Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g02374 TGTTTCCATATGTTTCATCCTCCACTCTACATTCAATACACTGATAAAAAAAAGAAGAAACTAAACTCTAGCTCCATCTTCTTCTTCCTCCCCCTAGCCGCCGACACCCCTTCCTTCAGTCTTCTTCGCCGGCGACCTCACCCACGAGCAGCAGCGTCCACACAGACGCCGACGACCAGTCCTCGCGCATCAGACGATTCAGACCGACGTGCTTTTGCTCCACGTTCGACGGCGGAGCTAGCCTGCGACGTGAACACCCACTTCGAACAAGTTCCGAAGATCCTCGCTTCTTTTAGTTCTGTGATCCTTGCTAGGCCTTCAGTTTCTGCCGCTCGGCTTGAAGCGGAATCCGTCACTACCTCCTTCGTTCTGGACCAGAATGACCCAGTTTGTGAAATTCTTACGGGTTTAAATTCCTTTGGGTTTAGAGCGTATGTTGGTGGATGTAACTTTCGAACTGTTGTTTCTACTTTGAGCGAAACTGTAGTGGATGAGGTTCTTGATAGCTTGAGAACTCAGAATCCTGATGTTGCTGTGGCTTTTTTCTATTTGTTAAGAAATGAGTACGGATTTCGGCATTCCAGATTCTCCCAGTTTGCTGTTTCTCATATTTTAGCGGGTAAAGGACGATTCAAGGAGTTGCATTCCGTTATAAAGCAATTGCTTGAGGAGCAAGGGTCTGGTTCTGCATCTACATGTTGTGACCTGCTCTTGAACAAATTCAGGAATTGGGATTCAAATAGTGTGGTATGGGATACGCTGGCATTTGTATACTCTAGACATGAAATGATCCATGATGCCCTCTTCGTCATTGCAAAGATGAAGGATCTAAATTTACAAGCTTCAGTTCCAACTTATAACTCTCTATTGCATAACTTGAGGCACACTGATATTATGTGGAATCTATACAGTGAGATAAAAGTTAGAGCTCCCCATAGTGAATATACTAACTCAATACTTATGCACGGCCTATGTGAGCAATCCAAGTTACAAGATGCAATTTCATTCCTACAGGACAGCAATGAAGTAGTTGGACCTTCTATTGTGTCTATCAATACCATAATGTCAAAGTTTTGCAAAGTGGGGCTAATAGATGTTGCGAGGTCATTTTTTTGTTTGATGGTAAAAAATGGACTGCTTCCTGATTCCTACAGTTATAATATTCTTGTTCATGGGTTATGTGTAGCAGGTTCCATGGACGAAGCTCTGGAATTCACAGATGACATGGAAAAGCATGGTGTGGAACCTGATGTAGTAACATACAACACACTCGCCAAAGGATTTCTCCTGCTTGGTTTGATGAGTGGGGCCCAGAAAGTTGTCCAGAAAATGTTGCTGAAAGGTCTAAATCCGGATCTTGTGACATATACAATACTGATGTGTGGACATTGTCAAATGGGAAATATTGAGGAAGCTCTTAAACTGCGGCAAGAAACTCTTTCAAGGGGGTTTAAGTTGAATATCATTTCCTACAGCGTGCTACTTAGCTGTTTGTGTAAAGTTGGACGTATAGAAGAAGCATTGACATTGCTTGATGAAATGGAAACTTTACGTTTAAAACCTGATTTTATAGTATATTCAATCCTCATTCATGGCCTCTGCAAGGAAGGGTTTGTGCAAAGGGCTTACCAACTATATGAACAAATGTGCTTGAAGAGAATTTTTCCAAACTACTTTGCTCAACGTGCTGTACTGTTAGGTCTATTTGAGAATGGAAATATATCTGAGGCAAGAAAGTATTTTGATGCTTTGACTCACATGGATCTGATAGAGGATGTTATTTTGTATAATATTATGATTGATGGTTACGTAAGACTTGGTGATATTGCTGAGGCTATGCAGCTATATTGCAGAATGATTGAAAGGGGGATCACTCCAAGTGTTGTCACTTTCAACACTCTTATCAAAGGATTCTGCAGAATGGGAGACCTAGTGGAGGCTCGAAAGATGTTGGAAGTTATTAGGTCGAATGGATTGCTACCTAGTGTGGTAACTTATACTACCCTAATGAATGCGTACTGTGAAGTGGGAAACATGCAGGAAATGTTTCATCTTCTTCATGAGATGGAGGCAAACGCTGTTGTTCCAACTCATGTAACTCATACTGTACTAATCAAAGGACTTTGCAGACAGAATAAGATGCATGAGGCCCTCCAGTTGCTTGAGTATATGTATGCAAAGGGTCTAATGCCAGATCCGGTCACATATAATACAATTATCCAATGTTTATGCAAGGAAAGAGACATTGACAAAGCTTTCCAGCTTTATAATAAGATGTTGCTCCATAATCTTGATCCTACCCATGTAACTTATAACGTACTTATTAATGGTCTTTGTATATATGGTGACCTAAAGGATGCTGATCGAATGCTAGTTTCTATGGAGGATCGAAATATAAGCTTGACAAAAGTTGCTTATATGACAATAATTAAAGCACATTGTGCAAAGGGTCAGGTCTCTAAAGCGTTAGGGTTCTTCAATCAAATGTTGGCTAAGAGTTTTGTTATTTCCATTAGAGATTATAGCGCTATCATTAATCGGCTGTGCAAAAGGGGTCTAATTACTGAAGCGAAGTACTTCTTTGTTATGATGTTATCAGAAGGCATAACTCCTGATTCTGAAATTTGTGAGACAATGCTTAATGTTTTCCATCAACAGGGCGACAACAGTTTAGTGTTAGAATTCCTTGCTATGGTGGTTAAATCTGGCTTTATTTCACATCGATCCATTCCTTGCTATGGTGGTTGA 