Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g02414 ATGGGTGACGATGATGAACAGCCGCCGCCGCCGCCGCCGCCGCCGTCCAAATCTTTGAGACCCACTATTAATCTGCCGCCACGGAGTTCTATGGAGTCACTCTTCGGCGGTGGGTCGGGTTTGGGATTTGGGTTTAGCCCAGGACCGATGACCCTCGTCTCGAGCTTCTTCTCTGATTCCGACGACTGCAAGTCTTTTTCTCAGCTCCTCGCCGGAGCTATGGCATCGCCGGTGGCTGCCGTTCCTCCGTCGGCGTCTGAGTTTAAGGCTTCTACCGGTCTGCTCGAATCTCCGGAGCTTTTCTCGCCTGGTCAAGGACCTTTCGGAATGACTCATCAGCAAGCTTTGGCTCAGGTTACTATGCAGGCCGCAGAAGCCTATTCTCATAATCAAATGCAAGCAGCATCTTTTTCTTCATCAGTAGCACCCTCTGCATCCTCCTCACAGCTTTTGACTTCCTTGCCGGTCGAGAAGACTAAAGATCAGCCGATGCAACCTCCGTTACAGGACTCTGCAGTTGCATCCAAGGAGCCATCAGATAACTCTCAATCAGAGCAGAGATTGCAATCTTCTTTGTGTAATGTTGATAGGCCTACTGATGATGGATACAATTGGAGAAAATATGGACAGAAACAAGTGAAGGGCAGTGAATTTCCTCGAAGCTACTACAAGTGCACGCACCCGAATTGTCCTGTCAAGAAAAAGGTTGAACGATCTCTGGAAGGACAAGTCACTGAAATTATCTACAAGGGCGAGCACAACCATAAACGACCTCAACTGAATAAGCGGGCAAAGGATGTCGGAAATTCTAACGGATATTCGAGTATTCATGGAAATCCTGAGCTATCTTCTCAAGTTCAGAGTGGATATTTGAATAAATTGAATGAGCAGACATCTGTGTCTTCCACTGCAAAGAAGGATCAAGAATTGAGTCATGTTACACACGAGCAGTTGTCGGGTACTAGTGATGGTGAGGGAGGGAGTGAGATAGAAACTGGAGTGAATCGAAAAGATGAAGACGAACCTGATGCCAAGAGACGTGTTCTACCTCTATTATGCAGGAACACTGAGGTTAGAATTTCTGAGCCAGCATCTTCTCATAGAACTCTCACAGAATCCAGAATCATTGTGCAGACTACAAGTGAAGTCGATCTATTAGATGATGGCTACAGGTGGCGTAAGTATGGGCAGAAAATTGTTAAAGGCAACCCTTACCCAAGGAGCTATTATAAATGCACAACTCCAGGATGCAATGTTCGTAAACATGTAGAGAGAGCTTCAACAGACCCGAAAGCTGTCATAACGACCTACGAAGGTAAACACAATCATGATGTTCCAGTTGGTAAAATCAGCAGCCACTGTTCAGTCAACAGTAACAATCCTCAACTAAAATCACAAAATATAGTTACTGAGAAAAAAATTTCAAGTAACAACACTGATCCTGGGAACTCTCGTCAACAGCCTGCTGGACTTTTACTGTTAAAGGAAGAACAAATAACATAG 1503 46.11 MGDDDEQPPPPPPPPSKSLRPTINLPPRSSMESLFGGGSGLGFGFSPGPMTLVSSFFSDSDDCKSFSQLLAGAMASPVAAVPPSASEFKASTGLLESPELFSPGQGPFGMTHQQALAQVTMQAAEAYSHNQMQAASFSSSVAPSASSSQLLTSLPVEKTKDQPMQPPLQDSAVASKEPSDNSQSEQRLQSSLCNVDRPTDDGYNWRKYGQKQVKGSEFPRSYYKCTHPNCPVKKKVERSLEGQVTEIIYKGEHNHKRPQLNKRAKDVGNSNGYSSIHGNPELSSQVQSGYLNKLNEQTSVSSTAKKDQELSHVTHEQLSGTSDGEGGSEIETGVNRKDEDEPDAKRRVLPLLCRNTEVRISEPASSHRTLTESRIIVQTTSEVDLLDDGYRWRKYGQKIVKGNPYPRSYYKCTTPGCNVRKHVERASTDPKAVITTYEGKHNHDVPVGKISSHCSVNSNNPQLKSQNIVTEKKISSNNTDPGNSRQQPAGLLLLKEEQIT 500
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 35653311 35656087 + ClCG05G023960.2 Cla05g02414 273904
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g02414 500 MobiDBLite consensus disorder prediction 251 283 - -
Cla05g02414 500 MobiDBLite consensus disorder prediction 314 328 - -
Cla05g02414 500 ProSiteProfiles WRKY domain profile. 200 258 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cla05g02414 500 MobiDBLite consensus disorder prediction 474 500 - -
Cla05g02414 500 MobiDBLite consensus disorder prediction 297 345 - -
Cla05g02414 500 Gene3D WRKY domain 371 447 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cla05g02414 500 Gene3D WRKY domain 186 259 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cla05g02414 500 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 16 499 IPR044810 GO:0003700
Cla05g02414 500 PANTHER WRKY TRANSCRIPTION FACTOR 58-RELATED 16 499 - -
Cla05g02414 500 SUPERFAMILY WRKY DNA-binding domain 198 258 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cla05g02414 500 MobiDBLite consensus disorder prediction 148 197 - -
Cla05g02414 500 MobiDBLite consensus disorder prediction 1 31 - -
Cla05g02414 500 MobiDBLite consensus disorder prediction 264 283 - -
Cla05g02414 500 MobiDBLite consensus disorder prediction 1 21 - -
Cla05g02414 500 MobiDBLite consensus disorder prediction 148 210 - -
Cla05g02414 500 Pfam WRKY DNA -binding domain 387 443 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cla05g02414 500 Pfam WRKY DNA -binding domain 200 256 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cla05g02414 500 SMART WRKY_cls 199 257 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cla05g02414 500 SMART WRKY_cls 386 445 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cla05g02414 500 MobiDBLite consensus disorder prediction 330 345 - -
Cla05g02414 500 SUPERFAMILY WRKY DNA-binding domain 378 446 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cla05g02414 500 ProSiteProfiles WRKY domain profile. 381 446 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g02414 Cla-Chr5:35653311 Cla10g00374 Cla-Chr10:5003276 3.58E-81 dispersed
Cla02g01875 Cla-Chr2:33926380 Cla05g02414 Cla-Chr5:35653311 5.94E-75 transposed
Cla06g01236 Cla-Chr6:25608810 Cla05g02414 Cla-Chr5:35653311 3.99E-49 transposed
Cla10g01963 Cla-Chr10:35458588 Cla05g02414 Cla-Chr5:35653311 6.13E-63 transposed
Cla11g00430 Cla-Chr11:4957420 Cla05g02414 Cla-Chr5:35653311 1.86E-142 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61172 PF03106 WRKY 8.60E-26 CL0274 Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g02414 - - cmo:103489160 805.053