Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g02390 ATGGGGGAAGCAAACGAAGGAAGAAGTAGAGGAATGGAGAAAGTTCCTCTACAAACTGAAAAGTACCCAACAGATCTGTTGCAGAGATTTTTGTGTAGCAATTCACAACAGACCCAAATTCGGGCGTTTAATGAAGAAGAAGAAGAAGATGGAGAGGAGATTGAGCTTAATCTTGGGCTTTCACTAGGGGGTCGATTTGGGGTTGACAAAAATTCCAAGAAGCTTATTCGATCATCGTCCATAGCCGGTACCATGCTTTTGAGGGACGATGAGGCTTCTACTCCAGCAGCAGTATCGTACCCGGCGGCGCTTATTCGGACCTCGTCTCTTCCGCCGGAGACGGAGGAGGAGTGGAGGAAGAGGAAGGAATTGCAGACGTTGAGGCGAATGGAGGCGAAAAGGAGACGATTTGAGAAGCAGAGGAATAAGGATGGGATTGGGATGGGGACCGGCGGGTGTTTTGAAGAAGAGAGGCGTGAAATTGAAGGCCTTACAGGATTGAATTTGAGAGAGAAAAGGCCTGGTTCGGCTATTTCGACGGTGGCACCGCCATTCGGGTTGCCAACGTGGGCTGCAGCTGCTCGACAGGCTCTTACTGGCGGAATTGTGGATGAGGGTGGCAAAGGCAAAGGTGGCTGTGCATCAGGTGGAGGCGGAGGCTTACCGGCTGTCGGGCAGCCTGCCTCTCAGTGCTCCGCTGAATCGCAGGGCGGAAGCTCGTCGGGAATGTCGGAATTGGACAGTAAACACATCCAAGAGAATATTGTCATAGTTCATGATAGGACTATTTCTTTGCTTGCAATTCATAATCTGAAAGGAGTCAGGTTTGACAGTCAGTTTTCTATCAAAATGATTTTGTTTGGGAATTCGAGAGCGAGTAGTAGGTTGTGCTATGTGACTGGAGAATTTCCAGTGACTACTAGATGGAACAATTGGTTCAGAATTTGTATCGCTCATGTTGTTATAAACAAAAGTATCAGTGAAGAAGGATCAAGCAGTTACGGTGAAGCGAGAAGCTCCTCACAAGAGCGAGGCAACCCAGAGGCTGCAGGTTCTTCAGGATCGAAGATGTGTGAGAACCCATCTGGCAGTTCCAAAACAGAGACGAAAAATCCATCCAAGAAACCCGATTCAGGTGAGAACAGGGGAAGAGAAGCGGGAACGACATCGATGGAAGACATGCCGTGTGTGTTTACAATAGGGGACGGGCCAGATGGGAGAAGGGTGGAAGGAATTCTTTACAAGTATGGAAAAGGTGAGGAAGTTAGGATAATGTGTGTTTGCCATGGGAAGTTTCTGTCACCAGCTGAGTTTGTGAAGCATGCTGGTGGAAAAAATGTGGCTCATCCCTTAAGACATATAGTTGTCAATCCCAATTCTGGTCCCTGTTTGTGA 1395 48.1 MGEANEGRSRGMEKVPLQTEKYPTDLLQRFLCSNSQQTQIRAFNEEEEEDGEEIELNLGLSLGGRFGVDKNSKKLIRSSSIAGTMLLRDDEASTPAAVSYPAALIRTSSLPPETEEEWRKRKELQTLRRMEAKRRRFEKQRNKDGIGMGTGGCFEEERREIEGLTGLNLREKRPGSAISTVAPPFGLPTWAAAARQALTGGIVDEGGKGKGGCASGGGGGLPAVGQPASQCSAESQGGSSSGMSELDSKHIQENIVIVHDRTISLLAIHNLKGVRFDSQFSIKMILFGNSRASSRLCYVTGEFPVTTRWNNWFRICIAHVVINKSISEEGSSSYGEARSSSQERGNPEAAGSSGSKMCENPSGSSKTETKNPSKKPDSGENRGREAGTTSMEDMPCVFTIGDGPDGRRVEGILYKYGKGEEVRIMCVCHGKFLSPAEFVKHAGGKNVAHPLRHIVVNPNSGPCL 464
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 35459494 35462594 + ClCG05G023690.1 Cla05g02390 273880
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g02390 464 PANTHER AFP HOMOLOG 2 19 460 IPR031307 GO:0007165
Cla05g02390 464 Pfam Ethylene-responsive binding factor-associated repression 49 83 IPR012463 -
Cla05g02390 464 PANTHER NINJA-FAMILY PROTEIN AFP1 19 460 - -
Cla05g02390 464 MobiDBLite consensus disorder prediction 330 369 - -
Cla05g02390 464 Coils Coil 120 140 - -
Cla05g02390 464 MobiDBLite consensus disorder prediction 330 395 - -
Cla05g02390 464 MobiDBLite consensus disorder prediction 224 245 - -
Cla05g02390 464 MobiDBLite consensus disorder prediction 228 245 - -
Cla05g02390 464 Pfam Tify domain binding domain 422 456 IPR032308 -
Cla05g02390 464 Pfam Putative nuclear localisation signal 104 248 IPR032310 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g02390 Cla-Chr5:35459494 Cla11g00207 Cla-Chr11:2413440 4.98E-10 dispersed
Cla07g00203 Cla-Chr7:2198005 Cla05g02390 Cla-Chr5:35459494 2.57E-21 transposed
Cla04g01152 Cla-Chr4:26727140 Cla05g02390 Cla-Chr5:35459494 1.02E-25 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g02390 - - csv:101220339 379.407