Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g02399 ATGAATAAATCTTCCATGGATTTGGTTCAACCTTCCGACCACCTCTGTTATGTCAAATGCAACTTCTGTAACACTCTCCTTGCGGTTGGGATTCCATGCAGACGTTTATTGGATACGGTGACAGTGAAATGTGGTCATTGTAGTAATCTCTCATTTTTAAGCACAAGACCTCCTTTACAGGGCCAATGCATTGATCATCCTCTAAGTTTTCAGTCTCAGGTTGGGTTCTCCAATGATATACGAAAGGGTGCGTCCACGTCGTCCACTTCCACGTCCTCTTCAATGCCAAATGAGTCCCCTTCTCCAAATTTTGTTGTTAAACCCCCTGAGAAGAAACACAGACTTCCATCTGCTTACAATCGTTTCATGAAAGAGGAGATTCAACGTATCAAAGCTGCCAACCCAGAAATACCTCATCGAGAAGCATTCAGTGCAGCAGCAAAAAACTGGGCAAGGTACATCCCAAATTCAGCTGCTGGGTCGGTTTCTGGAACTCATCACAACAACGAGTTCAAATTCTACTACTATTGTAAATTTGAGTGTACAATTTTAACTAAGAATTTGATTTTGCGAATGGTTTTCAATTTTGCAGGAATGAAAGGGTTCAGGGCAGCGGAAGAATTGAACAAATCAAATGGCTGTGTAGGCGGCTAG 654 42.35 MNKSSMDLVQPSDHLCYVKCNFCNTLLAVGIPCRRLLDTVTVKCGHCSNLSFLSTRPPLQGQCIDHPLSFQSQVGFSNDIRKGASTSSTSTSSSMPNESPSPNFVVKPPEKKHRLPSAYNRFMKEEIQRIKAANPEIPHREAFSAAAKNWARYIPNSAAGSVSGTHHNNEFKFYYYCKFECTILTKNLILRMVFNFAGMKGFRAAEELNKSNGCVGG 217
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 35548815 35550334 + ClCG05G023780.2 Cla05g02399 273889

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g02399 217 CDD HMGB-UBF_HMG-box 114 150 - -
Cla05g02399 217 MobiDBLite consensus disorder prediction 81 101 - -
Cla05g02399 217 PANTHER PROTEIN YABBY 6-RELATED 4 167 IPR006780 GO:0007275
Cla05g02399 217 SUPERFAMILY HMG-box 99 151 IPR036910 -
Cla05g02399 217 MobiDBLite consensus disorder prediction 81 112 - -
Cla05g02399 217 Pfam YABBY protein 11 153 IPR006780 GO:0007275
Cla05g02399 217 PANTHER PROTEIN CRABS CLAW 4 167 - -
Cla05g02399 217 Gene3D High mobility group box domain 102 156 IPR036910 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g02399 K25796 YAB; plant-specific transcription factor YABBY family protein - csv:101219863 296.975
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g02399 Cla-Chr5:35548815 Cla06g01123 Cla-Chr6:24074518 2.11E-31 dispersed
Cla05g02399 Cla-Chr5:35548815 Cla11g00285 Cla-Chr11:3276437 2.29E-40 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cla05g02399 . 12 167 C2C2-YABBY Transcription Factor Family AT1G69180 57.1 9.9e-46 180.3
Cla01g00368 CCT 82 242 C2C2-YABBY Transcription Factor Family AT2G45190 58.6 2.1e-42 169.1
Cla02g02184 . 1 198 C2C2-YABBY Transcription Factor Family AT1G08465 58.0 1.4e-50 196.4
Cla01g00368 CCT 38 232 C2C2-YABBY Transcription Factor Family AT1G08465 51.8 1.6e-43 172.9
Cla11g00285 . 5 180 C2C2-YABBY Transcription Factor Family AT1G08465 50.3 7.5e-41 164.1
Cla01g00368 CCT 49 241 C2C2-YABBY Transcription Factor Family AT4G00180 55.5 4.5e-50 194.9
Cla05g02553 . 1 164 C2C2-YABBY Transcription Factor Family AT1G23420 53.8 2.0e-39 159.8
Cla11g00285 . 8 171 C2C2-YABBY Transcription Factor Family AT2G26580 71.3 4.4e-61 231.1
Cla06g01123 . 8 222 C2C2-YABBY Transcription Factor Family AT2G26580 55.8 4.3e-56 214.5
Cla02g02184 . 1 198 C2C2-YABBY Transcription Factor Family AT2G26580 52.0 1.3e-44 176.4
Cla01g00368 CCT 40 204 C2C2-YABBY Transcription Factor Family AT2G26580 54.4 6.4e-44 174.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004928 1 2 1 1 1 2 1 2 2 0 1 2 2 1 1 2 2 2 2 2 1 1 1 1 1 1 1 1 1 1 40
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61169 PF04690 YABBY 1.20E-54 CL0114 Cla TF