Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g02364 ATGGCGTCTTCTCCGACTCCCATCTCTCCACTATCTTTTCCCAATCCAATACCAAGATCAAGATCAAAACCAAAACCAATACCAAACAAACCGCCGTCTTCATTGCCTCCTGCCTTGAACCCCAACCCCAAATCTCCGCCCAAGGAACTTTACTTCAACCGCGATGGCTCTACCTTTAAAAAACTTCAGGTCGGGGTTAATCTGGTGGCGGATCTGGTGGGTGTTACATTAGGGCCGAAGGGAAGGAATGTGGTACTTCAGAACAAATATGGACCGCCCAAGATAGTCAACGACGGTGAAACTGTCCTGAAAGAGATTGAACTGGAAGACCCTTTAGAGAACGTTGGGGTGAAATTGGTGAGACAAGCTGGTGCAAAGACAAATGACCTTGCTGGTGATGGTTCCACTACATCTGTCGTTCTTGCCCAGGGATTGATTGCCGAGGGTATGAAGGTTATTTCGTCTGGCATGAATCCTGTTCAAATTGCACGTGGGATTGAGAAGACTGCAAAAGCACTAGTTTCTGAGCTGAAATTGATGTCAAGAGAGGTTGAAGATCATGAGATAGCACATGTGGCCGCAGTTAGCGCAGGGAATGATTATGCTGTAGGAAATTTGATCTCAGATGCCTTACGTCAAGTTGGAAGGAAGGGAGTCGTCCAAATTGAAAAAGGGAAGAGTATCGATAACAGTCTGCAAATTGTTGAAGGGATGCAATTTGACCGTGGATATTTATCTCCATACTTCGTTACTGATAGAAAGAAGATGGTAGTAGAATTTCATGATTGCAAGTTACTGTTGGTCGACAAAAAAATCTCAGATCCAAAGGAGATGTTTAAAATATTGGACAGTGCTGTGAAAGAGAAATACCCAATTGTGATATTGGCAGAGGGCATTGAGCAGGAAGCTCTGGCTCCAGTAATTAGGAATAAACTTAGAGGTGTGCTGAAGGCAGCTGCTATCAAGGCTCCTGCCTTTGGCGAGCGCAAGAGTCACTACTTAGATGACATAGCCACCTTAACTGGAGCTACTGTGGTTAGAGAAGATAGTGGATTCACGTTAGAAAAGACCGGCAAAGAGGTATTGGGCTCTGCTAGTAAGGTTGTTATATCAAAACATTCCACACTAATAGTTACAGATGGGAATACTCGGGAAGCTGTTCGGAAAAGGGTCTTACAAATTCAAAAGCTTATGGAGGTGCTGGAATCATCCTTTATCTATGCTGAGATATCCTACATTTCGAGAGACATACTATCATCTATTCTGCAGAATACTGAGGAAAATTTTCCGAAGAAGATATTGAATGAGAGAATTGCAAGATTATCTGGGCGAATTGCAATACTTCAGGTAGGAGCACAAACTGAAGTTGAGTTGAAGGATAGACAGTTAAGGATTGAGGACGCTTTGAATGCATCAAAGGCTGCTATTGAAGAAGGTGTTGTTGTTGGTGGAGGTTGTTGTCTTTTAAGGCTGTCTACGAAGGTGGATGCTATAAAGAAAGTCCTGGAAAATGACGAACAGATGATTGGAGCCGAAATTTTCAAAAGGGCTTTGAGTTATCCTACAAAACTAATAGCGAGAAATGCCGGTGTCAATGGAAATGTTGTAATAGATAAGGTTCTAATCAACAATGATATGGATTATGGATATAATGCGGCCACAGACCGTTACGAGGATCTAATGAAAGCTGGAATCTTGGACCCTTCAAAGGTTGTTAGATGTTGCCTGGAGCATGCAGCTTCTGTTGCCAAAACTTTTCTGACATCCGATGCTGTTGTAGTTGATATGAAGGAACCAGAACCCATACCAAGAAGAACACCGATGCCAATCTCAGGTAAGCGGCATCAGACAAATGGGTCTCTAGCTCCACGGACAAGATCAGAGTATGTGGAGAGTATTCTCAAGTTGAAGGGATTCAATGGGAGTACTGTTTTAAGACAGCTGCACGGTACTTTAGTCACCAGACAAATGGGTCTCGTCTCTGGAGCCACCATTCAATGGGCATGTAGCCCAATTTGTCGCTGA 2025 43.41 MASSPTPISPLSFPNPIPRSRSKPKPIPNKPPSSLPPALNPNPKSPPKELYFNRDGSTFKKLQVGVNLVADLVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENVGVKLVRQAGAKTNDLAGDGSTTSVVLAQGLIAEGMKVISSGMNPVQIARGIEKTAKALVSELKLMSREVEDHEIAHVAAVSAGNDYAVGNLISDALRQVGRKGVVQIEKGKSIDNSLQIVEGMQFDRGYLSPYFVTDRKKMVVEFHDCKLLLVDKKISDPKEMFKILDSAVKEKYPIVILAEGIEQEALAPVIRNKLRGVLKAAAIKAPAFGERKSHYLDDIATLTGATVVREDSGFTLEKTGKEVLGSASKVVISKHSTLIVTDGNTREAVRKRVLQIQKLMEVLESSFIYAEISYISRDILSSILQNTEENFPKKILNERIARLSGRIAILQVGAQTEVELKDRQLRIEDALNASKAAIEEGVVVGGGCCLLRLSTKVDAIKKVLENDEQMIGAEIFKRALSYPTKLIARNAGVNGNVVIDKVLINNDMDYGYNAATDRYEDLMKAGILDPSKVVRCCLEHAASVAKTFLTSDAVVVDMKEPEPIPRRTPMPISGKRHQTNGSLAPRTRSEYVESILKLKGFNGSTVLRQLHGTLVTRQMGLVSGATIQWACSPICR 674
