Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g02393 ATCTTTGTTATTTCCCCATTGTTTGACCATATAACCAAAGTGGAGTTACACACTTGTAAGTTAAAGCATAGTAAAGAAGGGGCTATAGCATGTATGGTATTGTCCCTCTTCTTTTTGGGAACCTTCCCTGCTCTTTTAAGTCTACTTGAACGGCGAGGGCGTCTTCCTCAGCATACTTTTCTTGATTACTCCATAACAAATTATTTAGCTGCTGTAATTTTTGCGCTGACACTTGGTCAGTTTGGAAATAGCTCACCAGATAGACCAAATTTTATCCAACAGCTTTCTCAGGTGCAGGATAATTGGGCTTCTGTTATATTTGCTATGGCTGGTGGTGCAGCGCTGAGTATTGGAAATCTTTCTTCTCAATATGCTTTGGCATTTGTTGGTTTGTCAGTTACAGAAGTGCTCAATTGTAGCATAATAGTAGTTTTAGGCTCAACCATGAACTATTTTCTTGATGGCAAAATTAATAGAGCGGAGATTCTTTTCCCCGGCATTGCTTGCTTTTTGATTGCGGTTTTTCTTGGCTCTGCTGTTCACTTATCCAACACAGCTGATGACAAAATAAAGTTGGAAAGCTTGTCCATCGATTCAAAAAAGGAGTCCAAGGCAATTGCTGTCTCTCCAATATCAGGTCAGGTTGAATCAGCGGACCTGGAGAATGCCGATTGTTCCTCGCGAAATGCAGAAGCTGGAACTGCAGACTTTCTTGTTCAAGTTGAAAGCAGAAGGTCCATCAAGGTGTCTGGTAAGAGCACACTAGTTGGACTGTGCATAATTTTCTTTGCTGGTGTTTCCCTTTCACTCTTCTCACCTGCATTCAATTTGGCTACAAATGATCAATGGCACACTCTAAAGGAAGGCATCCCACACTTGTCTGTCTATACTGCATTTTTCTACTTCTCGACCTCTTTTTTCGTCTTGGCCGTCGTTCTTAACATCATCCTCCTTTACCGCCCTATACTGAACTTACCCAAAACATCATTCAAGGCTTATCTGAATGATTGGGATGGTAGAGGATGGGCCTTTTTGGCTGGATTTTTGTGTGGATTTGGCAATGGTTTGGAGTTCATGGGTGGTCAAGCTGCTGGATATGCAGCAGCAGATTCTGTGGAGGCATTTCCACTGGTGAGCACAATTTGGGGTGTTGTTCTGTTTGGAGAATACCGAAGATCGTCAAGAAAAACTCACGTTCTGCTAGTGAGCATGTTGTTTATGTTCACAGTAGCTGTTGTTAGTAAAGGTGGTGCTATAGCATGTATGCTTTTTGCGCTTTTCTTTTTGGGAACATGGCCTGCACTCTTGACTCTCCTCGAACGACGGGGGCGTCTTCCTCAGCATACTTACCTCGATTACTCCATAACAAATTTATTGGCTGCTGTAATTATTGCTTTTACATTTGGTCAGATTGGACAGAGCTCAGATGATAATCCAAATTTTATTCAACAACTTTATCAGGAGAATTGGCCTTCTGTCTTGTTTGCAATGGCAGGTGGTATAGTTCTAAGTCTTGGGAATCTTTCTACTCAGTATGCTTTTGCCTTTGTTGGTTTATCAGTTACCGAAGTGATCACTGCAAGTATAACAGTTGTTATAGGTACAACCGTAAACTACTTTCTCGACGACAAAATTAATAGAGCCGAGGTACTTTTCCCTGGTGTTGCTTGCTTTTTGATTGCTGTATGTCTTGGCTCTGCTGTTCACTCATCCAACACGGCTGATAACAAAGCGAAACTGGAAAAATTGTCTGCCGATACAGAAAAAGGGTTGAAGACAATTAATGCAGCTTCATTTTCAATCAAAGACTTGGAAAGTGTCGATTATTTTTCACTAAATGCAAAAGCTGGGACTGCAGACTTTTTGGTTGAACTTGAGAAGAGAAGATCCATTAAGGTGTTTGGTAAGAGCACATTCATTGGACTGTTCTTAACTTTCTTTGCTGGTGTTTGCTTTTCTCTCTTCTCACCGGCATTCAATTTGGCCACGAACGATCAATGGCACGCTCTAAAGGAAGGCGTCCCCCACTTGGATGTTTACACCGCATTTTTCTACTTCTCAATCTCTTGTTTTGTCTTAGCTGTCATTCTTAACGTTGTCTTCCTTTACCGCCCCATACTTAACTTGCCCAAAACAACATTCAAGGCTTATCTAAATGACTGGAATGGTAGAGGATGGGCCTTGTTGGCTGGATTATTGTGTGGATTTGGCAATGGCCTGCAGTTCATGGGTGAATACCGTAGATCGTCCAAGAAAACATATGCTTTGCTCATCAGCATGTTGTTTACGTTTATGGTTGCTGTTGGTGTTCTAATGGCTTCAGCAGGACATCGAAAGCAA 