Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g02367 ATGGATATTGGTGACAGAGATAAATTTAGACTAGAAAGTAGCATAGAGGATTCGATCAACTGTTCAAATAGCATGTCATCAGATTGGCGATTCAGCGAAATGACTCTTACGAGTATGCCAATCGGTTTGGTTTTGCCAGGGAATGTGGATGTAGTTAGGAACCAGGATATGGTTGGTTGTTCTTCTTCCACTGCTCCTGTGGTAGAGTCATTTAGCTCTACTATCTGGGAACAAGCAGCTAATTGTCAAAACTTGGGAATTTGCAACATTCAAGGCCATAACAACTCTACTACTTCAAATAGCATAGCAATGAGTAAGGCCAGTGGCTGTCCAGTTTCTTTGAGCAGTGACATTGATAGAACACTTGACATCAGCTGGAACCTGTCACATAATATGTTAAAAGGGGGAGTTTACCTACCTAATTTTCCCAGTGTGATCCCGCCAAGCTTATCTCAACTTCCAGCTGATTCTTCATTTATTGAACGTGCAGCCAGGTTTTCCTGCTTTAGTGGTGGAAATTTTGGTGATATTGTTGGCCATTTCAGCATTCCTGAGCCTATTGGTGTTTTTTCCAGAGGCATGGGAGTAATACCTGAGAGATGGGATGAGATTCCACGAAATGGGTTAGGTTCAGTATTCGGAACTGGAGGACAATTTCAAAGAAACATGGTTAACAGTGAATCTTCCAAGCCTCTTTCTTTGACTAATGAACATGGAGCTACTGAAAGGGGATCACCTAAAAATGGAAGCCCTTTGAAATGGGATGATCGTGGTAAACATGCTGTTGATGGTTCTGCTAATGAATCTGATGAAGCTGAGTTTAGCGGTCATGATGGTTCAGGTGAGCCATGTACGTTAGAGGCCCCAGGTAAGGAACTTTCTGCCAAGGGCCTCGGCTCAAGGAAAAGGAAAAGAAGTGGACAGAAGACTGAACTTGATCAAGCCAATGGACCTCTGCAACAAACTACGGTTTCAGCTAAGGATGATGCTGAAACTCAGCGAAAAGGAGATCAAAATCCGAGTTCAACTGCAAACAAGTGTACAGGAAAACATAATAAACAGGTACCTCAACCTTCTGATCCACCAAAGGAAGAGTATATTCATGTTAGAGCTCGAAGAGGCCAGGCAACAAACAGCCATAGTCTTGCAGAGAGGGTAAGGAGGGAGAAGATCAGTGAGAGGATGAAGTTTCTTCAAGAACTAGTCCCTGGTTGCAGCAAGGTTACTGGAAAGGCGGTGATGCTAGATGAAATCATTAACTATGTCCAATCACTGCAGCGACAAGTCGAGTTTTTATCAATGAAACTCGCTACCGTGAATCCAAGGTTGGATATTAACATTGATGGACTCATAGCCAAAGATATTCTTCAATCACGAGTTGGTCCATCGTCGACATTGGGATTTTCTTCACATATGCCCATTGCTTGTCCCCCACCTCATATTTCTCATAATGGACATATCCCAAGCAATTTTCCTGCCATAGGGAGCTCTGAGATGTTAAGAAGCACAATGAATTCCCAGATGACTACAAGGTCGGGTGGATTTAAGGATCCTACTCAGATAAAGAATGTGTGGGATGGTGAACTCCAAAACATTGTGCAGATGAGCTTTGGGATGTCCACTACCCCCAATTGTTTAGAAATTGAAGGTTCTATAAAAACTACCCCTCATGACAAAAACATTCAAACTGCACCCTGA 1698 42.76 MDIGDRDKFRLESSIEDSINCSNSMSSDWRFSEMTLTSMPIGLVLPGNVDVVRNQDMVGCSSSTAPVVESFSSTIWEQAANCQNLGICNIQGHNNSTTSNSIAMSKASGCPVSLSSDIDRTLDISWNLSHNMLKGGVYLPNFPSVIPPSLSQLPADSSFIERAARFSCFSGGNFGDIVGHFSIPEPIGVFSRGMGVIPERWDEIPRNGLGSVFGTGGQFQRNMVNSESSKPLSLTNEHGATERGSPKNGSPLKWDDRGKHAVDGSANESDEAEFSGHDGSGEPCTLEAPGKELSAKGLGSRKRKRSGQKTELDQANGPLQQTTVSAKDDAETQRKGDQNPSSTANKCTGKHNKQVPQPSDPPKEEYIHVRARRGQATNSHSLAERVRREKISERMKFLQELVPGCSKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPRLDINIDGLIAKDILQSRVGPSSTLGFSSHMPIACPPPHISHNGHIPSNFPAIGSSEMLRSTMNSQMTTRSGGFKDPTQIKNVWDGELQNIVQMSFGMSTTPNCLEIEGSIKTTPHDKNIQTAP 565
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 35260244 35263692 + ClCG05G023410.1 Cla05g02367 273857
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g02367 565 MobiDBLite consensus disorder prediction 249 277 - -
Cla05g02367 565 Pfam Helix-loop-helix DNA-binding domain 378 426 IPR011598 GO:0046983
Cla05g02367 565 SMART finulus 381 431 IPR011598 GO:0046983
Cla05g02367 565 CDD bHLH_AtBPE_like 365 450 - -
Cla05g02367 565 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 17 553 IPR024097 GO:0006355
Cla05g02367 565 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 373 443 IPR036638 GO:0046983
Cla05g02367 565 MobiDBLite consensus disorder prediction 296 310 - -
Cla05g02367 565 MobiDBLite consensus disorder prediction 336 355 - -
Cla05g02367 565 MobiDBLite consensus disorder prediction 221 243 - -
Cla05g02367 565 MobiDBLite consensus disorder prediction 311 327 - -
Cla05g02367 565 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 375 425 IPR011598 GO:0046983
Cla05g02367 565 PANTHER TRANSCRIPTION FACTOR BHLH49 17 553 - -
Cla05g02367 565 MobiDBLite consensus disorder prediction 221 363 - -
Cla05g02367 565 Gene3D - 372 445 IPR036638 GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g00715 Cla-Chr1:8341695 Cla05g02367 Cla-Chr5:35260244 2.82E-147 dispersed
Cla05g02367 Cla-Chr5:35260244 Cla05g02655 Cla-Chr5:37753717 2.62E-55 dispersed
Cla05g02367 Cla-Chr5:35260244 Cla02g00509 Cla-Chr2:5100515 3.97E-46 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61168 PF00010 HLH 6.30E-06 No_clan Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g02367 - - bhj:120081983 1013.83