Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g02372 ATGTGGAGAAACATTGTCAAAAGAGTTGCTTCAGGGAAAGCTACATTATTCTCCGAGTTGTCTTCTTCTAGCTCAAGAAAAGTTATTGAAGACCATATCTTTCTCGATCAAATTAGATCTTCCGGGACGCTCGAAAGCTTGAATACTTGTTGCCAATTAGCGGGCTCTCGTAGAATCAGCTTTTTCCATCCCCACAAAGTTGGATTTACGAACTCCAATTTCCCACATTCAAGCAACACCGTAGCTTTTTCTGGGGTTCAAAACCATGCCAAAGGCTACGCTACTGCTGCTGAGGCAGCCATATCCGAGGAAGATTTATCGGGCTCCGAAGAAATTCAGGAATTGATGGAGGAGCTAAGCAAACAAGATAAGCTGGAGCCTCACTTTAAGCAGCCTAAGAAAATGGTCGATGGCATGGGGGTAACTAAGTACAATATGCTACGGAAGAGACAGATAAAGATGGAGACGGAGGCATGGGAAGAGGCTGCCAGAGAATACCAAGAACTTTTAACAGATATGTGTGAGCAGAAGCTGGCGCCCAATTTACCTTACATGAAGTCTTTATTCCTTGGTTGGTTCGAACCTTTGCGTGATGCGATTGCTGCGGACCAAGAATTTTGCAAGGATAAGAAGAGTCGAGTGTCTCATGCTCCTTATTTTGATCTTCTACCGGCTGATATGATGGCAGTGATTACAATGCATAAGTTAATGGGGTTGCTGATGAGTAGCACTGGAGGCAATGGTAGTGTCAGGGTAGTCCAAGCTGCCTGTCAGATAGGAGAAGCAATTGAACACGAGGTTAGAATATGCAGTTTCTTTGAGAAGACAAAGAAGAACAGTAATGGAAAAAATATTGAAGAAGAAACTGAGCCTGTAGCCGAACAACAGGAGAAACTAGCCAAAGATCAAGACAGATTGAGGAAAAAAGTCACCAAACTGATGAAACAACAGAAGTTGCAGCAAGTGAAGATGATAGTTAAGGCGCATGATGATTTAAAGCCTTGGGGCCAGGATGTTCATGTGAAGGTAGGTTGCCGTTTGATTCAGTTGTTGATGGAAACAGCTTATATTCAACCTCCAGTTGATCAGTTAGGAGATGGTCCACCTGATATTCGCCCCGCATTTGTCCATACTCTTAAAACCATCACAAAAGAAGCACAGAAGACTAGCAGGAGATATGGTGTTATTGAATGTGATCCACTTGTTCGCAGAGGGCTGGAGAAAACTGCTAGACACATGGTCATTCCGTATATGCCTATGGTGGTGCCTCCTCTTAATTGGACAGGGTATGACAAAGGGGCATACTTATTCCTTCCATCATATGTAATGCGAATACACGGGGCAAAACAGCAACGTGAAGCAGTTAAAAGGACTCCAAAGAAGCAACTAGAGCCTGTTTTCGAGGCTCTCGATACACTTGGAAGAACCAAATGGAGGGTGAACAAAAGAGTTCTTAGCATTATCGAGAGGATATGGGCTAGTGGTGGTCGTCTTGCTGACTTGGTTGACCATGAAGATGTTCCTCTGCCGGAGGAGCCAAGTGGGGAAGATGAAGCAGAAATTCGAAAATGGAAGTGGAAAGTTAAGGCTGTGAAAAAGGAGAATAGTGAAAGGCATTCACAGCGGTGTGACATAGAGCTTAAGCTTGCGGTGGCCAGGAAAATGAAAGGGGAGGATGGCTTCTACTATCCACACAACCTAGATTTTCGAGGTCGTGCATACCCCATGCATCCATATTTGAATCATCTTGGTTCTGATTTGTGTCGAGGAATTCTAGAATTTGCAGAGGGAAGACCTCTTGGAGAGTCAGGGTTACGTTGGTTAAAGATACATTTAGCAAATCTGTATGCTGGTGGTGTGGATAAGTTATCTTATAAGGATAGAGTATCATTTACCGAGAACCATTTGGATGAGATTTTTGATTCTGCAGACAGGCCTCTCGAAGGAAACCAGTGGTGGTTGGGTGCGGAGGATCCTTTTCAGTGCTTGGCAGTGTGTATTAATCTGTCAGAGGCTTTAAGAAGTCCCTCGCCGGAAACTACTATTTCCCATATGCCTGTACATCAGGATGGTTCCTGCAATGGCTTGCAACACTATGCAGCTCTTGGGAGGGATAAGTTGGGAGCAGCAGCAGTTAACCTTGTAGCAGGTGACAAGCCCGCAGATGTCTACTCAGGAATTGCGTCCAGAGTTCTTGACATAATGCGAAGTGATGCAGAGAAAGATCCTGCAAGTAATCCACATGCGTTGCATGCTAGACTCTTAATCAATCAGGTGGATCGTAAACTGGTGAAGCAAACAGTCATGACATCAGTTTATGGTGTTACTTATGTCGGTGCTCGAGATCAGATTAAAAGAAGGTTGAAAGAACGAGCATCCATTGCTGATGATTCAGAATTATTTGCGGCTTCTTGCTATGCAGCTAAAACTACCTTGATTGCTTTGGGGGAAATGTTTGAAGCAGCAAGAAGTATCATGAGCTGGCTTGGTGAATGTGCAAAGGTAATAGCTTCAGAAAATCAGCCAGTTCGATGGACAACTCCTCTTGGACTGCCGGTGGTGCAACCTTACCGGCAACTAGGAAGGCATCTTATCAAGACTTCCTTGCAAGTGTTGACTCTACAACGAGAAACTGACAAGGTCATGGCTAAGCGTCAGAGAACAGCATTTCCTCCAAATTTTGTACACTCGCTTGATGGTTCTCATATGATGATGACTGCTGTCGCCTGCAAAAGGGCAGGCCTAAACTTTGCAGGAGTCCACGATTCATATTGGACCCATGCATGTGATGTCGATGAAATGAACAGAATACTTAGGGAGAAGTTTGTTGAGCTATACGAGGCCCCTATTCTGGAGAATTTACTGGAAAACTTCCAAAAGTCCTTCCCCAAGTTAACGTTTCCTCCCTTACCTGATCGGGGAGACTTTGATCTCAAAGATGTTCTGCAAATGCTTCAGTTGGATGCTCTTTCTCATATGTGCTACGTTGGTGGCGAACATCAGACCTATGCAACGGTAGTAATCCTTGATTCATTGAAATCGGTCTCTGAGGGCAACATGCTTGGGGTCAAGCTGGTCAAGGGCAGTGCTGTCCTGATACTTGTACATATACTTCAGATTTTGGGATTCAGAAATACCGAAAGACATGGCTTTCAAAGTGATAGACAAAGGAAGAACTCGGTGCAATCTTGTTAA 3195 44.26 MWRNIVKRVASGKATLFSELSSSSSRKVIEDHIFLDQIRSSGTLESLNTCCQLAGSRRISFFHPHKVGFTNSNFPHSSNTVAFSGVQNHAKGYATAAEAAISEEDLSGSEEIQELMEELSKQDKLEPHFKQPKKMVDGMGVTKYNMLRKRQIKMETEAWEEAAREYQELLTDMCEQKLAPNLPYMKSLFLGWFEPLRDAIAADQEFCKDKKSRVSHAPYFDLLPADMMAVITMHKLMGLLMSSTGGNGSVRVVQAACQIGEAIEHEVRICSFFEKTKKNSNGKNIEEETEPVAEQQEKLAKDQDRLRKKVTKLMKQQKLQQVKMIVKAHDDLKPWGQDVHVKVGCRLIQLLMETAYIQPPVDQLGDGPPDIRPAFVHTLKTITKEAQKTSRRYGVIECDPLVRRGLEKTARHMVIPYMPMVVPPLNWTGYDKGAYLFLPSYVMRIHGAKQQREAVKRTPKKQLEPVFEALDTLGRTKWRVNKRVLSIIERIWASGGRLADLVDHEDVPLPEEPSGEDEAEIRKWKWKVKAVKKENSERHSQRCDIELKLAVARKMKGEDGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRPLGESGLRWLKIHLANLYAGGVDKLSYKDRVSFTENHLDEIFDSADRPLEGNQWWLGAEDPFQCLAVCINLSEALRSPSPETTISHMPVHQDGSCNGLQHYAALGRDKLGAAAVNLVAGDKPADVYSGIASRVLDIMRSDAEKDPASNPHALHARLLINQVDRKLVKQTVMTSVYGVTYVGARDQIKRRLKERASIADDSELFAASCYAAKTTLIALGEMFEAARSIMSWLGECAKVIASENQPVRWTTPLGLPVVQPYRQLGRHLIKTSLQVLTLQRETDKVMAKRQRTAFPPNFVHSLDGSHMMMTAVACKRAGLNFAGVHDSYWTHACDVDEMNRILREKFVELYEAPILENLLENFQKSFPKLTFPPLPDRGDFDLKDVLQMLQLDALSHMCYVGGEHQTYATVVILDSLKSVSEGNMLGVKLVKGSAVLILVHILQILGFRNTERHGFQSDRQRKNSVQSC 1064
