Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g02399 ATGAATAAATCTTCCATGGATTTGGTTCAACCTTCCGACCACCTCTGTTATGTCAAATGCAACTTCTGTAACACTCTCCTTGCGGTTGGGATTCCATGCAGACGTTTATTGGATACGGTGACAGTGAAATGTGGTCATTGTAGTAATCTCTCATTTTTAAGCACAAGACCTCCTTTACAGGGCCAATGCATTGATCATCCTCTAAGTTTTCAGTCTCAGGTTGGGTTCTCCAATGATATACGAAAGGGTGCGTCCACGTCGTCCACTTCCACGTCCTCTTCAATGCCAAATGAGTCCCCTTCTCCAAATTTTGTTGTTAAACCCCCTGAGAAGAAACACAGACTTCCATCTGCTTACAATCGTTTCATGAAAGAGGAGATTCAACGTATCAAAGCTGCCAACCCAGAAATACCTCATCGAGAAGCATTCAGTGCAGCAGCAAAAAACTGGGCAAGGTACATCCCAAATTCAGCTGCTGGGTCGGTTTCTGGAACTCATCACAACAACGAGTTCAAATTCTACTACTATTGTAAATTTGAGTGTACAATTTTAACTAAGAATTTGATTTTGCGAATGGTTTTCAATTTTGCAGGAATGAAAGGGTTCAGGGCAGCGGAAGAATTGAACAAATCAAATGGCTGTGTAGGCGGCTAG 654 42.35 MNKSSMDLVQPSDHLCYVKCNFCNTLLAVGIPCRRLLDTVTVKCGHCSNLSFLSTRPPLQGQCIDHPLSFQSQVGFSNDIRKGASTSSTSTSSSMPNESPSPNFVVKPPEKKHRLPSAYNRFMKEEIQRIKAANPEIPHREAFSAAAKNWARYIPNSAAGSVSGTHHNNEFKFYYYCKFECTILTKNLILRMVFNFAGMKGFRAAEELNKSNGCVGG 217
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 35548815 35550334 + ClCG05G023780.2 Cla05g02399 273889
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g02399 217 CDD HMGB-UBF_HMG-box 114 150 - -
Cla05g02399 217 MobiDBLite consensus disorder prediction 81 101 - -
Cla05g02399 217 PANTHER PROTEIN YABBY 6-RELATED 4 167 IPR006780 GO:0007275
Cla05g02399 217 SUPERFAMILY HMG-box 99 151 IPR036910 -
Cla05g02399 217 MobiDBLite consensus disorder prediction 81 112 - -
Cla05g02399 217 Pfam YABBY protein 11 153 IPR006780 GO:0007275
Cla05g02399 217 PANTHER PROTEIN CRABS CLAW 4 167 - -
Cla05g02399 217 Gene3D High mobility group box domain 102 156 IPR036910 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g02399 Cla-Chr5:35548815 Cla06g01123 Cla-Chr6:24074518 2.11E-31 dispersed
Cla05g02399 Cla-Chr5:35548815 Cla11g00285 Cla-Chr11:3276437 2.29E-40 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61169 PF04690 YABBY 1.20E-54 CL0114 Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g02399 K25796 - csv:101219863 296.975