Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g02401 ATGACACCACTAATGGCAGCATTGCGATTACCATCGCCCTGTGTTAATTCTAATAATCCACAATCCCCAAAACTCAAATTCCCATCCACCTTCGCTTCAGAGTCTAGTTTCGGGACCAATTGGACGAGGCTTCTGTTGTTCAGAGCTTCGTTCTCGAGTTCTTCAAGAAGGAAGCTGTGCATTAGAAACGTAGCCAGCGATCGACAGAAACAACTGAAGGAGCCGGTCAACGGAGAAGACGACTTCGATAGCTTTCTTCCAGATTCGGCGTCCATTGCTGCAAGTATTAAGTACCATTCGGAATTCACGCCTTCTTTCTCACCGGAGGGCTTTGGGCTTTCTAAGGCATACTATGCAACTGCTGAAAGTGTTCGTGATATGCTTATCATCAACTGGAATGCTACGTATGAGTACTATGAAAAGATGAATGTGAAGCAGGCCTACTATCTGTCGATGGAGTTTTTACAGGGTAGGGCATTGCTAAATGCAATTGGAAATCTGGAACTATCAGGAATTTATGCAGATGCTTTAAGAGTGTTAGGATGTAATCTCGAGGAGGTAGCACGGCAGGAATCGGATGCTGCACTAGGAAATGGAGGATTAGGGCGGCTTGCTTCCTGCTTTCTGGACTCCCTGGCAACACTAAACTATCCAGCATGGGGATATGGACTGAGATACAAGTATGGTTTGTTCAAACAGCTTATTACAAAAGATGGACAGGAGGAAGTGGCCGAAAATTGGCTAGAGATGGGCAATCCCTGGGAAATTGCAAGACACGACATCTCCTATCCTGTGAAATTCTATGGTGAAGTCATTTCAGGCGCAGATGGAAGCAAGCAATGGGTTGGAGGAGAAAATATCACTGCTGTTGCCTATGATGTCCCAATACCAGGTTATAAAACTAAAACCACGATAAACCTCCGTTTGTGGTCCACAAAGGTTGCTCCCGAACAATTTAATTTGAGTTCTTTCAATGTTGGAGATCATGCCAATGCATATGCAGCCATAAAGAAAGCTGAAAAGATCTGTTACGTACTGTACCCTGGAGACGAGTCACTGGAGGGAAAGACTCTTAGACTGAAACAGCAATACACATTGTGCTCTGCTTCCCTTCAAGATATTGTCGCACGTTTTGAGAGGAGATCCGGGGAGACTGTGGACTGGGAAAATTTTCCAGAAAAGGTTGCTGTGCAGATGAATGATACCCATCCTACACTTTGTATCCCTGAGCTGATAAGAATATTGATGGATGTGAAAGGGTTAACCTGGAAAGAAGCTTGGGACATCACTCGTAGAACTGTCGCCTACACAAATCATACAGTTCTGCCGGAGGCGCTGGAAAAATGGGGTTTCCCCCTCATGCAGGAACTACTTCCTCGACATGTTCAGATAATTGAAATGATTGACGAGGAGCTTATCCATTCCATCATTGCTAAGTACGGTACAAAAGATCTTGAGTTGTTGCAGCAAAAGCTGAAGCAAATGAGAGTTCTAGAAAATTTTGAATTACCAGACTCGGTAATGGAACTTCTAGTAAATTCAGCGGAGTCTGCGGTAGCAGTTGATCTCGTTGAGGAAGCTGAAATTCTGGATGAGGAATCATTACCTGGTAAAGAAGTAGACGAGAATGAAGACAAAAGTATTGCGAAGAAAATAAATATTTCATTTAAAGTTGATCCAAAGCATCCAAAGATGATTCGCATGGCTAATTTGTCTGTTGTTGGTGGATATGCTGTAAATGGTGTTGCTGAAATTCATAGTGAAATTGTTAGAACTGAAGTTTTTAGCGACTTTTATGAGAATTTCACCTCCGCAATTTTGATACCATCATGCCACATGAAACTGAGTTTCTCCTCCATTTTAAACTCTACTCACTTCGCATATATCAACTACTGTCAGTTGTGGCCTAAGAAATTTCAAAACAAAACGAACGGAGTGACACCAAGAAGATGGCTCCGTTTTTGCAATCCGGACCTGAGTAAAATCATCACAAAGTGGACTGGAACAGAGCACTGGGTGACAGATACTGAAAGACTGGCAATACTCCGAGAGTTCGCTGATAACGAGGATCTCCAGTCCATGTGGGAGGAAGCTAAAAGAATAAACAAATTGAAAGTTGTCTCTTTTCTTAAAGAAAAAACTGGCTATTTAGTCAGCCCTGATGCAATGTTTGACGTACAGGTAAAACGCATCCATGAATACAAGCGGCAGTTGTTGAACATCCTGGGGATCGTCTATCGTTATAAACAAATGAAAGAAATGACTCAAGAGGAAAGAGAAGCCAAGTTTGTTCCTCGAGTTTGTATATTTGGCGGGAAAGCATTTGCTACATACGTCCAGGCCAAAAGGATTGTGAAATTCATTGTTGATGTTGGAGCTACCGTCAATAACGATCCTGATATAGGAGATCTTTTGAAGACAAATATTATCATATATTATTCTCTTGCCTGGGAAGTATTTGCACCTACAGAAACCAACATTAGCATGGCACTTCGGGCTTTAAAACTTGTAGTCTTTGTTCCAGATTACAATGTGAGTGTAGCAGAAGTGCTCATTCCTGGCAGTGATCTTTCCCAGCATATCAGCACGGCTGGAATGGAGGCCAGTGGTACCAGCAACATGAAGTTTGCAATGAATGGCTGTGTACTAATTGGAACATTAGATGGGGCAAATGTAGAGATAAGAGAAGAAGTTGGAGAAGACAACTTTTTCCTCTTTGGTGCAAGGGCTCATGAAATTGCTGGCCTAAGAAAAGAAAGAGCTGAAGGCAAGATCATTGGAAAGTGTTATGCTTATTTCTCTCTTTTATTCCTCCTTTCTTGTGACTTTTTGCCCTTCTTTTTACACCAAGTTATGAAAAGAATGTTACAAGAGTTATTGCGTCAATTTGTTCCTGACCCACGGTTTGAGGAAGTGAAGGCCTTCGTAAGAAGTGGGGTTTTTGGTTCCAATAACTATGAAGAACTCATGGGATCTTTAGAAGGAAATGAAGGTTATGGTCGGGCAGACTATTTCCTTGTTGGCAAGGACTTCCCTAGTTACATAGAGTGCCAAGACAGGGTTGATGAGGCCTATCGAGATCAAAAGAGATGGACCAAGATGTCGATCTTAAACACAGCTGGTTCATTCAAGTTCAGCAGTGACAGAACCATTCATGAGTATGCAAGAGACATATGGAAGATTTCTCCACTATTGCTATCTTAA 3204 42.2 MTPLMAALRLPSPCVNSNNPQSPKLKFPSTFASESSFGTNWTRLLLFRASFSSSSRRKLCIRNVASDRQKQLKEPVNGEDDFDSFLPDSASIAASIKYHSEFTPSFSPEGFGLSKAYYATAESVRDMLIINWNATYEYYEKMNVKQAYYLSMEFLQGRALLNAIGNLELSGIYADALRVLGCNLEEVARQESDAALGNGGLGRLASCFLDSLATLNYPAWGYGLRYKYGLFKQLITKDGQEEVAENWLEMGNPWEIARHDISYPVKFYGEVISGADGSKQWVGGENITAVAYDVPIPGYKTKTTINLRLWSTKVAPEQFNLSSFNVGDHANAYAAIKKAEKICYVLYPGDESLEGKTLRLKQQYTLCSASLQDIVARFERRSGETVDWENFPEKVAVQMNDTHPTLCIPELIRILMDVKGLTWKEAWDITRRTVAYTNHTVLPEALEKWGFPLMQELLPRHVQIIEMIDEELIHSIIAKYGTKDLELLQQKLKQMRVLENFELPDSVMELLVNSAESAVAVDLVEEAEILDEESLPGKEVDENEDKSIAKKINISFKVDPKHPKMIRMANLSVVGGYAVNGVAEIHSEIVRTEVFSDFYENFTSAILIPSCHMKLSFSSILNSTHFAYINYCQLWPKKFQNKTNGVTPRRWLRFCNPDLSKIITKWTGTEHWVTDTERLAILREFADNEDLQSMWEEAKRINKLKVVSFLKEKTGYLVSPDAMFDVQVKRIHEYKRQLLNILGIVYRYKQMKEMTQEEREAKFVPRVCIFGGKAFATYVQAKRIVKFIVDVGATVNNDPDIGDLLKTNIIIYYSLAWEVFAPTETNISMALRALKLVVFVPDYNVSVAEVLIPGSDLSQHISTAGMEASGTSNMKFAMNGCVLIGTLDGANVEIREEVGEDNFFLFGARAHEIAGLRKERAEGKIIGKCYAYFSLLFLLSCDFLPFFLHQVMKRMLQELLRQFVPDPRFEEVKAFVRSGVFGSNNYEELMGSLEGNEGYGRADYFLVGKDFPSYIECQDRVDEAYRDQKRWTKMSILNTAGSFKFSSDRTIHEYARDIWKISPLLLS 1067
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 35560332 35566533 - ClCG05G023800.2 Cla05g02401 273891
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g02401 1067 PANTHER GLYCOGEN PHOSPHORYLASE 834 927 IPR000811 GO:0005975|GO:0008184
Cla05g02401 1067 PANTHER GLYCOGEN PHOSPHORYLASE 629 816 IPR000811 GO:0005975|GO:0008184
Cla05g02401 1067 PANTHER GLYCOGEN PHOSPHORYLASE 962 1066 IPR000811 GO:0005975|GO:0008184
Cla05g02401 1067 PANTHER ALPHA-1,4 GLUCAN PHOSPHORYLASE L-2 ISOZYME, CHLOROPLASTIC/AMYLOPLASTIC 629 816 - -
Cla05g02401 1067 PANTHER ALPHA-1,4 GLUCAN PHOSPHORYLASE L-2 ISOZYME, CHLOROPLASTIC/AMYLOPLASTIC 35 601 - -
Cla05g02401 1067 PANTHER ALPHA-1,4 GLUCAN PHOSPHORYLASE L-2 ISOZYME, CHLOROPLASTIC/AMYLOPLASTIC 962 1066 - -
Cla05g02401 1067 ProSitePatterns Phosphorylase pyridoxal-phosphate attachment site. 867 879 IPR035090 -
Cla05g02401 1067 PANTHER GLYCOGEN PHOSPHORYLASE 35 601 IPR000811 GO:0005975|GO:0008184
Cla05g02401 1067 Gene3D Glycogen Phosphorylase B; 618 645 - -
Cla05g02401 1067 Gene3D Glycogen Phosphorylase B; 1047 1061 - -
Cla05g02401 1067 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 88 603 - -
Cla05g02401 1067 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 630 1063 - -
Cla05g02401 1067 PANTHER ALPHA-1,4 GLUCAN PHOSPHORYLASE L-2 ISOZYME, CHLOROPLASTIC/AMYLOPLASTIC 834 927 - -
Cla05g02401 1067 Pfam Carbohydrate phosphorylase 618 815 IPR000811 GO:0005975|GO:0008184
Cla05g02401 1067 Pfam Carbohydrate phosphorylase 837 921 IPR000811 GO:0005975|GO:0008184
Cla05g02401 1067 Pfam Carbohydrate phosphorylase 179 603 IPR000811 GO:0005975|GO:0008184
Cla05g02401 1067 Pfam Carbohydrate phosphorylase 963 1061 IPR000811 GO:0005975|GO:0008184
Cla05g02401 1067 CDD GT35_Glycogen_Phosphorylase 95 1061 - -
Cla05g02401 1067 Gene3D Glycogen Phosphorylase B; 87 609 - -
Cla05g02401 1067 Gene3D Glycogen Phosphorylase B; 963 1046 - -
Cla05g02401 1067 Gene3D Glycogen Phosphorylase B; 837 922 - -
Cla05g02401 1067 Gene3D Glycogen Phosphorylase B; 646 815 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g01929 Cla-Chr2:34437231 Cla05g02401 Cla-Chr5:35560332 0 dispersed
Cla03g00750 Cla-Chr3:9134962 Cla05g02401 Cla-Chr5:35560332 0 dispersed
Cla05g02401 Cla-Chr5:35560332 Cla07g00698 Cla-Chr7:18146082 0 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g02401 K00688 - csv:101221746 1704.49