Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g02389 ATGGGGAGGAATTCAACGGCTGAGAAAGACCTTCGACAGAACGCTGTCTCTCGCTGTGCGGGGGCGGCGGCAATGTGTGGAATCGCTTTGATCGTTTCTGGCATTCGCCTTGATTTATCATCTCTACATGTAGACGCCAGATCCCCGTTTCCTCATCCAGTTCACGAGCAACTTGAGTTTTCGATAGATGATCTTAAAGCGGCATTACGGAGAAGAGGGCCCGATAGCTTAGGCGGAGTGAAGGTTTTTATTTCTTCAAAATCTTCTAATCCCGGTGAAGAGCAGCAGTTTGAGTGTTTCATTGAGAGGGTTGATGATGGCGTTGCATTCCAGAGTCAAAATGATCAATACGAGATGGAAAATGGCCGGTTCTGTTCTGAAAATGGATGTATTCTCCAATCAGAGAACAGTTGCAGTAGGCCCATCTCTGGTGCGGAGTTTTATTTACTAGGGGCTACGTTGCAGCTTAGAGGGCTTAACCCTATTGTTCAGCCACTGAGGGATGCTTCCCGCAATATTCTTGTTTACAATGGTGAAATATTTGGTGGAATACACGTTGAGTGTCATGAAAACGATGCTGAAACTCTTATGCTAGCTCTTGGGAATTGTTGCGCATGTAATTTTAGTTTAGATATGAACACATGTGGAGGTGAATGTAAGAGAGAAAGAACTGTTGTAGATATTCTTTCAAAGATTCAAGGGCCTTGGTCAATCATCTACTGGCAGGATAGTGCAAAAACTTTGTGGTTTGGTCGGGATGCCTTTGGTAGGAGAAGTCTTCTTGTTCACTGGCCAACAGTGGAGGATTCTCGATTTCTGTTGTCTTCTGTATCACCAGCTTCTTCCACGTTTCACGGCTCAGGGCTTGAAGATGACGATGGTACTTGTGAAGTGAGCTTCTGGGAAGAACTACCATGTGGGATTTACAGCATCTCTTTTGATGCGCTGAGAACTGATGGTTACCTGATTGGTGAAGTCAAAAGCCATGAATGGACCAATGAATCCTTGAAAGAGCTTGTCGAGTGGAAAAGAACTCGTATTGTACCTGAACCTGGAGACATCTCCACTCCATATCACAAGGATCTTTTGTCACAACATCAAAGCCATTCAGCATGTTTACCTAACTTGCAATCAGTATCTGGGAGTATTCAAGCTCCTGTCTCAACTCCTGCAGAGATTCTGCTGGATGCTCTAAGGAAGTCTCTAATCCGGCGGACTTCACTTTATACAATTTTCAAGGGTACAATATCGGCTTCCAGAAAAGCAGAACTTGGTCCAGTGGCCATTCTTTTTTCTGGGGGATTGGATTCTATGATACTAGCAGCATTACTGGATGAATGTCTCGATACCTGCTATGAGATAGATCTTCTTAATGTCAGTTTTGATGGTTGTTCTGCACCTGATCGAATCTCTGCGAAGGCTGGAGTTAAGGAACTGAGTAGAATTGCCCCTCTAAGAAGGCATTATATCATTGAGCTCTATCTTGAGTGGAAGCTGGTTGAGATTGATGCTGACTTGTCAAATTTGACCTCTGAAACCAAGCACGTCATGTCGCTAATAAATCCTGCAAATACATACATGGACCTGAATATTGGAATAGCTTTGTGGCTGGCCTCTGGTGGCAATGGTTGGATTTATGAATCAATTGACAAGGATGAGAAGTTTCATCAACGTGTAAAATACAAGTCTGAGGCCAAGATTCTCCTTGTTGGTTCTGGTGCCGATGAGCAATGTGCTGGCTATGGTAGGCATCGAACAAAATATAGACAAGGGGGCTGGCATCTTTTAAATGAGGAAATGAAGTTGGATATTCAGAGAATCTGGAAGAGAAATCTAGGGAGAGATGACAGATGTATTGCAGATAATGGCAAGGAGGCTAGATTTCCCTTTTTGGATGAAGATGTTATACATACATTGCTAGCATTTCCTCTATGGGAGGTTACCGACCTTGAGAAACCTGCTGGGACCGGTGATAAGAAGATACTAAGGGAGGTTGCGAAACTACTTGGTCTGCATGAAGCAGGAGCTCTACCTAAAAGAGCAATACAGTTTGGCTCGAGGATTGCGAGGGAATCAAACCGCAAGAACTTTGGAAGCAACCGGGCTGCTAATCAGGCCTCAGCAGGAAGTGTGAAGTTCAACAGGCAATCCGTTCTTCAACCTCCCCCCTTCAACATCTCTCTGTTTCGCCAATCAGCGCCGTTTTGCACACCATACGCCGCCGGCCACCTTTCCGCCTCCCCTACCGCTTCCCTCCGTCGACCGCCGCAGTCTCGTCGCGCGTCCGTTCGCCGGTCGCCGGCAAGTTCTAGGAGTGGTAATTGTGGAAATGGTAGCGAGGACCAGTGGAGAGCTGAGGAAGCGATTGCTGGAAACTCCGAGGCCCTTAAAACATTGAGAGAGCTGATCGTCTTCCCGCTACTATTCTCCCAGGAAGCTCAAAAAATCGGTCTAAGATGGCCTCGAGGCTTGCTTTTATACGGTCCCCCTGGCACTGGCAAGACAAGTTTAGTACGTGCAATTGTTCAGGAATGCGGTGCACATTTAACCACTATCAGTCCCCATTCAGTTCACAGAGCACATGCTGGAGAAAGTGAAAAAGTTTTGCGTGAGGCCTTCTCCAAAGCATCATCTCATGCAATATCCGGAAAACCATCAGTTATCTTTATAGATGAAATTGATGCACTTTGTCCTCATCGGGATTCTAGGAGAGAGCAAAATGTTCGTATAACCACTCAACTTTCTATACTGATGGACTCCAATAAGCAATCAACATCTGGTAGACCACAAGTTGTCGTAGTTGCATCAACTAACAGGTCAGGGCGTTTTGATGCTGAAATAGAAGTAACAGCACCAACTGAGAATGAACGATATCAAATTCTTAGGCTGTACACAAGGAAGGTTCAATTGGATCCAGAAGTTGATTTACGAGCCATAGCTGCATCATGCAATGGGTTTGTAGGAGCTGACTTGGAGGCTCTGTGTCGTGAGGCTGCAATGGCTGCATTGCAAAGTGGTGCAGAGATGTACTCTATGTATGTTGGCGAGGGAGAGGCTCTACTGCGCAACACTTTTAGAAGAGCTCGTCTCGCTGCACCAAGCATAATATTTTTTGATGAGGCCGATGTTGTTGCTGCCAAAAGAGGTGGGAGTTCAAGTGGTAACACCGCTGTAGGAGAGAGGCTTCTATCTACATTGTTAACTGAGATGGATGGTCTTGAAGAAGCAAAAGGAATACTGGTTTTAGCTGCTACAAATCGTCCTCATGCCATTGATGCTGCGCTTATGAGACCAGGACGCTTTGACTTGGTGCTCTATGTACCTCCACCAGATTTAGAAGCTCGGTATGAGATACTTCGCGTTCATACTCGTCCAATGAAAATTGGAAGTGATGTCGACCTCAAAAAGATCGCAGAGGATACGGAGCTGTTCACTGGGGCCGAACTCGAAGGCCTATGTAGGGAAGCTGGAATTGTAGCTTTAAGAGAAGACATAACTGCTAGTGTTGTGTGTGGTCGTCATTTCCAGACGGTAAAGGATTGTTTGAAGCCAGCTTTAACCTTGGCAGATATTGATATATACGCCACTTTTATGACGACCCGTTCAGCCCTTCCTTCACAACATTCCGATTTAAGTTCAAATAATAGGATCAACACTAAAAGACATTTGTTGTGTCCTGTATCTTTGGTTAAACTTGGTTTGATTGGCTGTTTCTTTCTTGTTGTTGCTAAATACTTTCTCTCTGAGGAATATCAAGTTGAGCACGAATTGATGACTACCTAG 3783 45.1 MGRNSTAEKDLRQNAVSRCAGAAAMCGIALIVSGIRLDLSSLHVDARSPFPHPVHEQLEFSIDDLKAALRRRGPDSLGGVKVFISSKSSNPGEEQQFECFIERVDDGVAFQSQNDQYEMENGRFCSENGCILQSENSCSRPISGAEFYLLGATLQLRGLNPIVQPLRDASRNILVYNGEIFGGIHVECHENDAETLMLALGNCCACNFSLDMNTCGGECKRERTVVDILSKIQGPWSIIYWQDSAKTLWFGRDAFGRRSLLVHWPTVEDSRFLLSSVSPASSTFHGSGLEDDDGTCEVSFWEELPCGIYSISFDALRTDGYLIGEVKSHEWTNESLKELVEWKRTRIVPEPGDISTPYHKDLLSQHQSHSACLPNLQSVSGSIQAPVSTPAEILLDALRKSLIRRTSLYTIFKGTISASRKAELGPVAILFSGGLDSMILAALLDECLDTCYEIDLLNVSFDGCSAPDRISAKAGVKELSRIAPLRRHYIIELYLEWKLVEIDADLSNLTSETKHVMSLINPANTYMDLNIGIALWLASGGNGWIYESIDKDEKFHQRVKYKSEAKILLVGSGADEQCAGYGRHRTKYRQGGWHLLNEEMKLDIQRIWKRNLGRDDRCIADNGKEARFPFLDEDVIHTLLAFPLWEVTDLEKPAGTGDKKILREVAKLLGLHEAGALPKRAIQFGSRIARESNRKNFGSNRAANQASAGSVKFNRQSVLQPPPFNISLFRQSAPFCTPYAAGHLSASPTASLRRPPQSRRASVRRSPASSRSGNCGNGSEDQWRAEEAIAGNSEALKTLRELIVFPLLFSQEAQKIGLRWPRGLLLYGPPGTGKTSLVRAIVQECGAHLTTISPHSVHRAHAGESEKVLREAFSKASSHAISGKPSVIFIDEIDALCPHRDSRREQNVRITTQLSILMDSNKQSTSGRPQVVVVASTNRSGRFDAEIEVTAPTENERYQILRLYTRKVQLDPEVDLRAIAASCNGFVGADLEALCREAAMAALQSGAEMYSMYVGEGEALLRNTFRRARLAAPSIIFFDEADVVAAKRGGSSSGNTAVGERLLSTLLTEMDGLEEAKGILVLAATNRPHAIDAALMRPGRFDLVLYVPPPDLEARYEILRVHTRPMKIGSDVDLKKIAEDTELFTGAELEGLCREAGIVALREDITASVVCGRHFQTVKDCLKPALTLADIDIYATFMTTRSALPSQHSDLSSNNRINTKRHLLCPVSLVKLGLIGCFFLVVAKYFLSEEYQVEHELMTT 1260