2748 40.65 CFHMFHPPLYIQYTDKKKKKLNSSSIFFFLPLAADTPSFSLLRRRPHPRAAASTQTPTTSPRASDDSDRRAFAPRSTAELACDVNTHFEQVPKILASFSSVILARPSVSAARLEAESVTTSFVLDQNDPVCEILTGLNSFGFRAYVGGCNFRTVVSTLSETVVDEVLDSLRTQNPDVAVAFFYLLRNEYGFRHSRFSQFAVSHILAGKGRFKELHSVIKQLLEEQGSGSASTCCDLLLNKFRNWDSNSVVWDTLAFVYSRHEMIHDALFVIAKMKDLNLQASVPTYNSLLHNLRHTDIMWNLYSEIKVRAPHSEYTNSILMHGLCEQSKLQDAISFLQDSNEVVGPSIVSINTIMSKFCKVGLIDVARSFFCLMVKNGLLPDSYSYNILVHGLCVAGSMDEALEFTDDMEKHGVEPDVVTYNTLAKGFLLLGLMSGAQKVVQKMLLKGLNPDLVTYTILMCGHCQMGNIEEALKLRQETLSRGFKLNIISYSVLLSCLCKVGRIEEALTLLDEMETLRLKPDFIVYSILIHGLCKEGFVQRAYQLYEQMCLKRIFPNYFAQRAVLLGLFENGNISEARKYFDALTHMDLIEDVILYNIMIDGYVRLGDIAEAMQLYCRMIERGITPSVVTFNTLIKGFCRMGDLVEARKMLEVIRSNGLLPSVVTYTTLMNAYCEVGNMQEMFHLLHEMEANAVVPTHVTHTVLIKGLCRQNKMHEALQLLEYMYAKGLMPDPVTYNTIIQCLCKERDIDKAFQLYNKMLLHNLDPTHVTYNVLINGLCIYGDLKDADRMLVSMEDRNISLTKVAYMTIIKAHCAKGQVSKALGFFNQMLAKSFVISIRDYSAIINRLCKRGLITEAKYFFVMMLSEGITPDSEICETMLNVFHQQGDNSLVLEFLAMVVKSGFISHRSIPCYGG 915
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 35304103 35311649 - ClCG05G023480.1 Cla05g02374 273864

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g02374 915 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 592 626 IPR002885 -
Cla05g02374 915 Gene3D Tetratricopeptide repeat domain 410 475 IPR011990 GO:0005515
Cla05g02374 915 Gene3D Tetratricopeptide repeat domain 338 409 IPR011990 GO:0005515
Cla05g02374 915 Gene3D Tetratricopeptide repeat domain 588 654 IPR011990 GO:0005515
Cla05g02374 915 Gene3D Tetratricopeptide repeat domain 149 308 IPR011990 GO:0005515
Cla05g02374 915 Gene3D Tetratricopeptide repeat domain 725 795 IPR011990 GO:0005515
Cla05g02374 915 Gene3D Tetratricopeptide repeat domain 655 724 IPR011990 GO:0005515
Cla05g02374 915 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 347 381 IPR002885 -
Cla05g02374 915 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 662 696 IPR002885 -
Cla05g02374 915 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 732 766 IPR002885 -
Cla05g02374 915 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN 92 905 - -
Cla05g02374 915 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 487 521 IPR002885 -
Cla05g02374 915 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 802 836 IPR002885 -
Cla05g02374 915 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 837 871 IPR002885 -
Cla05g02374 915 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 767 801 IPR002885 -
Cla05g02374 915 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN PET309, MITOCHONDRIAL 92 905 - -
Cla05g02374 915 SUPERFAMILY HCP-like 438 652 - -
Cla05g02374 915 Pfam PPR repeat 447 477 IPR002885 -
Cla05g02374 915 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 452 486 IPR002885 -
Cla05g02374 915 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 417 451 IPR002885 -