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 35210036 35215378 + ClCG05G023380.2 Cla05g02364 273854

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g02364 674 Gene3D GroEL 237 442 IPR027409 -
Cla05g02364 674 SUPERFAMILY GroEL equatorial domain-like 56 593 IPR027413 -
Cla05g02364 674 SUPERFAMILY GroEL-intermediate domain like 428 478 IPR027410 -
Cla05g02364 674 ProSitePatterns Chaperonins cpn60 signature. 474 485 IPR018370 GO:0005524|GO:0006457
Cla05g02364 674 PRINTS 60kDa chaperonin signature 467 488 IPR001844 GO:0042026|GO:0140662
Cla05g02364 674 PRINTS 60kDa chaperonin signature 129 156 IPR001844 GO:0042026|GO:0140662
Cla05g02364 674 PRINTS 60kDa chaperonin signature 419 444 IPR001844 GO:0042026|GO:0140662
Cla05g02364 674 PRINTS 60kDa chaperonin signature 73 99 IPR001844 GO:0042026|GO:0140662
Cla05g02364 674 CDD GroEL 48 595 IPR001844 GO:0042026|GO:0140662
Cla05g02364 674 SUPERFAMILY GroEL apical domain-like 230 405 IPR027409 -
Cla05g02364 674 SUPERFAMILY GroEL-intermediate domain like 187 250 IPR027410 -
Cla05g02364 674 Gene3D - 60 594 IPR027413 -
Cla05g02364 674 Pfam TCP-1/cpn60 chaperonin family 69 596 IPR002423 GO:0005524
Cla05g02364 674 PANTHER CHAPERONIN 60 SUBUNIT BETA 4, CHLOROPLASTIC 419 602 - -
Cla05g02364 674 MobiDBLite consensus disorder prediction 9 44 - -
Cla05g02364 674 PANTHER CHAPERONIN 60 SUBUNIT BETA 4, CHLOROPLASTIC 22 405 - -
Cla05g02364 674 Gene3D - 183 479 IPR027410 -
Cla05g02364 674 MobiDBLite consensus disorder prediction 1 49 - -
Cla05g02364 674 MobiDBLite consensus disorder prediction 600 622 - -
Cla05g02364 674 PANTHER 60 KDA HEAT SHOCK PROTEIN, MITOCHONDRIAL 22 405 - -
Cla05g02364 674 PANTHER 60 KDA HEAT SHOCK PROTEIN, MITOCHONDRIAL 419 602 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g02364 K04077 groEL, HSPD1; chaperonin GroEL [EC:5.6.1.7] - csv:101209342 985.326
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla03g01403 Cla-Chr3:29525424 Cla05g02364 Cla-Chr5:35210036 0 dispersed
Cla05g02364 Cla-Chr5:35210036 Cla09g00880 Cla-Chr9:8994778 3.56E-141 dispersed
Cla11g00948 Cla-Chr11:16678288 Cla05g02364 Cla-Chr5:35210036 1.23E-07 dispersed
Cla05g02364 Cla-Chr5:35210036 Cla09g00063 Cla-Chr9:611136 9.40E-127 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1020 . . . . . Bpe10g00922 . Bma15g00101 . Cmo18g01097 . Cma18g01075 . Car18g00998 Sed06g1826 Cpe09g00248 . Bhi07g01420 Tan04g0938 Cmetu10g1844 Lac13g0422 Hepe10g1836 . . Cla05g02364 Cam05g2534 Cec05g2563 Cco05g2602 Clacu05g2529 Cmu05g2389 Cre05g2505 . . . . Lsi04g00325 Csa05g02544 . Cme10g00325 Blo06g00949 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001807 3 2 3 1 3 2 3 1 2 1 2 2 3 2 2 2 2 4 3 2 2 2 1 2 2 2 2 4 2 3 67