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 35278644 35287741 - ClCG05G023460.1 Cla05g02372 273862

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g02372 1064 SMART RPOL_N_2 149 475 IPR029262 -
Cla05g02372 1064 Gene3D - 598 676 - -
Cla05g02372 1064 Pfam DNA-dependent RNA polymerase 598 983 IPR002092 GO:0003677|GO:0003899|GO:0006351
Cla05g02372 1064 Gene3D - 128 474 IPR037159 -
Cla05g02372 1064 Gene3D - 707 896 - -
Cla05g02372 1064 ProSitePatterns Bacteriophage-type RNA polymerase family active site signature 2. 759 773 IPR002092 GO:0003677|GO:0003899|GO:0006351
Cla05g02372 1064 Gene3D - 476 557 IPR024075 GO:0003899
Cla05g02372 1064 MobiDBLite consensus disorder prediction 280 304 - -
Cla05g02372 1064 ProSitePatterns Bacteriophage-type RNA polymerase family active site signature 1. 686 697 IPR002092 GO:0003677|GO:0003899|GO:0006351
Cla05g02372 1064 Pfam DNA-directed RNA polymerase N-terminal 150 475 IPR029262 -
Cla05g02372 1064 PANTHER DNA-DIRECTED RNA POLYMERASE 1 983 - -
Cla05g02372 1064 Coils Coil 149 169 - -
Cla05g02372 1064 PANTHER DNA-DIRECTED RNA POLYMERASE, MITOCHONDRIAL 1 983 IPR002092 GO:0003677|GO:0003899|GO:0006351
Cla05g02372 1064 SUPERFAMILY DNA/RNA polymerases 135 983 IPR043502 -
Cla05g02372 1064 Coils Coil 296 316 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g02372 K10908 POLRMT, RPO41; DNA-directed RNA polymerase, mitochondrial [EC:2.7.7.6] - csv:101217958 1582.77
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g01415 Cla-Chr2:28656604 Cla05g02372 Cla-Chr5:35278644 0 transposed
Cla11g00472 Cla-Chr11:5392636 Cla05g02372 Cla-Chr5:35278644 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1006 . . . . . . . . . Cmo18g01103 . Cma18g01081 . . Sed06g1812 Cpe09g00242 . Bhi07g01439 Tan04g0951 Cmetu04g2545 Lac13g0412 Hepe10g1827 . . Cla05g02372 Cam05g2540 Cec05g2571 Cco05g2609 Clacu05g2538 Cmu05g2397 Cre05g2514 . . . . Lsi04g00334 Csa05g02536 Chy10g01079 Cme10g00332 . . . . . . . . . . . . . . Car15g00220 Cpe13g00995 . . . . . . . . . . . . . . . . . Chy09g00175 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000643 2 4 3 3 2 3 3 3 3 3 3 3 4 3 4 5 3 4 5 3 3 3 3 5 4 3 3 3 4 3 100