Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g02389 ATGGGGAGGAATTCAACGGCTGAGAAAGACCTTCGACAGAACGCTGTCTCTCGCTGTGCGGGGGCGGCGGCAATGTGTGGAATCGCTTTGATCGTTTCTGGCATTCGCCTTGATTTATCATCTCTACATGTAGACGCCAGATCCCCGTTTCCTCATCCAGTTCACGAGCAACTTGAGTTTTCGATAGATGATCTTAAAGCGGCATTACGGAGAAGAGGGCCCGATAGCTTAGGCGGAGTGAAGGTTTTTATTTCTTCAAAATCTTCTAATCCCGGTGAAGAGCAGCAGTTTGAGTGTTTCATTGAGAGGGTTGATGATGGCGTTGCATTCCAGAGTCAAAATGATCAATACGAGATGGAAAATGGCCGGTTCTGTTCTGAAAATGGATGTATTCTCCAATCAGAGAACAGTTGCAGTAGGCCCATCTCTGGTGCGGAGTTTTATTTACTAGGGGCTACGTTGCAGCTTAGAGGGCTTAACCCTATTGTTCAGCCACTGAGGGATGCTTCCCGCAATATTCTTGTTTACAATGGTGAAATATTTGGTGGAATACACGTTGAGTGTCATGAAAACGATGCTGAAACTCTTATGCTAGCTCTTGGGAATTGTTGCGCATGTAATTTTAGTTTAGATATGAACACATGTGGAGGTGAATGTAAGAGAGAAAGAACTGTTGTAGATATTCTTTCAAAGATTCAAGGGCCTTGGTCAATCATCTACTGGCAGGATAGTGCAAAAACTTTGTGGTTTGGTCGGGATGCCTTTGGTAGGAGAAGTCTTCTTGTTCACTGGCCAACAGTGGAGGATTCTCGATTTCTGTTGTCTTCTGTATCACCAGCTTCTTCCACGTTTCACGGCTCAGGGCTTGAAGATGACGATGGTACTTGTGAAGTGAGCTTCTGGGAAGAACTACCATGTGGGATTTACAGCATCTCTTTTGATGCGCTGAGAACTGATGGTTACCTGATTGGTGAAGTCAAAAGCCATGAATGGACCAATGAATCCTTGAAAGAGCTTGTCGAGTGGAAAAGAACTCGTATTGTACCTGAACCTGGAGACATCTCCACTCCATATCACAAGGATCTTTTGTCACAACATCAAAGCCATTCAGCATGTTTACCTAACTTGCAATCAGTATCTGGGAGTATTCAAGCTCCTGTCTCAACTCCTGCAGAGATTCTGCTGGATGCTCTAAGGAAGTCTCTAATCCGGCGGACTTCACTTTATACAATTTTCAAGGGTACAATATCGGCTTCCAGAAAAGCAGAACTTGGTCCAGTGGCCATTCTTTTTTCTGGGGGATTGGATTCTATGATACTAGCAGCATTACTGGATGAATGTCTCGATACCTGCTATGAGATAGATCTTCTTAATGTCAGTTTTGATGGTTGTTCTGCACCTGATCGAATCTCTGCGAAGGCTGGAGTTAAGGAACTGAGTAGAATTGCCCCTCTAAGAAGGCATTATATCATTGAGCTCTATCTTGAGTGGAAGCTGGTTGAGATTGATGCTGACTTGTCAAATTTGACCTCTGAAACCAAGCACGTCATGTCGCTAATAAATCCTGCAAATACATACATGGACCTGAATATTGGAATAGCTTTGTGGCTGGCCTCTGGTGGCAATGGTTGGATTTATGAATCAATTGACAAGGATGAGAAGTTTCATCAACGTGTAAAATACAAGTCTGAGGCCAAGATTCTCCTTGTTGGTTCTGGTGCCGATGAGCAATGTGCTGGCTATGGTAGGCATCGAACAAAATATAGACAAGGGGGCTGGCATCTTTTAAATGAGGAAATGAAGTTGGATATTCAGAGAATCTGGAAGAGAAATCTAGGGAGAGATGACAGATGTATTGCAGATAATGGCAAGGAGGCTAGATTTCCCTTTTTGGATGAAGATGTTATACATACATTGCTAGCATTTCCTCTATGGGAGGTTACCGACCTTGAGAAACCTGCTGGGACCGGTGATAAGAAGATACTAAGGGAGGTTGCGAAACTACTTGGTCTGCATGAAGCAGGAGCTCTACCTAAAAGAGCAATACAGTTTGGCTCGAGGATTGCGAGGGAATCAAACCGCAAGAACTTTGGAAGCAACCGGGCTGCTAATCAGGCCTCAGCAGGAAGTGTGAAGTTCAACAGGCAATCCGTTCTTCAACCTCCCCCCTTCAACATCTCTCTGTTTCGCCAATCAGCGCCGTTTTGCACACCATACGCCGCCGGCCACCTTTCCGCCTCCCCTACCGCTTCCCTCCGTCGACCGCCGCAGTCTCGTCGCGCGTCCGTTCGCCGGTCGCCGGCAAGTTCTAGGAGTGGTAATTGTGGAAATGGTAGCGAGGACCAGTGGAGAGCTGAGGAAGCGATTGCTGGAAACTCCGAGGCCCTTAAAACATTGAGAGAGCTGATCGTCTTCCCGCTACTATTCTCCCAGGAAGCTCAAAAAATCGGTCTAAGATGGCCTCGAGGCTTGCTTTTATACGGTCCCCCTGGCACTGGCAAGACAAGTTTAGTACGTGCAATTGTTCAGGAATGCGGTGCACATTTAACCACTATCAGTCCCCATTCAGTTCACAGAGCACATGCTGGAGAAAGTGAAAAAGTTTTGCGTGAGGCCTTCTCCAAAGCATCATCTCATGCAATATCCGGAAAACCATCAGTTATCTTTATAGATGAAATTGATGCACTTTGTCCTCATCGGGATTCTAGGAGAGAGCAAAATGTTCGTATAACCACTCAACTTTCTATACTGATGGACTCCAATAAGCAATCAACATCTGGTAGACCACAAGTTGTCGTAGTTGCATCAACTAACAGGTCAGGGCGTTTTGATGCTGAAATAGAAGTAACAGCACCAACTGAGAATGAACGATATCAAATTCTTAGGCTGTACACAAGGAAGGTTCAATTGGATCCAGAAGTTGATTTACGAGCCATAGCTGCATCATGCAATGGGTTTGTAGGAGCTGACTTGGAGGCTCTGTGTCGTGAGGCTGCAATGGCTGCATTGCAAAGTGGTGCAGAGATGTACTCTATGTATGTTGGCGAGGGAGAGGCTCTACTGCGCAACACTTTTAGAAGAGCTCGTCTCGCTGCACCAAGCATAATATTTTTTGATGAGGCCGATGTTGTTGCTGCCAAAAGAGGTGGGAGTTCAAGTGGTAACACCGCTGTAGGAGAGAGGCTTCTATCTACATTGTTAACTGAGATGGATGGTCTTGAAGAAGCAAAAGGAATACTGGTTTTAGCTGCTACAAATCGTCCTCATGCCATTGATGCTGCGCTTATGAGACCAGGACGCTTTGACTTGGTGCTCTATGTACCTCCACCAGATTTAGAAGCTCGGTATGAGATACTTCGCGTTCATACTCGTCCAATGAAAATTGGAAGTGATGTCGACCTCAAAAAGATCGCAGAGGATACGGAGCTGTTCACTGGGGCCGAACTCGAAGGCCTATGTAGGGAAGCTGGAATTGTAGCTTTAAGAGAAGACATAACTGCTAGTGTTGTGTGTGGTCGTCATTTCCAGACGGTAAAGGATTGTTTGAAGCCAGCTTTAACCTTGGCAGATATTGATATATACGCCACTTTTATGACGACCCGTTCAGCCCTTCCTTCACAACATTCCGATTTAAGTTCAAATAATAGGATCAACACTAAAAGACATTTGTTGTGTCCTGTATCTTTGGTTAAACTTGGTTTGATTGGCTGTTTCTTTCTTGTTGTTGCTAAATACTTTCTCTCTGAGGAATATCAAGTTGAGCACGAATTGATGACTACCTAG 3783 45.1 MGRNSTAEKDLRQNAVSRCAGAAAMCGIALIVSGIRLDLSSLHVDARSPFPHPVHEQLEFSIDDLKAALRRRGPDSLGGVKVFISSKSSNPGEEQQFECFIERVDDGVAFQSQNDQYEMENGRFCSENGCILQSENSCSRPISGAEFYLLGATLQLRGLNPIVQPLRDASRNILVYNGEIFGGIHVECHENDAETLMLALGNCCACNFSLDMNTCGGECKRERTVVDILSKIQGPWSIIYWQDSAKTLWFGRDAFGRRSLLVHWPTVEDSRFLLSSVSPASSTFHGSGLEDDDGTCEVSFWEELPCGIYSISFDALRTDGYLIGEVKSHEWTNESLKELVEWKRTRIVPEPGDISTPYHKDLLSQHQSHSACLPNLQSVSGSIQAPVSTPAEILLDALRKSLIRRTSLYTIFKGTISASRKAELGPVAILFSGGLDSMILAALLDECLDTCYEIDLLNVSFDGCSAPDRISAKAGVKELSRIAPLRRHYIIELYLEWKLVEIDADLSNLTSETKHVMSLINPANTYMDLNIGIALWLASGGNGWIYESIDKDEKFHQRVKYKSEAKILLVGSGADEQCAGYGRHRTKYRQGGWHLLNEEMKLDIQRIWKRNLGRDDRCIADNGKEARFPFLDEDVIHTLLAFPLWEVTDLEKPAGTGDKKILREVAKLLGLHEAGALPKRAIQFGSRIARESNRKNFGSNRAANQASAGSVKFNRQSVLQPPPFNISLFRQSAPFCTPYAAGHLSASPTASLRRPPQSRRASVRRSPASSRSGNCGNGSEDQWRAEEAIAGNSEALKTLRELIVFPLLFSQEAQKIGLRWPRGLLLYGPPGTGKTSLVRAIVQECGAHLTTISPHSVHRAHAGESEKVLREAFSKASSHAISGKPSVIFIDEIDALCPHRDSRREQNVRITTQLSILMDSNKQSTSGRPQVVVVASTNRSGRFDAEIEVTAPTENERYQILRLYTRKVQLDPEVDLRAIAASCNGFVGADLEALCREAAMAALQSGAEMYSMYVGEGEALLRNTFRRARLAAPSIIFFDEADVVAAKRGGSSSGNTAVGERLLSTLLTEMDGLEEAKGILVLAATNRPHAIDAALMRPGRFDLVLYVPPPDLEARYEILRVHTRPMKIGSDVDLKKIAEDTELFTGAELEGLCREAGIVALREDITASVVCGRHFQTVKDCLKPALTLADIDIYATFMTTRSALPSQHSDLSSNNRINTKRHLLCPVSLVKLGLIGCFFLVVAKYFLSEEYQVEHELMTT 1260
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 35438332 35451717 - ClCG05G023650.2 Cla05g02389 273879

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g02389 1260 CDD AAA 821 949 - -
