Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g02371 ATGTCCAGAGCAATGACGACAAAGCCAATACTGTCTTTGGCTGAACTTATCTTAGTTTCCATCTCAGAAATCGTAGATTCTACAGAGTACACTGAAGAAGAACATGGGAAATTTATTGAGATTGGAAGCTACTTTTATCGAGCAGCTCTGGCTGTTGTGGAGTTGCAGGGAATAGATCCAATGCCATTTGATGAAATCCTCCAATCTCTAAACAAAAGCATCAATCATGCAAAGGAACTAGTGGAAAAGTTCCTAAATGGCATTCAACTAGTCTCAGATTCTGATCCAATTACCATTATAAATCCACTAGAAGAGGTGATAAAGGAAATGGGTGAATGCTTGAACAAGATAGCGACCGCTACATTTGAGGAGCAGAATTATGTGAAAATGGCAATTCTATCACTTTCAGATGAGATGAAGAATATATCCACTAAAATTGTCCAAGCTCAAGCCATGATGAACATGCAAGAGATTAAAACTTCTTTGAAGGAACAATCAGAAAAAGAACTAGAAGTTATAGAGAAAGATCTATACCCCATTGATATGGACTGGGATACAAACAATACACAATCCCCAGTTGTATCGGAGTTGAGCGAAGGTGTTACAAATACAAATGGAAGAGGAAACCAAATGAAGTATAGCAAGGTTACATCAGCCATGGCAGAACTACCCTCAGTGACCCATTACATAGAACCTCTCTTTGAGACCTTCTTCTGTCCATTGACAAAGAATATCATGGCCGATCCAGTTAGCTTAGAAACGGGAGTGTCATATGAAAGACAAGCAATTGTTGAGTGGCTTAAAGAGTTCGAAGAATCCGAGGAAATTTTCTGCCCAGTCACAGGGCAAAAGCTTGTGTCCAAAGCTTTTAATTCCAACAGAGCTCTGAAGTCTACAATAGACAAATGGAAGGAACGCAATGAGATAGCAACAATCAAAGTCGCCCGGGCTGCTCTGTCTTTAGCCAGTTCAGATGAAATGGTGCTTGAGGCAATCAAAGACCTGTCGAGTATCAGCAAAGGGAAGCAGTTCAACATAGAACGGATCTTCAATTTTGACATGTTACCTTTGCTCGCTAACTTTTTGGAGTACAGAGACAGAGACGTTAGATATGCAGTTCTAGAGCTATTGCATCAAATGGCAGAAATCAATGAAGACAACAAGATAATGATCTGTAACCAATTGGACGTATCAAGAATAATCAATCTATTATCAAGTAGTCACAGTTCCATTCGGGATAGAGCCTTGCTTCTGTTGTTTGAGCTTTCAAGATCCCAGTCATTGTCAGATCCAATTGGTTCAGTAACTGGGGGGATTCCAATGCTGATCATCATGAAGGACAATAGGTCCGATGAATTTGCTTCAGAAAAGGCAGATGAAACCTTGAGAAACTTAGAGAAATCTCCAACGAATATCAAGCATATGGCAGAAGGTGGACTCATGGAACCCCTCATAAGGCATCTTACTGAAGGTAGTGAGTGGATGAGAATAGAAATGGCAAGCTATCTTGGGGAGATTGTCATTAGACATGACTGTATGGCATATGTAGCTGAGAGGGCCTCTTCAGTTCTTGTCAAGATGGTGCACGAGGGAGATACATTCGTCCGCAAGGCAGCATTTAAAGCTCTATTGCAAATTTCATCTCACAGGCCTAATGGTAAAACACTTGCAAAAGCTGGAGCTGTACAAGTCATGGCTGAAGAGATGTTCACTCGTACCATTTGTGATGAACTTAATGATCCAAAAGCAGATGCAACTCAAATACTGGCAAATATATGCGAATCCTGTCTTGATCTTGGGACACTTCAAGTTAACACTCATGGCTACACTATGAGTTCAGATTATGTAGTCTACAACATTATCGACTTGCTCAAGAACTCAACTCCAGATGAATCTAAATTTAGCACGAGTCTCATCAGCATACTATTATGCTTGACAAAATCTCCAAAACCAATGGACACCCTTGTTTCGGGTGTAAAAAACACTGAAGCATGTGATAACCTCATATATTTCATCAGTAGTCCAGATGAAGAACTTAGAGCTGCAGCAATAAAACTGCTCATATCGCTGTCCCCTTACATGGGCTTCCCAATGGCAGAAAGACTCTGCAAAGCCAGTGACCAAGTGGAGAACCTTACCAGTAGCATTACCTTGACAAACCAAATCACAGAGAAGCAGGCACTTTCAGCAACATTCTTAGCAAAACTACCTCACGAGAGCCTAGCTCTCAACACCATGATTGTAAACAAGAACATCGTGCCCAAGCTCCTGCAAACAATCATTCAAATACAAAGCAGTGGAACAGGAATGAGCAGGTATGCAAGTGCTTTACTAGAAGGTTCGGTGGGAATTCTTGTCAGATTCACAGCAACACTTTATGACCCGCAAATGCTGTTTCTGGCAAAAATTCACAATTTTACATCAGTATTAACTAACCTGCTCACTCAAACATCAAGTGATGAAGTTCAAAAGCTATCCGCCATTGGGTTGGAGAAACTATCATCAGCATCCGCGAGTCTATCCAAGCCCCTGAACATTAAAAGCAACAAGATCATGAAATTTCTCCACTTACCCAAGCTTCTATTGCTAGGTCCATCAAAGAAGGGTTACTTACGAGTATGCCCAGTTCATAAAGGGGCTTGCTCTTCACAAAACACATTCTGTTTAGTCCATGCGAAAGCAATTGAAAAGCTATTGACGTGTTTAGACAATGAGAACGAAGAGGTAGTTGAGGCAGCTTTGTCCGCCATTTGTACGCTTGTGGATGAGAAAGTGGATCTGGACAGAAGTGTGAGCCTGCTGAACGAATTTGACACAATAAGGCATGTCCTGAATGTGGTGAGAATGCATAAGCAAGAATCTGTGTGGCATAAATCATTTTGGTTGATCGAGAAGTTCTTGATCAAGGGTGGGGAAGAGTCACTTTCCAATATATCACAGGACAGATCGTTGCCTGCAATATTGGCTACTGCTTCCCATCAAGGGGACAGCGAGACGAGGCGAATAGCAGAAAAGATATTGACCCATTTGATTATGGTACCAAATTTCTCTGCTCCTAATTATATTCCATGA 3072 41.21 MSRAMTTKPILSLAELILVSISEIVDSTEYTEEEHGKFIEIGSYFYRAALAVVELQGIDPMPFDEILQSLNKSINHAKELVEKFLNGIQLVSDSDPITIINPLEEVIKEMGECLNKIATATFEEQNYVKMAILSLSDEMKNISTKIVQAQAMMNMQEIKTSLKEQSEKELEVIEKDLYPIDMDWDTNNTQSPVVSELSEGVTNTNGRGNQMKYSKVTSAMAELPSVTHYIEPLFETFFCPLTKNIMADPVSLETGVSYERQAIVEWLKEFEESEEIFCPVTGQKLVSKAFNSNRALKSTIDKWKERNEIATIKVARAALSLASSDEMVLEAIKDLSSISKGKQFNIERIFNFDMLPLLANFLEYRDRDVRYAVLELLHQMAEINEDNKIMICNQLDVSRIINLLSSSHSSIRDRALLLLFELSRSQSLSDPIGSVTGGIPMLIIMKDNRSDEFASEKADETLRNLEKSPTNIKHMAEGGLMEPLIRHLTEGSEWMRIEMASYLGEIVIRHDCMAYVAERASSVLVKMVHEGDTFVRKAAFKALLQISSHRPNGKTLAKAGAVQVMAEEMFTRTICDELNDPKADATQILANICESCLDLGTLQVNTHGYTMSSDYVVYNIIDLLKNSTPDESKFSTSLISILLCLTKSPKPMDTLVSGVKNTEACDNLIYFISSPDEELRAAAIKLLISLSPYMGFPMAERLCKASDQVENLTSSITLTNQITEKQALSATFLAKLPHESLALNTMIVNKNIVPKLLQTIIQIQSSGTGMSRYASALLEGSVGILVRFTATLYDPQMLFLAKIHNFTSVLTNLLTQTSSDEVQKLSAIGLEKLSSASASLSKPLNIKSNKIMKFLHLPKLLLLGPSKKGYLRVCPVHKGACSSQNTFCLVHAKAIEKLLTCLDNENEEVVEAALSAICTLVDEKVDLDRSVSLLNEFDTIRHVLNVVRMHKQESVWHKSFWLIEKFLIKGGEESLSNISQDRSLPAILATASHQGDSETRRIAEKILTHLIMVPNFSAPNYIP 1023
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 35272179 35277782 - ClCG05G023450.1 Cla05g02371 273861

