Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g02365 ATGAAAGCTGACAGTCTAAGCACACATAAGCTTGCTGTTCTGCACCCAGTGAGACCTTTCATTAGAGGTTCTTTCCCCCGCTTAAAGCTCTTCTCTTCTTTCGCTTTCATTCCCAAAGGTTCCCCTCGACCAGGTTCCGTCCGCTTGCCTCAGAATTCCTGCTTCAAGGGTGTGCGTTATGACTGTCCAGTAATGGGTGCAACGGAATTATCTGATCTCGAGGATGTGGATTTGTTGGTGGAGATGTGCATTACGCATACACTGCCACCGGCTCTGACGCTTAAGCAGGGGCTGGAGAGTATTAGTGAGGCCATTGAAAAGTTGAAATTAGAATCTCCACGTTCTTCTCACGGAGTTTTCAGGTTTCAGGTGGCTGTTCCCCCGAGTACAAGAGCTCTTTTGTGGTTCTGTTGTCAACCAGAGTCATCTGAAGTGTATCCTATCTTTTTCCTTTCCAATGAGAAGGACGCCACAATTAAGTCACTGTACTTGAATGATACCCGTGGTGTTTTTGGAATTGGTACTGCAATTTACTTTGCAAGCTTGGCTTCCACTTCATCGAAACGAAGTACATTGAAAAGGTTTCTCATGAATGATTCAGCTCCTATTATGGCTTATGGTTTTGTTAATGCTAATGCCGGGGAGACATCTTCGCTGAAGAGTGAGGCTGGTCATTCTTTCTTTTGTGTTCCCCAAATTGAGTTGAGTGAGTACGAGGGCATTTCTGTTCTCTCTGCAACACTTGCATGGGGTGAATCTTTCCCTTGTACATTTGAGGAAGCTCTCCATTCTTTGGGCTCATCTATCTACCAGATCAGCACTAATTTTCCATCTATTGAAAACTGCCGGTACAAATATATAAGATCTTCATTAACAGCTTCAAAATTTGTGGATGGAACAAATCAGATGATTCTTTCAAGACGGATATTGCCAATACAAGACTTGCATCACCTTCTTGCTTTTGCACTTGTTTTCCCTCCATCTTCTTTGATTGTGAGGGAGATACGTATGCTGGGTGGGTTGGGGGGGATGGAAATGATTGCATACATGAAAGTGCTTTCTGTAGCTGGTGAAAGTTTCAGGAATGGCATCATGGAAATGGAGTCTGCACTCTCCCATCAATTCTGCATTAGGATTTCACCAAGTGTTGCCGTTGCATGCAATATGTTGGATCATATCAACAAAACTGGTAACTCAGAGCAAGAGCATGCCAACATTAATGCTCTCTGGGCATCGCTCATAGTTGAAGAATGTTCTCGTCTTGCTCCTGGATCAAGATCATCCCCTCTTGCCATAGCTGCTGCAAGTCATCCCCTTATGACATGTATTGCCTGCTTTGATGAACGCTCTCTTGCTTTTCATGCTATTGGGTATGCCAAAGGATCTCATAGCCCAGCAGTTGTAATCACATCGTCAGGCACTGCTGTTTCAAATCTTCTTCCTGCTGTTGTTGAAGCTAGTCAAGATTTTCTTCCTCTTTTATTGCTTACAGCTGACCGTCCCCCGGAGCTACAGGACGCAGGAGCAAATCAAGCAATTAATCAGGTAAACCATTTTGGTTCATTTGTGAGGTTCTTCTTCAATCTTCCTGCTCCAACTGATCAAATTCCCGCCAGAATGGTACTTACCACTCTCGATTCTGCTGTACATTGGGCAACCTCTTCACCCTGTGGCCCCGTTCACATAAACTGTCCATTTAGAGAGCCACTGGAAAATAGTCCAAGTCCATGGAATTTGAGTTGCTTAAATGGATTACACATTTGGTTATCAAGCACTGAAGTTTTTACCAAATATATTCGACTTGAAGCGTCTCCAATGTCTATTGATTCTTTTGGTCAAATGGCTGAGGTTTTGAAAGTAATCCGTGGAGCCAGGAAGGGAATTCTACTTCTTGGATCAATTCAATCAGAGGATGAGATATGGGCTGCTTTTCTATTGGCCAAACATATTTCATGGCCTATAGTGGCTGATGTATTGTCTGGTTTACGATTAAGAAAGAGTTTGTCTGCATTCCTAGAAATGGAAAATAACTTTTTCTTTGTCGATCACCTTGATCACACTTTGCTTTCTGAATCGGTGAGAAAATGGCTAAATTTTGACGTGATTATTCAGATTGGAAGCAGGGTAACAAGCAAACGTGTTTCAAAGATGCTTGAGGACTGCAGTCCCTGTTCATACATCATGGTTGATAAGCATCCAGGTCGTCATGATCCATCACATATTGTAACCCATAGAATTCAAAGCACCGTCTTAGAATTTGTTGGTTGTTTACTTAAAGCTGATTTTCCTCTCAATAGGAACAAGTGGACTGCTACTTTACGAGCATTGAATTTGATGGTTGAATGGGAAATACAATTTCAAATTTCTGCTAACTACTCTCTATCTGAGCCACAAGTTGCTCAGGTAATCTCAGAAGCACTTCCATTTGATTCTGTTTTGTTCCTGGGGAACAGCATGCCAATTCGTGATGTAGATATGTATGCATATGGCTGGTCAAAATGCAACGACAGTGTAGCGGCTAGACCATTAAACTTACGACTGCCATTTTGCTGGATATGGACTTCTGGAAATAGGGGAGCCAGTGGTATTGACGGACTTCTTAGCACAGCAGTTGGTTTTTCTGTTGGATGCAACAAACGAGTGCTTTGTGTCGTTGGAGATGTTTCTTTCCTTCATGATACAAATGGCTTAGCAATTTTGAACCAGAGGATGACGAGGAAACCTGTGACTGTAGTTGTAATCAATAATAATGGTGGGGCAATCTTCAGTCTCCTTCCTATCAAGGACAAAGTAGAGGCAGCAATACTAGACCAATTCTTCCACACCTCTCACAAGGTTTCACTCCGAAGCCTATGCGTGGCACATGGCTTGAAGCATTTACATGTACGGACAAAGATGGAACTTCAAGATGCTTTATTTATGTCTCATCATGAAGAAAATGATTGCATAATCGAGGTCGAAAGTTCCATTGATGCCAATACTGACTTCCACAGTGTCTTGAGGAAGTTCACTTGTCAAGCAGTAGAGCATGGTTTACGCATCTTTTCAAGGCTTTATTCTGAAGAATCTGTTTCACCTGGACTCTTCCTCTGCAAGATAAGTAGAATGGAATGCACATTGTTCAGAATCCCACTATGTGCTCCACCTACAACTTCATCTGGTTCTATTGATCAAGTCAGTCGGAAGTTCTTCAGAGAAGGTTTTATTTTGTCTTTGTTTCTGGAGGACGGGAGTCTTGGCCTTGGTGAGGTTTCACCCCTTGACATCCACAGAGAGAACCTACTAGATGTGGAAGAGCAACTTAAGTGTCTCATTCATATATTAAAGGGAGCCGAGATCAACAGCTCCATTCCTCTACTAAGGGGCTCATTTTCATCTTGGATTTGCCATGAACTGGGAATACCAGTAGGTGCTCCTATATTCCAGCGGAGAAAAGGTTGCAGCTTGTTAGATGTACTCCAGCATCGGTTAGATGAAGAAAAGAACTTGACAACTTCATCAAAAGTTCAAATTTGTGGGCTGTTGGATTCTGGTGGAACTCCATCTGAGGTAGCCCGACAACGGAATGTCATGTATGATGCTGCAGTTGTACAGGAAGTAAGGAAAAAGCTTGGCAACCAAATTGAACTCCGCGTTGATGCCAATCGGAACTGGAGCTATGAAGAAGCTATTTTATTTAGCTCTTTGGTGAAGGACTGTGGCCTGCAATATATTGAGGAACCAGTCATGGATGAAGATGCTATTATTAAATTCTGTGAAGAGAGTGGTTTGCCTGTTGCACTGGATGAAACTGTCGATCATATTCAAGACAATCCCGTGAAAGAACTAGCGAAGTATGCTCATCCAGGAATTGTTGCTATAGTTATAAAACCAAGTGTCATTGGCGGATTTGAAAATGCAGCATTAGTAGCGAGGTGGGCACAACAACATGGAAAAATGGCTGTTGTTAGTGCTGCATTTGAAAGTGGTGTAGGTTTGTCTGGATATATACACTTATCCTGTTATCTGGACCTTCAGAATGCAGATGTTAGAAAACTGATGAATATTCAACCAGCCCCATCTATAGCCCACGGTCTAGGAACTTACCGTTGGCTTGAAGAAGATGTAACTGTCAATCCTCTCAGAATTCGCCGTGACCCTTATAGCGGCATTATTGAAGCATCTGTTGCTGAGGCTAATCGACTTCTAAATAGTTTTGAAATCAACCAGAAGTTTGTTTGTAGAAAATTTACTGAAGAGCAAGTTCGTATGTTCAAATTAAGTGTAGACTTAAAGGGGTTCTCTTATTCAATAAAAGTTCTAGAGGTTGGACAAAGAACAAACGATAATGTGCTCTTCTTTCTTCATGGATTTCTTGGAACTGGTGAAGACTGGATTAAAATCATGAAAGGCGTCTCAGGTTCAGCGAGATGCATTTCTCTTGACCTTCCTGGTCACGGGGAATCAACGACCCAAAAGAATGATTGTGATGTTCATGGTTTGGAGGAACCAAGTTTTTCAATGGAGGTTGTTGCTGGTCTACTGTATAAGTTGATTCATCATCTTGCTCCTGGTAAAGTTATAGTTAACCTTGTAGGGTATTCAATGGGGGCTAGGATTGCAATGTACATGGCCCTGAGATTTGGTGATAAGATTGGAAGAGCTGTTATAATATCTGGAAGCCCCGGATTAAAAGACAAGATGGCAAGAAGAATCCGCAGAGTTAAAGATGATTCTAGAGCACGAATCCTTAAGGTCTATGGCTTACAAAGCTTTCTTGAGGCGTGGTATTGTGGGGAACTATGGAAAAGTTTAAGAGAACATCCACATTATAGTCAAATTATTGCCAGCCGATTGAAGCACGATGATGTGCAGCATCTTGCAAAAGCTCTATCTGATTTAAGCATTGGAAGGCAGCCGCAATTGTGGGATGAATTAAAATACTGCAAAACACCACTTTCATTCATTGTTGGGGAGAAGGATACAAAATTCAAGACAATTGCACAGAAAATTCTATCTCAAATTGATATGGACAAGAAGATCAAAGACGAACCAATTGTTGACCTCCATGAAATAGTTGAGATCCCGGACTCAGGACATGCTGTCCATCTGGAGAATCCTCTTGCTGTTATCAATGCATTAAGTAGATTTCTAATAAGGAGTAGAACACACTGCTCTTACAATTCGGATTTCCCAGGCCAAGTCGCAATTACGCATGAGACCCGCCTTCTGTAA 