Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cla05g02394 | ATGGCTGTTTTCGTGTTCTTAGTGTTTGTTCTTGCGCTAACTGGTCGATCTTATGCCAACTATTGCTTGTGTAGAGATGGGGCAACCCAACAAGCCCTTCAGAAGGCACTGGACTATGCTTGTGGAGCTGGAGCTGACTGTTCTCCAATCCTCTCCAGTGGCGCTTGTTTTCAGCCCAACACTGTCAAAGATCACTGTAATTACGCTGTCAATAGTTATTTCCAGCGAAAGGGGCAAGTCCAAGGAAGCTGTGACTTTAATGGCGCCGCCACGCCCAGCGTTACCCTTACTGCCTCTGTGCCCTCTGGTTGTGTCTATCCTTCTAGCCCCAGCAATGCGGGAACATCGCCGACGAACTCCGGCGGAACCACACCGACGATGACACCAGGGACGCCGTCGACGACGAATCCAGGAATGACGCCGACGGTGTTCGGCAACGGAATCAGCCCGAGTGGGAGCGGCTCCGGTTTCAACGACGGCAGCGGCAGCGTGGGTTTCAATGAAAAGAGGAACTTGCTTTTGGCAGTGGGCCTAACTCTGTGGCTTTCCGTATTGTTTCTCTGGGGATGA | 570 | 53.86 | MAVFVFLVFVLALTGRSYANYCLCRDGATQQALQKALDYACGAGADCSPILSSGACFQPNTVKDHCNYAVNSYFQRKGQVQGSCDFNGAATPSVTLTASVPSGCVYPSSPSNAGTSPTNSGGTTPTMTPGTPSTTNPGMTPTVFGNGISPSGSGSGFNDGSGSVGFNEKRNLLLAVGLTLWLSVLFLWG | 189 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 35488716 | 35490368 | - | ClCG05G023730.1 | Cla05g02394 | 273884 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cla05g02394 | 189 | Pfam | X8 domain | 21 | 91 | IPR012946 | - | |
| Cla05g02394 | 189 | PANTHER | BETA-1,3 GLUCANASE | 1 | 176 | IPR044788 | - | |
| Cla05g02394 | 189 | PANTHER | CARBOHYDRATE-BINDING X8 DOMAIN PROTEIN | 1 | 176 | - | - | |
| Cla05g02394 | 189 | Gene3D | - | 17 | 108 | - | - | |
| Cla05g02394 | 189 | MobiDBLite | consensus disorder prediction | 109 | 156 | - | - | |
| Cla05g02394 | 189 | SMART | X8_cls | 20 | 106 | IPR012946 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cla05g02394 | Cla-Chr5:35488716 | Cla06g00760 | Cla-Chr6:10140412 | 4.22E-28 | dispersed | |
| Cla04g01158 | Cla-Chr4:26767050 | Cla05g02394 | Cla-Chr5:35488716 | 2.42E-34 | wgd | |
| Cla05g02394 | Cla-Chr5:35488716 | Cla06g01545 | Cla-Chr6:29028344 | 3.32E-41 | wgd | |
| Cla05g02394 | Cla-Chr5:35488716 | Cla08g01041 | Cla-Chr8:23098580 | 1.19E-42 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cla05g02394 | - | - | csv:101212531 | 303.908 |