Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g02388 AACCGTCGACAACCCGCGAAATATCCATTCTGCGAGCTTCCATCGATCAACCGACGAGGCAAAACAATGCGTGGCAACAGGATTGCTCATACTTTGCTCCATCGAGCTCGAATCGCCTCCGTTTCCTCTTCACTCTCCTCCGTCGGAGCACCGTCTTCCATAGTCTGTGGCTCCGAAGCAACGTCTCTAAGTGCTTCCGTCGGAGCACCGTCTTCCATAGTCTGTGGCTCCGAAGCAACGTCTCTAAGTGCTTGCTCCTCTTCCTCCCGTCGCGACTACGCATTCGCCTTTTCCCCCGCTGCAACCCTGCGGTTATTCAATACCAACTCGTCTAAAGACTTTCAAGATGAAGTGAAAGAACATAATCCACCCCAGTGTACGGATGCGTTTTCTTATTCTTATGCAATCCGTCAATTCTCTTATTTTGACGCTTCAATCGAGATTACCGTTTATGGGAGGGATGAACGGGGAGAAACCACGGATGGATGGGAAGAAGACAATGATCTGGAACCTGAGCTTGGTGATGGAGGGGGTGGTGGCGGTGTTGTTTTGCAAGGCGTACCATGGGGTGAGCATGTTCTTTTTCTTGCTCAAGAGGTCCTGCGGCAATTTGGTGATGACATAAAACTCTATTCTTTCAAGACCACTCCACGTGGATACATTTACGTCAGATTAGACAAACTCTCAAACGAATTTGGTTGTCCCGGCTTGGAGGAGCTTGAAAGTTATAGCCAAGAGTACAAGAAAAGATTAGATGAAACTGGAGCACTTGGAAATATTCCCGATGATTTAGCTTTTGAGGTATCATCTCCAGGTGCAGAGAGGTTACTGAAGGTCCCAGATGATCTGTTTAGATTCAAAGCCATGCCAATGCGAGTTTCCTACATTGAAGACGTAGACTTGAGAGGCACTGAAAATGATGGAGTTTTTATGCTGGATCATGTAGAATTGGAATCTAAGAGCTGTATTTGGAAATTGGCAAATGTGAGGGAAAACCGAGATCCTTTAAGTAAGGGTAGGCCTTTGACTCGTAAGCAGAAAGAATGGAGGTTAAAGTTACCCTATGCAAATCATAAGAAGGTATTCCTTTACATTGAATGCTGA 1104 46.11 NRRQPAKYPFCELPSINRRGKTMRGNRIAHTLLHRARIASVSSSLSSVGAPSSIVCGSEATSLSASVGAPSSIVCGSEATSLSACSSSSRRDYAFAFSPAATLRLFNTNSSKDFQDEVKEHNPPQCTDAFSYSYAIRQFSYFDASIEITVYGRDERGETTDGWEEDNDLEPELGDGGGGGGVVLQGVPWGEHVLFLAQEVLRQFGDDIKLYSFKTTPRGYIYVRLDKLSNEFGCPGLEELESYSQEYKKRLDETGALGNIPDDLAFEVSSPGAERLLKVPDDLFRFKAMPMRVSYIEDVDLRGTENDGVFMLDHVELESKSCIWKLANVRENRDPLSKGRPLTRKQKEWRLKLPYANHKKVFLYIEC 367
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 35432356 35437337 - ClCG05G023640.1 Cla05g02388 273878
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g02388 367 MobiDBLite consensus disorder prediction 156 176 - -
Cla05g02388 367 Hamap Ribosome maturation factor RimP [rimP]. 191 367 IPR003728 GO:0042274
Cla05g02388 367 PANTHER OS01G0594650 PROTEIN 120 366 - -
Cla05g02388 367 PANTHER OSJNBA0006B20.18 PROTEIN 120 366 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g02388 Cla-Chr5:35432356 Cla08g00663 Cla-Chr8:18915243 1.29E-55 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g02388 - - csv:101211568 438.343