Cla03g01350 | Cla-Chr3:28940577 | Cla05g02357 | Cla-Chr5:35159817 | 8.69E-36 | transposed | |
Cla07g00886 | Cla-Chr7:24514741 | Cla05g02357 | Cla-Chr5:35159817 | 0 | transposed | |
Cla08g00308 | Cla-Chr8:7302249 | Cla05g02357 | Cla-Chr5:35159817 | 0 | transposed | |
Cla08g01742 | Cla-Chr8:29908666 | Cla05g02357 | Cla-Chr5:35159817 | 0 | transposed | |
Cla09g01205 | Cla-Chr9:15035163 | Cla05g02357 | Cla-Chr5:35159817 | 4.42E-35 | transposed | |
Cla09g01478 | Cla-Chr9:28430394 | Cla05g02357 | Cla-Chr5:35159817 | 0 | transposed | |
Cla10g00875 | Cla-Chr10:20028784 | Cla05g02357 | Cla-Chr5:35159817 | 0 | transposed | |
Cla11g00478 | Cla-Chr11:5471599 | Cla05g02357 | Cla-Chr5:35159817 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
80593 | PF00069 | Pkinase | 1.10E-44 | CL0016 | Cla | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cla05g02357 | - | - | csv:101208127 | 1194.87 |