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g02371 1023 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 42-RELATED 10 1021 - -
Cla05g02371 1023 CDD RING-Ubox_PUB 237 283 IPR045210 -
Cla05g02371 1023 Gene3D - 511 691 IPR011989 -
Cla05g02371 1023 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 10 1021 - -
Cla05g02371 1023 SUPERFAMILY ARM repeat 317 643 IPR016024 -
Cla05g02371 1023 Gene3D - 794 1020 IPR011989 -
Cla05g02371 1023 SUPERFAMILY ARM repeat 524 1010 IPR016024 -
Cla05g02371 1023 SMART arm_5 794 835 IPR000225 GO:0005515
Cla05g02371 1023 SMART arm_5 468 508 IPR000225 GO:0005515
Cla05g02371 1023 SMART arm_5 342 382 IPR000225 GO:0005515
Cla05g02371 1023 SMART arm_5 882 922 IPR000225 GO:0005515
Cla05g02371 1023 SMART arm_5 384 424 IPR000225 GO:0005515
Cla05g02371 1023 Pfam Armadillo/beta-catenin-like repeat 882 920 IPR000225 GO:0005515
Cla05g02371 1023 ProSiteProfiles HEAT repeat profile. 354 390 IPR021133 -
Cla05g02371 1023 Pfam U-box domain 235 308 IPR003613 GO:0004842|GO:0016567
Cla05g02371 1023 Gene3D - 317 510 IPR011989 -
Cla05g02371 1023 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 221 316 IPR013083 -
Cla05g02371 1023 SMART Ubox_2 236 303 IPR003613 GO:0004842|GO:0016567
Cla05g02371 1023 SUPERFAMILY RING/U-box 219 312 - -
Cla05g02371 1023 ProSiteProfiles U-box domain profile. 232 310 IPR003613 GO:0004842|GO:0016567
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g02371 - - - csv:101217719 1576.99
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g02371 Cla-Chr5:35272179 Cla08g00936 Cla-Chr8:21887805 3.72E-125 dispersed
Cla05g02371 Cla-Chr5:35272179 Cla03g00152 Cla-Chr3:1576062 2.91E-18 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1007 . Blo16g01073 . Bda11g01163 Bpe13g01362 . . . . Cmo18g01102 . Cma18g01080 . Car18g01002 Sed08g1853 Cpe09g00244 . Bhi07g01438 Tan04g0950 Cmetu03g1218 Lac13g0414 Hepe10g1828 . . Cla05g02371 Cam05g2539 Cec05g2569 Cco05g2608 Clacu05g2536 Cmu05g2395 Cre05g2512 . . . . Lsi04g00332 Csa05g02538 Chy10g01080 . . . . Bda11g01163 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012245 1 1 1 0 1 1 1 1 1 1 1 1 1 1 2 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 29