2340 41.75 IFVISPLFDHITKVELHTCKLKHSKEGAIACMVLSLFFLGTFPALLSLLERRGRLPQHTFLDYSITNYLAAVIFALTLGQFGNSSPDRPNFIQQLSQVQDNWASVIFAMAGGAALSIGNLSSQYALAFVGLSVTEVLNCSIIVVLGSTMNYFLDGKINRAEILFPGIACFLIAVFLGSAVHLSNTADDKIKLESLSIDSKKESKAIAVSPISGQVESADLENADCSSRNAEAGTADFLVQVESRRSIKVSGKSTLVGLCIIFFAGVSLSLFSPAFNLATNDQWHTLKEGIPHLSVYTAFFYFSTSFFVLAVVLNIILLYRPILNLPKTSFKAYLNDWDGRGWAFLAGFLCGFGNGLEFMGGQAAGYAAADSVEAFPLVSTIWGVVLFGEYRRSSRKTHVLLVSMLFMFTVAVVSKGGAIACMLFALFFLGTWPALLTLLERRGRLPQHTYLDYSITNLLAAVIIAFTFGQIGQSSDDNPNFIQQLYQENWPSVLFAMAGGIVLSLGNLSTQYAFAFVGLSVTEVITASITVVIGTTVNYFLDDKINRAEVLFPGVACFLIAVCLGSAVHSSNTADNKAKLEKLSADTEKGLKTINAASFSIKDLESVDYFSLNAKAGTADFLVELEKRRSIKVFGKSTFIGLFLTFFAGVCFSLFSPAFNLATNDQWHALKEGVPHLDVYTAFFYFSISCFVLAVILNVVFLYRPILNLPKTTFKAYLNDWNGRGWALLAGLLCGFGNGLQFMGEYRRSSKKTYALLISMLFTFMVAVGVLMASAGHRKQ 780
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 35472487 35481333 - ClCG05G023720.1 Cla05g02393 273883

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g02393 780 Pfam Ureide permease 59 413 IPR009834 GO:0016021|GO:0071705
Cla05g02393 780 Pfam Ureide permease 449 744 IPR009834 GO:0016021|GO:0071705
Cla05g02393 780 PANTHER UREIDE PERMEASE 1-RELATED-RELATED 744 777 IPR030189 GO:0016021|GO:0022857|GO:0071705
Cla05g02393 780 PANTHER BNAC09G21970D PROTEIN 2 412 - -
Cla05g02393 780 PANTHER BNAC09G21970D PROTEIN 744 777 - -
Cla05g02393 780 PANTHER BNAC09G21970D PROTEIN 413 744 - -
Cla05g02393 780 PANTHER UREIDE PERMEASE 1-RELATED-RELATED 413 744 IPR030189 GO:0016021|GO:0022857|GO:0071705
Cla05g02393 780 PANTHER UREIDE PERMEASE 1-RELATED-RELATED 2 412 IPR030189 GO:0016021|GO:0022857|GO:0071705
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g02393 - - - soe:110791637 976.852
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g02393 Cla-Chr5:35472487 Cla09g00818 Cla-Chr9:8368862 0 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g43 . . . . . Bpe10g00898 . Bma15g00133 Cmo04g01786 Cmo18g01129 . Cma18g01107 . Car18g01021 . Cpe09g00220 Cpe01g01505 Bhi07g01495 Tan04g1007 . Lac13g0373 Hepe10g1793 . . Cla05g02393 . . Cco05g2641 Clacu05g2568 Cmu05g2425 Cre05g2542 Cone13ag0908 . Cone6ag0529 . Lsi04g00364 Csa05g02510 Chy10g01057 Cme10g00358 . . . . . . . . . . . Cma04g01700 . Car04g01737 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000563 1 11 1 1 1 3 3 2 3 2 2 3 5 3 3 5 3 1 3 3 4 1 1 6 4 3 3 10 16 1 108