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 35438332 35451717 - ClCG05G023650.2 Cla05g02389 273879
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g02389 1260 CDD AAA 821 949 - -
Cla05g02389 1260 Gene3D - 952 1005 - -
Cla05g02389 1260 Gene3D - 1110 1168 - -
Cla05g02389 1260 Gene3D - 788 951 IPR027417 -
Cla05g02389 1260 Gene3D - 1007 1109 IPR027417 -
Cla05g02389 1260 ProSitePatterns AAA-protein family signature. 1079 1097 IPR003960 GO:0005524|GO:0016887
Cla05g02389 1260 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1005 1163 IPR027417 -
Cla05g02389 1260 CDD Asn_Synthase_B_C 425 685 IPR001962 GO:0004066|GO:0006529
Cla05g02389 1260 Pfam Glutamine amidotransferase domain 164 276 IPR017932 -
Cla05g02389 1260 Pfam Asparagine synthase 591 668 IPR001962 GO:0004066|GO:0006529
Cla05g02389 1260 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 788 1007 IPR027417 -
Cla05g02389 1260 PANTHER ASPARAGINE SYNTHETASE DOMAIN-CONTAINING PROTEIN 1 25 705 - -
Cla05g02389 1260 Gene3D HUPs 388 718 IPR014729 -
Cla05g02389 1260 CDD AAA 1005 1109 - -
Cla05g02389 1260 Pfam AAA+ lid domain 1131 1175 IPR041569 -
Cla05g02389 1260 Pfam AAA+ lid domain 974 1007 IPR041569 -
Cla05g02389 1260 MobiDBLite consensus disorder prediction 750 779 - -
Cla05g02389 1260 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 420 706 - -
Cla05g02389 1260 SUPERFAMILY N-terminal nucleophile aminohydrolases (Ntn hydrolases) 65 279 IPR029055 -
Cla05g02389 1260 Gene3D Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 53 291 IPR029055 -
Cla05g02389 1260 SMART AAA_5 820 953 IPR003593 -
Cla05g02389 1260 SMART AAA_5 954 1111 IPR003593 -
Cla05g02389 1260 MobiDBLite consensus disorder prediction 746 782 - -
Cla05g02389 1260 Pfam ATPase family associated with various cellular activities (AAA) 824 947 IPR003959 GO:0005524|GO:0016887
Cla05g02389 1260 Pfam ATPase family associated with various cellular activities (AAA) 1004 1108 IPR003959 GO:0005524|GO:0016887
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g02389 Cla-Chr5:35438332 Cla06g01678 Cla-Chr6:30366821 4.62E-26 dispersed
Cla05g02389 Cla-Chr5:35438332 Cla04g00912 Cla-Chr4:24108654 6.01E-29 transposed
Cla05g02389 Cla-Chr5:35438332 Cla10g01920 Cla-Chr10:35062114 1.03E-27 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g02389 - - bhj:120081619 1283.09