Cla05g02389 1260 Gene3D - 952 1005 - -
Cla05g02389 1260 Gene3D - 1110 1168 - -
Cla05g02389 1260 Gene3D - 788 951 IPR027417 -
Cla05g02389 1260 Gene3D - 1007 1109 IPR027417 -
Cla05g02389 1260 ProSitePatterns AAA-protein family signature. 1079 1097 IPR003960 GO:0005524|GO:0016887
Cla05g02389 1260 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1005 1163 IPR027417 -
Cla05g02389 1260 CDD Asn_Synthase_B_C 425 685 IPR001962 GO:0004066|GO:0006529
Cla05g02389 1260 Pfam Glutamine amidotransferase domain 164 276 IPR017932 -
Cla05g02389 1260 Pfam Asparagine synthase 591 668 IPR001962 GO:0004066|GO:0006529
Cla05g02389 1260 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 788 1007 IPR027417 -
Cla05g02389 1260 PANTHER ASPARAGINE SYNTHETASE DOMAIN-CONTAINING PROTEIN 1 25 705 - -
Cla05g02389 1260 Gene3D HUPs 388 718 IPR014729 -
Cla05g02389 1260 CDD AAA 1005 1109 - -
Cla05g02389 1260 Pfam AAA+ lid domain 1131 1175 IPR041569 -
Cla05g02389 1260 Pfam AAA+ lid domain 974 1007 IPR041569 -
Cla05g02389 1260 MobiDBLite consensus disorder prediction 750 779 - -
Cla05g02389 1260 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 420 706 - -
Cla05g02389 1260 SUPERFAMILY N-terminal nucleophile aminohydrolases (Ntn hydrolases) 65 279 IPR029055 -
Cla05g02389 1260 Gene3D Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 53 291 IPR029055 -
Cla05g02389 1260 SMART AAA_5 820 953 IPR003593 -
Cla05g02389 1260 SMART AAA_5 954 1111 IPR003593 -
Cla05g02389 1260 MobiDBLite consensus disorder prediction 746 782 - -
Cla05g02389 1260 Pfam ATPase family associated with various cellular activities (AAA) 824 947 IPR003959 GO:0005524|GO:0016887
Cla05g02389 1260 Pfam ATPase family associated with various cellular activities (AAA) 1004 1108 IPR003959 GO:0005524|GO:0016887
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g02389 - - - bhj:120081619 1283.09
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g02389 Cla-Chr5:35438332 Cla06g01678 Cla-Chr6:30366821 4.62E-26 dispersed
Cla05g02389 Cla-Chr5:35438332 Cla04g00912 Cla-Chr4:24108654 6.01E-29 transposed
Cla05g02389 Cla-Chr5:35438332 Cla10g01920 Cla-Chr10:35062114 1.03E-27 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g30 . . . . . Bpe10g00901 . Bma15g00130 Cmo04g01790 . . . . . Sed06g1781 . Cpe01g01509 Bhi07g01483 Tan04g0990 Cmetu10g1518 Lac13g0381 Hepe10g1800 . . Cla05g02389 . . Cco05g2636 Clacu05g2563 Cmu05g2420 Cre05g2537 Cone13ag0903 Cone19ag0900 . . Lsi04g00360 Csa05g02517 Chy10g01061 Cme10g00354 Blo06g00929 . . . . . . . . . . Cma04g01705 . Car04g01740 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007690 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 2 1 1 3 2 1 35