Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g02387 ATGGCTCTATGTGGGGATCATAAAGATAGAGAGGTGAGGATCCATGAAAGTTTGGAGGAGCTAAGTACTGATTTAGCTGACTATATTGCTGAATTATCAGAGGCATCTGTGAAAGAACGTGGGGTATTTTCTATTGCGTTATCTGGTGGTTCTCTGATTAGCTTAATGGGAAAGCTCTGTGAAGCTCCTTACAACAAGACTGTCGACTGGGCCAAGTGGTATATATTTTGGGCTGATGAACGTGTTGTTGCAAAAAGCCATGCGGACAGCAATTATAAGCTTGCAAAGGATAACCTTCTTTCCAAGGTGCCAATTGTTCCCAGCCATGTACACTCGATCAATGATTCGGTGTCAGCTGAGGAAGCTGCTGATGAGTACAAGTTCGTCCTTCGACAGTTAGTTAAATCCCGCATCGTAAGTGTGTCTGATGTGAGTGACAGTCCCAAGTTTGACCTCATACTACTTGGAATGGGTTCTGATGGCCATGTCGCCTCATTATTCCCCAACCACTCTGTGGTCGAGGAGAAAGATGAATGGGTTGCCTTCATAACCGATTCTCCGAAACCTCCTCCAGAGAGAATCACCTTCACATTGCCTGTGATCAACTCTGCATCAAATGTGGCGATTGTTGTGACAGGCAAAAACAAAGCAGAGGCTGTACATTTGGCCATCGATGATGGAGGAGCAGACTGCCCACTCCTACCTGCGAGGCTTGAGGCATTTGCTTGGCCTTGGAAATGGAAACCCAAATCCAGTTTCCGATTACATTTGCCTCGTGAGAGAAGATTCCCTTCAATGTTTCATCATTTCATTAATATGAAAATTGCATCGCATTCAACGAGTTGTAGGCCTCTGCTCCATCATTTCATCGCGCAGAAGATGTCGCCATTTGAGTTGTCGATGACGTTCCCTTACGATGTCTGA 924 45.35 MALCGDHKDREVRIHESLEELSTDLADYIAELSEASVKERGVFSIALSGGSLISLMGKLCEAPYNKTVDWAKWYIFWADERVVAKSHADSNYKLAKDNLLSKVPIVPSHVHSINDSVSAEEAADEYKFVLRQLVKSRIVSVSDVSDSPKFDLILLGMGSDGHVASLFPNHSVVEEKDEWVAFITDSPKPPPERITFTLPVINSASNVAIVVTGKNKAEAVHLAIDDGGADCPLLPARLEAFAWPWKWKPKSSFRLHLPRERRFPSMFHHFINMKIASHSTSCRPLLHHFIAQKMSPFELSMTFPYDV 307
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 35419729 35424315 - ClCG05G023630.2 Cla05g02387 273877
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g02387 307 CDD 6PGL 19 238 IPR005900 GO:0005975|GO:0006098|GO:0017057
Cla05g02387 307 PANTHER 6-PHOSPHOGLUCONOLACTONASE 1-RELATED 1 238 - -
Cla05g02387 307 Pfam Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase 18 233 IPR006148 GO:0005975
Cla05g02387 307 SUPERFAMILY NagB/RpiA/CoA transferase-like 11 236 IPR037171 -
Cla05g02387 307 Coils Coil 18 38 - -
Cla05g02387 307 TIGRFAM pgl: 6-phosphogluconolactonase 14 231 IPR005900 GO:0005975|GO:0006098|GO:0017057
Cla05g02387 307 Gene3D - 7 242 - -
Cla05g02387 307 PANTHER 6-PHOSPHOGLUCONOLACTONASE 1 238 IPR039104 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g00020 Cla-Chr1:141066 Cla05g02387 Cla-Chr5:35419729 4.81E-12 dispersed
Cla01g00021 Cla-Chr1:144544 Cla05g02387 Cla-Chr5:35419729 3.71E-86 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g02387 K01057 - csv:101210739 433.721