Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g02397 ATGTCGTCCGCCGAGAAGGAAAGAGAGACGCAGGTCTACATGGCCAAGCTTGCAGAACAGGCCGAACGCTATGACGAAATGGTGGAGTGTATGAAGAAAGTTGCTAAACTAGACGTTGAGCTAACCGTAGAAGAGAGAAACTTGCTTTCTGTTGGATACAAAAATGTTATAGGTGCTAGACGAGCTTCTTGGCGCATCATGTCCTCGATTGAACAGAAGGAAGAGTCCAAAAGCAATGAGAATAATGTTAAACTTATTAAGAGTTACCGTCAGAAGGTGGAGGAAGAGCTTTCCAAGATCTGTACCGATATTCTGACTATTATTGACAAGCACCTCATCCCTTCTTCAACCTCTTCAGAAGCATCGGTTTTCTATTACAAGATGAAAGGTGACTATTACCGATATCTTGCTGAGTTCAAAACAGATCAAGAAAGAAAGGAGGCAGCTGACCAGTCATTGAAGGGATACGAGGCATGTTTATTTCTCAATCTTTCTTTAACAAGGACTGAATGTTTTGATTTTTATTTGCTATCTTACTCTACTGCTTCGACCACCGCCAATACCGAACTTCCATCAACTCACCCTATCCGTCTTGGCCTTGCCCTCAACTTTTCTGTCTTCTACTATGAGATTATGAATTCCCCTGAAAGGGCTTGCCACTTGGCTAAACAAGCTTTTGACGAGGCAATTGCAGAGTTGGATACTTTGAGTGAGGAATCATACAAGGACAGTACCCTCATAATGCAGTTGCTGAGAGATAACCTCACTCTCTGGACATCTGATTTACCAGAAGATGGAGGTGAAGAGAACGTCAAAGGTGAGGATTCCAAACCGGCAGCACCAGCCCCCGAGGTAATTTTCCTTCGTCATGATATTTTTCACAGAAAAATTTCTAGTACTAGAGTAGTACCTGCACTCCCATTCCTAATTTGGCACTTCTTAAATTCTACTCTTGTGGCAAGCAATGAAGGGGAGATATTCAGCATTAATGGTAAAAATGAGATAACCCCTCACACAACGACTGGTTTGGACATCACATTCACTCGCAATGGAGTTATGGATCCGTACAATGGTGGCTTGTGA 1083 42.75 MSSAEKERETQVYMAKLAEQAERYDEMVECMKKVAKLDVELTVEERNLLSVGYKNVIGARRASWRIMSSIEQKEESKSNENNVKLIKSYRQKVEEELSKICTDILTIIDKHLIPSSTSSEASVFYYKMKGDYYRYLAEFKTDQERKEAADQSLKGYEACLFLNLSLTRTECFDFYLLSYSTASTTANTELPSTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSDLPEDGGEENVKGEDSKPAAPAPEVIFLRHDIFHRKISSTRVVPALPFLIWHFLNSTLVASNEGEIFSINGKNEITPHTTTGLDITFTRNGVMDPYNGGL 360
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 35521249 35524046 - ClCG05G023760.1 Cla05g02397 273887
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g02397 360 PRINTS 14-3-3 protein zeta signature 40 69 IPR000308 -
Cla05g02397 360 PRINTS 14-3-3 protein zeta signature 89 113 IPR000308 -
Cla05g02397 360 PRINTS 14-3-3 protein zeta signature 120 142 IPR000308 -
Cla05g02397 360 SMART 1433_4 8 273 IPR023410 -
Cla05g02397 360 PANTHER 14-3-3 PROTEIN 168 279 IPR000308 -
Cla05g02397 360 PANTHER BNAC03G57490D PROTEIN 4 159 - -
Cla05g02397 360 PANTHER BNAC03G57490D PROTEIN 168 279 - -
Cla05g02397 360 PANTHER 14-3-3 PROTEIN 4 159 IPR000308 -
Cla05g02397 360 Pfam 14-3-3 protein 178 259 IPR023410 -
Cla05g02397 360 Pfam 14-3-3 protein 14 160 IPR023410 -
Cla05g02397 360 SUPERFAMILY 14-3-3 protein 7 261 IPR036815 -
Cla05g02397 360 Coils Coil 14 34 - -
Cla05g02397 360 Coils Coil 219 239 - -
Cla05g02397 360 ProSitePatterns 14-3-3 proteins signature 2. 241 260 IPR023409 -
Cla05g02397 360 ProSitePatterns 14-3-3 proteins signature 1. 46 56 IPR023409 -
Cla05g02397 360 Gene3D - 1 273 IPR036815 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g02397 Cla-Chr5:35521249 Cla07g00262 Cla-Chr7:2904787 2.89E-142 dispersed
Cla05g02397 Cla-Chr5:35521249 Cla11g01382 Cla-Chr11:27349996 5.69E-125 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g02397 - K06630 csv:101221275 472.626