5214 42.06 MKADSLSTHKLAVLHPVRPFIRGSFPRLKLFSSFAFIPKGSPRPGSVRLPQNSCFKGVRYDCPVMGATELSDLEDVDLLVEMCITHTLPPALTLKQGLESISEAIEKLKLESPRSSHGVFRFQVAVPPSTRALLWFCCQPESSEVYPIFFLSNEKDATIKSLYLNDTRGVFGIGTAIYFASLASTSSKRSTLKRFLMNDSAPIMAYGFVNANAGETSSLKSEAGHSFFCVPQIELSEYEGISVLSATLAWGESFPCTFEEALHSLGSSIYQISTNFPSIENCRYKYIRSSLTASKFVDGTNQMILSRRILPIQDLHHLLAFALVFPPSSLIVREIRMLGGLGGMEMIAYMKVLSVAGESFRNGIMEMESALSHQFCIRISPSVAVACNMLDHINKTGNSEQEHANINALWASLIVEECSRLAPGSRSSPLAIAAASHPLMTCIACFDERSLAFHAIGYAKGSHSPAVVITSSGTAVSNLLPAVVEASQDFLPLLLLTADRPPELQDAGANQAINQVNHFGSFVRFFFNLPAPTDQIPARMVLTTLDSAVHWATSSPCGPVHINCPFREPLENSPSPWNLSCLNGLHIWLSSTEVFTKYIRLEASPMSIDSFGQMAEVLKVIRGARKGILLLGSIQSEDEIWAAFLLAKHISWPIVADVLSGLRLRKSLSAFLEMENNFFFVDHLDHTLLSESVRKWLNFDVIIQIGSRVTSKRVSKMLEDCSPCSYIMVDKHPGRHDPSHIVTHRIQSTVLEFVGCLLKADFPLNRNKWTATLRALNLMVEWEIQFQISANYSLSEPQVAQVISEALPFDSVLFLGNSMPIRDVDMYAYGWSKCNDSVAARPLNLRLPFCWIWTSGNRGASGIDGLLSTAVGFSVGCNKRVLCVVGDVSFLHDTNGLAILNQRMTRKPVTVVVINNNGGAIFSLLPIKDKVEAAILDQFFHTSHKVSLRSLCVAHGLKHLHVRTKMELQDALFMSHHEENDCIIEVESSIDANTDFHSVLRKFTCQAVEHGLRIFSRLYSEESVSPGLFLCKISRMECTLFRIPLCAPPTTSSGSIDQVSRKFFREGFILSLFLEDGSLGLGEVSPLDIHRENLLDVEEQLKCLIHILKGAEINSSIPLLRGSFSSWICHELGIPVGAPIFQRRKGCSLLDVLQHRLDEEKNLTTSSKVQICGLLDSGGTPSEVARQRNVMYDAAVVQEVRKKLGNQIELRVDANRNWSYEEAILFSSLVKDCGLQYIEEPVMDEDAIIKFCEESGLPVALDETVDHIQDNPVKELAKYAHPGIVAIVIKPSVIGGFENAALVARWAQQHGKMAVVSAAFESGVGLSGYIHLSCYLDLQNADVRKLMNIQPAPSIAHGLGTYRWLEEDVTVNPLRIRRDPYSGIIEASVAEANRLLNSFEINQKFVCRKFTEEQVRMFKLSVDLKGFSYSIKVLEVGQRTNDNVLFFLHGFLGTGEDWIKIMKGVSGSARCISLDLPGHGESTTQKNDCDVHGLEEPSFSMEVVAGLLYKLIHHLAPGKVIVNLVGYSMGARIAMYMALRFGDKIGRAVIISGSPGLKDKMARRIRRVKDDSRARILKVYGLQSFLEAWYCGELWKSLREHPHYSQIIASRLKHDDVQHLAKALSDLSIGRQPQLWDELKYCKTPLSFIVGEKDTKFKTIAQKILSQIDMDKKIKDEPIVDLHEIVEIPDSGHAVHLENPLAVINALSRFLIRSRTHCSYNSDFPGQVAITHETRLL 1737
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 35217167 35233938 + ClCG05G023390.2 Cla05g02365 273855

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g02365 1737 Pfam Middle domain of thiamine pyrophosphate 584 815 IPR032264 -
Cla05g02365 1737 SUPERFAMILY Enolase C-terminal domain-like 1187 1378 IPR036849 -
Cla05g02365 1737 Pfam Enolase C-terminal domain-like 1189 1352 IPR029065 -