Cla05g02374 915 Gene3D Tetratricopeptide repeat domain 476 587 IPR011990 GO:0005515
Cla05g02374 915 Pfam PPR repeat family 731 779 IPR002885 -
Cla05g02374 915 Pfam PPR repeat family 592 640 IPR002885 -
Cla05g02374 915 Pfam PPR repeat family 487 535 IPR002885 -
Cla05g02374 915 Pfam PPR repeat family 346 394 IPR002885 -
Cla05g02374 915 Pfam PPR repeat family 661 710 IPR002885 -
Cla05g02374 915 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 697 731 IPR002885 -
Cla05g02374 915 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 627 661 IPR002885 -
Cla05g02374 915 Gene3D Tetratricopeptide repeat domain 796 910 IPR011990 GO:0005515
Cla05g02374 915 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 522 556 IPR002885 -
Cla05g02374 915 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 382 416 IPR002885 -
Cla05g02374 915 Pfam PPR repeat 841 869 IPR002885 -
Cla05g02374 915 Pfam PPR repeat 804 832 IPR002885 -
Cla05g02374 915 TIGRFAM PPR: pentatricopeptide repeat domain 664 697 IPR002885 -
Cla05g02374 915 TIGRFAM PPR: pentatricopeptide repeat domain 489 522 IPR002885 -
Cla05g02374 915 TIGRFAM PPR: pentatricopeptide repeat domain 629 662 IPR002885 -
Cla05g02374 915 TIGRFAM PPR: pentatricopeptide repeat domain 734 767 IPR002885 -
Cla05g02374 915 TIGRFAM PPR: pentatricopeptide repeat domain 804 837 IPR002885 -
Cla05g02374 915 TIGRFAM PPR: pentatricopeptide repeat domain 699 732 IPR002885 -
Cla05g02374 915 TIGRFAM PPR: pentatricopeptide repeat domain 841 873 IPR002885 -
Cla05g02374 915 TIGRFAM PPR: pentatricopeptide repeat domain 769 801 IPR002885 -
Cla05g02374 915 TIGRFAM PPR: pentatricopeptide repeat domain 454 487 IPR002885 -
Cla05g02374 915 TIGRFAM PPR: pentatricopeptide repeat domain 524 557 IPR002885 -
Cla05g02374 915 TIGRFAM PPR: pentatricopeptide repeat domain 349 383 IPR002885 -
Cla05g02374 915 TIGRFAM PPR: pentatricopeptide repeat domain 595 627 IPR002885 -
Cla05g02374 915 TIGRFAM PPR: pentatricopeptide repeat domain 384 418 IPR002885 -
Cla05g02374 915 MobiDBLite consensus disorder prediction 47 69 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g02374 - - - bhj:120081514 1480.31
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g02374 Cla-Chr5:35304103 Cla03g01216 Cla-Chr3:25949654 1.58E-61 dispersed
Cla05g02374 Cla-Chr5:35304103 Cla02g01383 Cla-Chr2:28248026 2.65E-23 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1000 . . . . . . . . Cmo04g01645 . . . Car04g01622 . Sed07g2016 . Cpe01g01394 Bhi07g01446 Tan04g0955 Cmetu04g0673 . . . . Cla05g02374 Cam05g2544 Cec05g2576 Cco05g2615 Clacu05g2543 Cmu05g2402 Cre05g2519 . . . . Lsi04g00341 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009359 0 2 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 3 2 2 32