Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g02405 ATGGCAACAATGGCCTCCAAAGTCTTGTTCCTCGTTCTAATTTGCTTCTTTTCATTTTCATCTTCCATTTTAGCAGAATTCGTTAAAGTTTCAGTGAAAGGAGTGACCACCATTGCTGAAACTGACAACGATTTCATTTGTGCTACTATAGATTGGTGGCCTTCTAATAAATGCGATTATGGCCAATGCCCATGGGGAAAAGCTGGCGTTCCTAATTTGGATCTTCAGAACGTTATCTTAACCAAAGCAATCAAGGAGTTCAATCCTTTGAGAATCCGAGTTGGAGGATCACTTCAAGATCAAATCATTTACAGAGTTGGAAACTCGGTGAAGAAGTGTCCTCAAATGAAGAAACAGAGTGATGGTTTGTTTGGATTCAGCAAAGGTTGTTTTACCATGGAAAGATGGGATGATTTTAATGAGCTATTCAACAAAACATCAGCTCGGGTTACGTTTGGTTTGAATGCTCTGATGGGTAAAACACCAGCCAATGATGGAAGTATCAACTGGGTTGGTGATTGGGATCCTCGTAATGCTCGAGATTTCATCCGATACACTGCCTCTAAAGGATACAAAATCGATTCTTATGAACTGGGAAATGAACTTTGTGCGAGCGGAGTTTCGGCAAGGCTTGAGCCGGATCAATATGGTAAAGATCTGACTCTAATGAGAAAAGTAGTTGAAGAGGTTTATCATGATGCCAACAACAGACCCAAAATTCTTGGACCCGCGGGTTTCTTTGACAAAGAATGGTTCAAAACTTTCCTTCAAAACACTGCCCCAAATGTTGTGGATGGAGTCACTCACCATATTTACAATCTTGGAGCAGGTGTTGATCCTACTCTTATAAATAAGGTACAAGACCCTTATGTTTTGGACCAAATTGCTCAAACTTTTAAGGAAGCTATGGAAGTTTCACAGAGCTTTGGGCCATGGTCTAAGCCTTGGGTTGGTGAATCTGGTGGTGCTTATAACAGTGGTGGCAAAACTGTTTCTCATACTTTTGCCAATGGATTCTGGTATTTGGATCAACTGGGGATGACTGCCACATTCAATCATCAGGTTTATTGCAGACAAGCCTTGATTGGTGGAAACTATGCTTTGCTTAATACCACTAGTTTCATCCCTAACCCTGATTATTATAGCGCTCTGCTATGGCACAGATTAATGGGAAAGAAGGTCCTCTCAGCATCCCACGACAGCTCTCCATACCTTCGTGTTTATTCTCACTGCACCAAAAACAACGAAGGCGTTACAGTGCTTCTAATCAACATGTCAAATTCGACCACATTCGATGTAAATATTGTAAACGACAGAAATGTTTATCCAAACTTGATGATAGGCAGCAAATTAAAGGCAAGAGAAGAGTACCATTTAACTCCCAAAGACGGCAATATTCAAAGCGACGTCATGCTTTTGAATGGAACTCCTCTTCAACTTACTCCAACCAGCTTGGACATTCCCGACATGTCGCCCAAGCTCGTCGATCCCACTTCCGCTGTGTCAGTTGCCCCTGATTCTTACGTCTTTGTCTCCATCAAAGACTTCAAAGCTCCTGCTTGCGCCTAA 1569 41.87 MATMASKVLFLVLICFFSFSSSILAEFVKVSVKGVTTIAETDNDFICATIDWWPSNKCDYGQCPWGKAGVPNLDLQNVILTKAIKEFNPLRIRVGGSLQDQIIYRVGNSVKKCPQMKKQSDGLFGFSKGCFTMERWDDFNELFNKTSARVTFGLNALMGKTPANDGSINWVGDWDPRNARDFIRYTASKGYKIDSYELGNELCASGVSARLEPDQYGKDLTLMRKVVEEVYHDANNRPKILGPAGFFDKEWFKTFLQNTAPNVVDGVTHHIYNLGAGVDPTLINKVQDPYVLDQIAQTFKEAMEVSQSFGPWSKPWVGESGGAYNSGGKTVSHTFANGFWYLDQLGMTATFNHQVYCRQALIGGNYALLNTTSFIPNPDYYSALLWHRLMGKKVLSASHDSSPYLRVYSHCTKNNEGVTVLLINMSNSTTFDVNIVNDRNVYPNLMIGSKLKAREEYHLTPKDGNIQSDVMLLNGTPLQLTPTSLDIPDMSPKLVDPTSAVSVAPDSYVFVSIKDFKAPACA 522
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 35582311 35585532 + ClCG05G023840.1 Cla05g02405 273895
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g02405 522 Pfam Glycosyl hydrolase family 79, N-terminal domain 28 346 IPR005199 GO:0016020|GO:0016798
Cla05g02405 522 SUPERFAMILY (Trans)glycosidases 41 390 IPR017853 -
Cla05g02405 522 Gene3D Glycosidases 67 388 - -
Cla05g02405 522 PANTHER HEPARANASE-RELATED 22 522 - -
Cla05g02405 522 PANTHER OS07G0598400 PROTEIN 22 522 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g02405 Cla-Chr5:35582311 Cla07g00845 Cla-Chr7:23521611 5.98E-161 dispersed
Cla11g00312 Cla-Chr11:3597737 Cla05g02405 Cla-Chr5:35582311 4.62E-168 transposed
Cla04g01174 Cla-Chr4:26928513 Cla05g02405 Cla-Chr5:35582311 0 wgd
Cla05g02405 Cla-Chr5:35582311 Cla06g01560 Cla-Chr6:29153898 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g02405 K07964 - csv:101214214 927.161