Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cla05g02409 | ATGAGAAGCAACAGTGTTAGGGAGAACAGGAAAAAAAAAAAAAGGTTTCATCCTTGTATTGAAGGAATGGGAACAAAGGTGCAGTATGAAAGTTATTTGCCAGGATATCACTCAATGAGGGATCTAAATGAAGATTCTCATGGTTGTAGTTGGCCTTTATATTACAGTGAAAAAGCATGTCAGAGTGGTCAATACTATAATGGAATTCTGCCAAGAGCTACCTCCGATGCATATCTAGGTTGTGATAGAGATGCTGTGAAGAGGACAATGCTTGAGCATGAAGCCATATTCAAGAACCAGGTTCGTGAGCTGCATCGGTTATATATAAAACAGAGAGAGTTAATGAATGATATTAAAAGATCAGAGCACAGACACCCGATACCGGTGGACATATCATTCTCATCTAGTCCTCTAGCATCTCAAAGTACTCCTGATGGTGCAAGGAAATGGCATCTCCCAAGCTTTCCTCTTGCAATTTCTTCCAGTGGACCATCTGTACCTGGTGTTGAAGATGTAAAATCATCTTTAAGTTCTTTGAAAGAAAACAATAGAAGTGATGGCCTCTTACCATCCCAAAATGGAACCAGTTCAAAGGACTGTGAGGTACTAGAATCTAGACCCTCAAAGTCTAGGAGGAAAACCTTTGATCTTCAACTTCCAGCAGACGAGTACATTGATAGCGAAGAGGGGGAGGTATTTCAAGATGAAAAAGTGCCTCCCACGTTGGGTTGCCATTCAAATGGTAACAAGAAATTTGAGACTCAGAGTTGTGTGACGGCAAATTTGAATGTGAATCCTAGTGAAAAAAGTGGTGGCCAAAGTGCTGCTTTGAGAACTGACTCACATTTATGGAACAGACATGGTTTGGCTGACTTGAATGAGCCTGTTCAGGTCGAGGAGGCAAATGGGTCCAATTTTTTTGATCTTCCTAATGCTCGTGACTCCAGCAATGGGGAGACTCAAGGCCCCATTGTATCGTCTACGAAGCAAGAAATTTTTCTGAGCTCGAATATTAAAGGTGGACATGCAACAAATAGGAATTCGTATATTGAGAATGGGAATAGAAGAGAGGCATTTCCTAACATCTTTGAAGCAGGACGTAGTAAGGAAAGTGAGAAATCTTTTACTCATGGTCAGATGGAAAAATTCCATTTATCTTCTAATCCTATGCAAGTTCCACTTAACAAGTTTCATGAACTTCCAGTTTTCTATCTCAATGATAAAAGCAAGGTTCAACAAGATTTGGACAGGCCAGTTAGTGATTTGCAATTATCCAAAAGAAGTTATGAAATGTCCAATACTGGGGATCCTGGTTATCTTTTAGCTTCTCAGACATCTCGTACATATCAAATTGCTCCTTCTTTGGACGTGGGCAAGTCTTGGGCTCACTCCAGTTCATCTTGGGAAAAGTCAAATGGCAACAGCTCCCAAAAGATGGCATCAGGTCATACACAGCCGTGTTTCAAATCGTCTGCTGCTGTTCACAAGAGTTTTCGTTCATCAGCTCAGAACAATGGAATTTTTGGAGATAGATGGCATTTGAGTAGTGACTCTAGATCAAACCCTGAGTCTGGTTGTGAAACTCCTTACCAGAATGGATTCTATTTTGGGTCTACGTCTGGTTCCAATGGGGGAATTCTCTCCTCTAGCGTAAGGCATGACCATGGGGCAAACTACTACAAGGGCTCCGGTTGTATTGGCACGAATTCACCAAAAGACATTAACTTGAATGTAGTGCTCTCAAAAAGCTTATCAAATGAGGCAGGTCAACAACCAAACTACCGGACCAGAGAGGCAGAACAAAACAATGAGGACCATCATAATGTATTACCATGGACAAGGGCTGTACCTGCTAGTAAGAATGAAACTATCAATTCAAGAAGATTCTCTATGACTGCAGAGCTTAATTTTGTTCTCTCACCGAAGAAACAATTTTCTGACAGAAACGAAACTGAAAATGGCAGTAAAGTTATATGTTATCCAAACATCGAGTCTAATTCACATTGTAGTAACATTGAGCCGAGAATGTCTGAACATGGTGAATGCCAGAGTAACCAAAAACTTCTTGGGTTTCCCATTTTTGAAGGGCCACGCATTTCTAAGAATGAGTCATTTTCTCTTACATCCCCATCAGCACCTCCTGCTAATCCATCTGAGAATGAAGTGGAAGATAACCGGAAAACTAGAGTACTTGATATCAATTTGCCTTGTGATCCTTCAGTTTTTGAGTCAGAAAACGTTACTACCGGAGCTCTGGCTGTAGAGAATGGAAAGGACACAAAGATCTCTACTGTGAGAGTTGATATTGATTTGAACTCGTGTGTCAGCGATGATGAACCATCTATGAGACCTCTACCCTTGGCTTCTTCAAGTGGCAAGGAAAAGGTTGTCGTAGAGATAGATTTAGAAGCCCCGGCAATGCCCGAGGCTGAAGATGACATAATTGCAGAAGAAGAATCTTTAGAAAAACAGCATGAACAGCAACCACAATCTCCTCAGCACAAGGCTGTTGATATTCAGGATGATCTTATGGCTTTAGCAGCAGAGGCAATACTTGCCATCTCTTCTTGTGTTCATTCCTGTCATTTGGATGATAGTGTTAGCAATGCGTTGGAAGATTCTTCAAGCGATCCCCTAAATTGGTTTGCTGAGATAGTTTCCACTCACGGAGATGATGTACAGGCCAAGTCTGACATTGTATTGAGATCCAAAGAAGGCAAGGATGCTGAGGAATCCTCTTTGAGAGGGCTTGATTACTTTGAGTACATGACTTTGAGGCTGGCGGAGGTCGGTGAAGAAGACTACATGCCTAAGCCCTTGGTTCCAGAAAATATGGAAATTGAAGATACTGGAACCAATTTGTTGCAAAATCGGCCCCGAAAGGGCCAGACAAGGAGAGGTAGGCAGCGAAGGGACTTCCAGAAGGACATCCTTCCAGGCCTTTCTTCTCTATCAAGGCATGAGGTTACAGAAGATCTTCAGACGTTTGGTGGCCTAATGCGAGCAACGGGCCACTCTTGGCATTCTGGAGTTACAAGGAGGAACTCTACTAGAAATGGTTGTGGAAGAGGAAGACGACGATCTGTGATCAGTCCCCCGCCCCCTGTGCAATCAGCATGTAATCAGCTGATACAGCAACTAAGTAACATTGAAATGGGGCTGGAAGATGGAAGCCTGACTGGTTGGGGCAAGACAACCAGACGGCCCCGTCGGCAAAGATGTCCGGCCGGTAACCCTCCGGCTGTCCCTTTAACTTAA | 3258 | 42.79 | MRSNSVRENRKKKKRFHPCIEGMGTKVQYESYLPGYHSMRDLNEDSHGCSWPLYYSEKACQSGQYYNGILPRATSDAYLGCDRDAVKRTMLEHEAIFKNQVRELHRLYIKQRELMNDIKRSEHRHPIPVDISFSSSPLASQSTPDGARKWHLPSFPLAISSSGPSVPGVEDVKSSLSSLKENNRSDGLLPSQNGTSSKDCEVLESRPSKSRRKTFDLQLPADEYIDSEEGEVFQDEKVPPTLGCHSNGNKKFETQSCVTANLNVNPSEKSGGQSAALRTDSHLWNRHGLADLNEPVQVEEANGSNFFDLPNARDSSNGETQGPIVSSTKQEIFLSSNIKGGHATNRNSYIENGNRREAFPNIFEAGRSKESEKSFTHGQMEKFHLSSNPMQVPLNKFHELPVFYLNDKSKVQQDLDRPVSDLQLSKRSYEMSNTGDPGYLLASQTSRTYQIAPSLDVGKSWAHSSSSWEKSNGNSSQKMASGHTQPCFKSSAAVHKSFRSSAQNNGIFGDRWHLSSDSRSNPESGCETPYQNGFYFGSTSGSNGGILSSSVRHDHGANYYKGSGCIGTNSPKDINLNVVLSKSLSNEAGQQPNYRTREAEQNNEDHHNVLPWTRAVPASKNETINSRRFSMTAELNFVLSPKKQFSDRNETENGSKVICYPNIESNSHCSNIEPRMSEHGECQSNQKLLGFPIFEGPRISKNESFSLTSPSAPPANPSENEVEDNRKTRVLDINLPCDPSVFESENVTTGALAVENGKDTKISTVRVDIDLNSCVSDDEPSMRPLPLASSSGKEKVVVEIDLEAPAMPEAEDDIIAEEESLEKQHEQQPQSPQHKAVDIQDDLMALAAEAILAISSCVHSCHLDDSVSNALEDSSSDPLNWFAEIVSTHGDDVQAKSDIVLRSKEGKDAEESSLRGLDYFEYMTLRLAEVGEEDYMPKPLVPENMEIEDTGTNLLQNRPRKGQTRRGRQRRDFQKDILPGLSSLSRHEVTEDLQTFGGLMRATGHSWHSGVTRRNSTRNGCGRGRRRSVISPPPPVQSACNQLIQQLSNIEMGLEDGSLTGWGKTTRRPRRQRCPAGNPPAVPLT | 1085 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 35597924 | 35601962 | - | ClCG05G023880.2 | Cla05g02409 | 273899 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cla05g02409 | 1085 | PANTHER | - | 23 | 1084 | - | - | |
| Cla05g02409 | 1085 | MobiDBLite | consensus disorder prediction | 161 | 211 | - | - | |
| Cla05g02409 | 1085 | MobiDBLite | consensus disorder prediction | 702 | 725 | - | - | |
| Cla05g02409 | 1085 | MobiDBLite | consensus disorder prediction | 167 | 201 | - | - | |
| Cla05g02409 | 1085 | MobiDBLite | consensus disorder prediction | 1006 | 1036 | - | - | |
| Cla05g02409 | 1085 | PANTHER | TRANSCRIPTION FACTOR, PUTATIVE (DUF863)-RELATED | 23 | 1084 | - | - | |
| Cla05g02409 | 1085 | Pfam | Plant protein of unknown function (DUF863) | 163 | 1075 | IPR008581 | - | |
| Cla05g02409 | 1085 | MobiDBLite | consensus disorder prediction | 1055 | 1085 | - | - | |
| Cla05g02409 | 1085 | MobiDBLite | consensus disorder prediction | 466 | 486 | - | - | |
| Cla05g02409 | 1085 | MobiDBLite | consensus disorder prediction | 702 | 718 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cla05g02409 | Cla-Chr5:35597924 | Cla01g00374 | Cla-Chr1:4132590 | 1.06E-08 | dispersed | |
| Cla06g01343 | Cla-Chr6:26858414 | Cla05g02409 | Cla-Chr5:35597924 | 6.24E-08 | transposed | |
| Cla04g01177 | Cla-Chr4:26959544 | Cla05g02409 | Cla-Chr5:35597924 | 1.10E-22 | wgd | |
| Cla05g02409 | Cla-Chr5:35597924 | Cla08g01028 | Cla-Chr8:23007628 | 0 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cla05g02409 | - | - | bhj:120080916 | 1946.78 |