Cla05g02365 1737 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 421 577 IPR029061 -
Cla05g02365 1737 Pfam alpha/beta hydrolase fold 1443 1553 IPR000073 -
Cla05g02365 1737 Gene3D alpha/beta hydrolase 1435 1711 IPR029058 -
Cla05g02365 1737 SUPERFAMILY DHS-like NAD/FAD-binding domain 559 776 IPR029035 -
Cla05g02365 1737 Gene3D - 793 1003 - -
Cla05g02365 1737 SMART MR_MLE_2 1150 1258 IPR013342 -
Cla05g02365 1737 Gene3D - 1158 1382 IPR036849 -
Cla05g02365 1737 ProSitePatterns Mandelate racemase / muconate lactonizing enzyme family signature 2. 1210 1241 IPR018110 GO:0009063
Cla05g02365 1737 Gene3D - 402 591 - -
Cla05g02365 1737 Hamap 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase [menD]. 404 1004 IPR004433 GO:0009234|GO:0030976|GO:0070204
Cla05g02365 1737 Pfam Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 846 972 IPR011766 GO:0003824|GO:0030976
Cla05g02365 1737 Gene3D - 610 786 - -
Cla05g02365 1737 PANTHER 2-SUCCINYL-5-ENOLPYRUVYL-6-HYDROXY-3-CYCLOHEXENE-1-CARBOXYLATE SYNTHASE 170 1713 IPR004433 GO:0009234|GO:0030976|GO:0070204
Cla05g02365 1737 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 793 986 IPR029061 -
Cla05g02365 1737 Gene3D - 1034 1136 IPR029017 -
Cla05g02365 1737 CDD TPP_SHCHC_synthase 794 989 - -
Cla05g02365 1737 SUPERFAMILY alpha/beta-Hydrolases 1431 1711 IPR029058 -
Cla05g02365 1737 TIGRFAM menD: 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase 421 874 IPR004433 GO:0009234|GO:0030976|GO:0070204
Cla05g02365 1737 Pfam Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 423 573 IPR012001 GO:0030976
Cla05g02365 1737 CDD TPP_PYR_MenD 412 566 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g02365 K14759 PHYLLO; isochorismate synthase / 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase / 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase / o-succinylbenzoate synthase [EC:5.4.4.2 2.2.1.9 4.2.99.20 4.2.1.113] - csv:101217012 3001.08
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g02365 Cla-Chr5:35217167 Cla06g01606 Cla-Chr6:29583470 1.01E-18 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1016 . . . . . . . . Cmo04g01638 . . . Car04g01619 . . . Cpe01g01391 Bhi07g01424 . . . . . . Cla05g02365 Cam05g2535 Cec05g2564 Cco05g2603 Clacu05g2531 Cmu05g2391 Cre05g2507 . . . . Lsi04g00326 . Chy10g01084 Cme10g00326 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005896 1 7 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 0 1 1 1 1 1 1 2 37