Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cla05g02400 | ATGGAGAATTCTAAAGAAAACAAGTTTGTGTGCAACTTTTGCCACAAGAGCTTCACGTGTGGGAAGTCTTTGGGAGGTCATATCAGAATTCACAAGAATGAGAAATCATCCCGAGTTGCAGAGAAGCAAAGGGAAAGAAGCTTGAAGTTTCAAGTTCCGACAGAGAGGAGAAGAAGCAAGAGAGATTTAGAATCGGAGGTTGGTAATGGGAATTCAGGCTATGGCTTGAGAGAGAACCCCAAAATAACACGGAGGTTTGCTGATTCGGGATACAGTTCAAGGCAGGAGAAGTTTTGTAGAGAATGTGGACAAGGGTTTCAGTCCTCAGAAGCTTTGAGTTGGCACTTGGCTTGTCACTCTGGAAACGAAAGGGAAAACAGAAGGCTTCAATACAATTATGGGATCACACATCAGAAGCGGGAGTTTATAGAAGAAAATCAATCGGACATTCCTGAGAGAGTACGAGAGGCGGCTATGTGCTTGATGATGATGTCTAAAGCTCCGAGATTTTCAGGATTGGAAGGTCTGAATTCGGCTGCGGAATCCTCTGATAGTAAATCATCTTCTCGTCATTTTAGGGAAAGTGACACATCTGCTTCTTACTCTAATGGAGGACTAGAAATGAGAGAAGTCACAGGTAGGATCAACAAGTTGGAAGTTTCTGAATTCGACGGTGAGAATTCCGACTCTGATAATTTCAGGAAAGAAATCTGCAAGAAGGTTAAATTGAAACTGTCTGTTCATCGGGCTCTTTTGGATGAAGAATATAAGAAACCAGATTTCAAATTTGGAGTCAGGGTAGGAAGAGCAAGTGCAGATATTCTAAAGAATTCGATGAAAACTAAGAAAAATGATGATCAAGTGCATGCATCTTACAAGTACGAGCTGAGAAAGAGGTTGAAAAATGGATCATACAGTCCTGATCTCTGGGAGGGATCAAGCAAGAAGATGCCTAGCGAGAACTTCCGTTCTCATGACAGAGAAACCTATACAAGAATGAGCAATGGCTGCGAGTGGACGCATCAGTCAGGTGAAAACAGCGTAAATACCACTACCAATTCCATCTCTATACCATCTAGGGAGTTAATTGAGTCAAGCAATGGCAAAAACAAGGGTCACCAGGATACTTCTGGAAATGAAGAGAAGAAATTAGGGCCCAAGAGAAAACACAAGTGCCCAATTTGCTTCAAAGCCTTTAAATCAGGCCAGGCATTGGGGGGTCATAAGAGGTCTCATGTGGTCGGAAGTTTAGAGGATGCGTCTATAGTGACAAGGCAAGAGTCCAATGGGATAACTGGTCTAATTGATCTAAATGTTCCTGCTCCTATGGAAGAAGAGGAAAGTGGGAGATGA | 1353 | 42.57 | MENSKENKFVCNFCHKSFTCGKSLGGHIRIHKNEKSSRVAEKQRERSLKFQVPTERRRSKRDLESEVGNGNSGYGLRENPKITRRFADSGYSSRQEKFCRECGQGFQSSEALSWHLACHSGNERENRRLQYNYGITHQKREFIEENQSDIPERVREAAMCLMMMSKAPRFSGLEGLNSAAESSDSKSSSRHFRESDTSASYSNGGLEMREVTGRINKLEVSEFDGENSDSDNFRKEICKKVKLKLSVHRALLDEEYKKPDFKFGVRVGRASADILKNSMKTKKNDDQVHASYKYELRKRLKNGSYSPDLWEGSSKKMPSENFRSHDRETYTRMSNGCEWTHQSGENSVNTTTNSISIPSRELIESSNGKNKGHQDTSGNEEKKLGPKRKHKCPICFKAFKSGQALGGHKRSHVVGSLEDASIVTRQESNGITGLIDLNVPAPMEEEESGR | 450 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 35558176 | 35559528 | + | ClCG05G023790.1 | Cla05g02400 | 273890 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cla05g02400 | 450 | SMART | c2h2final6 | 97 | 119 | IPR013087 | - | |
| Cla05g02400 | 450 | SMART | c2h2final6 | 9 | 31 | IPR013087 | - | |
| Cla05g02400 | 450 | SMART | c2h2final6 | 390 | 412 | IPR013087 | - | |
| Cla05g02400 | 450 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 97 | 124 | IPR013087 | - | |
| Cla05g02400 | 450 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 9 | 36 | IPR013087 | - | |
| Cla05g02400 | 450 | MobiDBLite | consensus disorder prediction | 34 | 78 | - | - | |
| Cla05g02400 | 450 | MobiDBLite | consensus disorder prediction | 340 | 387 | - | - | |
| Cla05g02400 | 450 | MobiDBLite | consensus disorder prediction | 175 | 206 | - | - | |
| Cla05g02400 | 450 | PANTHER | C2H2-LIKE ZINC FINGER PROTEIN | 1 | 447 | - | - | |
| Cla05g02400 | 450 | MobiDBLite | consensus disorder prediction | 34 | 65 | - | - | |
| Cla05g02400 | 450 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 99 | 119 | IPR013087 | - | |
| Cla05g02400 | 450 | SUPERFAMILY | beta-beta-alpha zinc fingers | 98 | 412 | IPR036236 | - | |
| Cla05g02400 | 450 | MobiDBLite | consensus disorder prediction | 340 | 373 | - | - | |
| Cla05g02400 | 450 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 11 | 31 | IPR013087 | - | |
| Cla05g02400 | 450 | Gene3D | Classic Zinc Finger | 1 | 69 | - | - | |
| Cla05g02400 | 450 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 392 | 412 | IPR013087 | - | |
| Cla05g02400 | 450 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 390 | 412 | IPR013087 | - | |
| Cla05g02400 | 450 | PANTHER | C2H2-LIKE ZINC FINGER PROTEIN | 1 | 447 | - | - | |
| Cla05g02400 | 450 | SUPERFAMILY | beta-beta-alpha zinc fingers | 5 | 36 | IPR036236 | - | |
| Cla05g02400 | 450 | Pfam | C2H2-type zinc finger | 390 | 412 | - | - | |
| Cla05g02400 | 450 | Pfam | C2H2-type zinc finger | 9 | 31 | - | - | |
| Cla05g02400 | 450 | Pfam | C2H2-type zinc finger | 99 | 119 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cla05g02400 | Cla-Chr5:35558176 | Cla05g00026 | Cla-Chr5:379507 | 2.19E-13 | dispersed | |
| Cla04g01167 | Cla-Chr4:26888562 | Cla05g02400 | Cla-Chr5:35558176 | 3.37E-12 | wgd | |
| Cla05g02400 | Cla-Chr5:35558176 | Cla06g01555 | Cla-Chr6:29128028 | 8.94E-30 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 61170 | PF13912 | zf-C2H2_6 | 6.20E-09 | CL0361 | Cla | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cla05g02400 | - | - | csv:101221515 | 776.163 |