Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g02392 ATGTGGAAAAGAGTTCTATGTTCAATTCCTCACAGGTCGTTTTCCTCTGCGCCAGAAACCCCATCTCTCTACTCCTTCCTCCAACCTTCTCTTTTTGCCCTAAAGAGAACCCCATTTTCGCCTTCTCAAGACTCCACCGACCTCCGTCAGGATCCAACTCCTCAAATTTTAACTCCAGATCGCGTCGCCGCCGTAGAAACGGCCCTCCACAAGTCCCTCCTCACCAGCGACACTGATGAGGCATGGAAATCCTTCAAATTGCTCACGAGAAGCTCTGTTTTCCCATGTAAGCCTCTTACCAATTCACTTATTGCTCACTTGTCCTCAATTGGGGACGTTCATAATCTGAAAAGAGCCTTTGCATCTGTGGTGTTTGTTATTGAGAAGAAACCTGAACTGTTGGATTTTGGATCTGTTAAAGCTTTATTGGCTTCTATGAAATGTGCCAACACTGCTGCCCCTGCTCTTTCTTTGATCAAATGCATGTTTAAGAATCGATGCTTCGTGCCTTTTAGTGTTTGGGGCAATGAACTTGTTGATATTTGCAGACAGAATGGGAGTTTGATTCCCTTTTTAAGAGTTTTTGAAGAGAACTGTAGGATTGCTTTAGATGAGAGCTTGGATTTTATGAAACCAGACCTTATTGCTTGTAATGCAGCACTTGAAGGGTGTTGCTATGAGCTTGAATCTGTAACAGATGCTGAGAAAGTCGTTGAAACGATGTCACTTTTGTATCTTCGGCCTGATGAAGTGAGTTTTGGTGCTCTTGCTTATTTGTATGCATTGAAGGGGCTTGAACAGAAGATAATAGAGTTAGAAGTCTTGATGGGAAATTTTGGTTTTAATCATAAAGATCTCTTTTTTAGTAGTTTGATTAGTGGATACGTTCATGCGAGCAACTTTGCTGTTGTTTCCAAGACTATGTTGCGTAGTTTAAAAGATGAATGTGGAGCACATGTACATTTTGGTGAAAAAACGTATTTGGAAATGGTTAAGGGGTTTATTCAAAGTGGAAATCTGAAGGAATTATCTGCATTGATTGTCAATGCTAAGAATTTGGAGTCTTCATCAGAAGTTGATGGATCTATTGGATTTGGTATCATTAATGCATGTGTTAATATTGGATGGTTAGATAAGGCGCATGACATTCTGAACGAAATCAATTCCCAGGGAGTTTCCCTGGGCCTTGGAGTCTATCTGCCAATCTTGAAAGCTTACAGGAAGGAGCATCGAACAGCTGAAGCCACCCGATTAATCATGGATATTAGCAGTTCTGGGCTTCAGTTGGACGCAGAGAGTTATGATGCTCTAATAGAGGCATCGATGTCGAACCAAGATTTTCAGTCAGCTTTTGCTTTGTTCAGGAATATGAGAGAAACAAGAAAATCTGACATGAAAGCTAGTTATCTAACTATTATGACTGGCTTAATGGAGAACCATAGGCCTGAGTTGATGGCTGCCTTCTTAGATGAAGTTGTTGAAGATCCTCTTGTGGAAGTTGGAACTCATGATTGGAACTCTATTATACATGCCTTTTGCAAAGCTGGAAGACTCGAGGATGCGAGGAGAACATTCCGAAGAATGAAATTTCTGCAGTTTGAACCAAATGAGCAGACCTTCTTGTCCCTAATTAATGGCTATGTGTCTGCAGAGAGATATTTCTGTGTTCTGATGCTGTGGAACGAACTTAAGTGGAAGATTACAGCAAATGGGGAGACAGGTATCAAACTTGACAACAACTTGGTTGATGCATTCCTGTATGCTTTGGTCAAGGGAGGTTTCTTCGATGCCGTGATGCAAGTCGTTGAAAAAACTAAGGATACGAAGATCTTTGTTGATAAGTGGAAGTATAAGCAAGCATTCATGGAGACTCATAAGAAACTCAAAGTGGCAAAGTTGAGGAGGAGGAACCACAGGAAAATGGAATCATTAATTGCTTTCAAGAACTGGGCTGGTCTGAATGCTTGA 1968 41.21 MWKRVLCSIPHRSFSSAPETPSLYSFLQPSLFALKRTPFSPSQDSTDLRQDPTPQILTPDRVAAVETALHKSLLTSDTDEAWKSFKLLTRSSVFPCKPLTNSLIAHLSSIGDVHNLKRAFASVVFVIEKKPELLDFGSVKALLASMKCANTAAPALSLIKCMFKNRCFVPFSVWGNELVDICRQNGSLIPFLRVFEENCRIALDESLDFMKPDLIACNAALEGCCYELESVTDAEKVVETMSLLYLRPDEVSFGALAYLYALKGLEQKIIELEVLMGNFGFNHKDLFFSSLISGYVHASNFAVVSKTMLRSLKDECGAHVHFGEKTYLEMVKGFIQSGNLKELSALIVNAKNLESSSEVDGSIGFGIINACVNIGWLDKAHDILNEINSQGVSLGLGVYLPILKAYRKEHRTAEATRLIMDISSSGLQLDAESYDALIEASMSNQDFQSAFALFRNMRETRKSDMKASYLTIMTGLMENHRPELMAAFLDEVVEDPLVEVGTHDWNSIIHAFCKAGRLEDARRTFRRMKFLQFEPNEQTFLSLINGYVSAERYFCVLMLWNELKWKITANGETGIKLDNNLVDAFLYALVKGGFFDAVMQVVEKTKDTKIFVDKWKYKQAFMETHKKLKVAKLRRRNHRKMESLIAFKNWAGLNA 655
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 35468731 35470698 - ClCG05G023710.1 Cla05g02392 273882
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g02392 655 Gene3D Tetratricopeptide repeat domain 470 652 IPR011990 GO:0005515
Cla05g02392 655 Gene3D Tetratricopeptide repeat domain 63 361 IPR011990 GO:0005515
Cla05g02392 655 Gene3D Tetratricopeptide repeat domain 362 469 IPR011990 GO:0005515
Cla05g02392 655 TIGRFAM PPR: pentatricopeptide repeat domain 505 537 IPR002885 -
Cla05g02392 655 PANTHER OS01G0788900 PROTEIN 1 655 - -
Cla05g02392 655 Pfam PPR repeat family 505 548 IPR002885 -
Cla05g02392 655 Pfam Pentatricopeptide repeat domain 418 461 IPR002885 -
Cla05g02392 655 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 501 535 IPR002885 -
Cla05g02392 655 Pfam PPR repeat 367 392 IPR002885 -
Cla05g02392 655 PANTHER BNAC05G43320D PROTEIN 1 655 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g02392 Cla-Chr5:35468731 Cla09g00671 Cla-Chr9:6364522 3.70E-66 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g02392 - - csv:101212045 1199.5