Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g02419 ATGAATCCAAAAATATCCATAGTCACATTCAATCCAATTGTATTGCTGCAAGTCAAGGAAGAGGTTCGGTTTCTTTCCCCCCTTTCATCCGATCCAGAAGATCCGGATTTTTTGGTCATGAGCTTTGAACATTCCGGAACTACCGCCGGTTCGTCGGCGCCGGGGACCACCGGAGGCAGGGGAAACTCCTCGTCGTCATCGGCGTCGGGGACGAGCAAGGAGAAGCAAAAGGAGAAAGCAAGAGTGAGTAGAACGTCAATGATATTGTGGCACGCTCACCAGAATGATTCTGCTGCTGTTCGCAAACTCCTGGAGGAGGATCAATCCCTTGTCCATGCCAGAGATTACGACAGCCGCACTCCTCTTCATGTTGCATCGCTTCATGGTTGGATCGACGTTGCCAAGTGCTTGATTGAACACGGTGCTGATGTTAATGCCCAAGATCGCTGGAAGAACACTCCGCTAGCTGATGCGGAAGGAGCTAAAAAGCATGGCATGATTGAGCTTTTAAAATCATACGGTGGCCTTTCCTATGGCCAAAATGGAAGCCATTTTGAACCAAAGCCTGTTCCTCCTCCTCTGCCGAATAAATGTGACTGGGAAATTGATCCTTCTGAACTGGATTTTTCAAACTCAGCTATTATTGGCAAGGGGTCCTTCGGTGAAATTTTGAAGGCCTATTGGCGTGGAACCCCTGTAGCTGTCAAACGTATTCTTCCATCACTTTCAGATGATAGACTTGTGATTCAGGACTTTCGACATGAGGTTAATCTGTTGGTGAAGCTACGCCACCCTAACATTGTCCAATTTCTTGGAGCTGTCACCGAGAAGAAACCACTTATGCTAATCACTGAATACTTAAGAGGGGGCGATCTTCACCAGTACCTCAAGGACAAAGGTTCGCTCAGTCCTGCAACGGCCATCAATTTTGCACTGGACATTGCCAGGAACGTTCTTTTAGTCAATTCTGGTGCGGACCATCTAAAAGTTGGCGATTTTGGTCTAAGCAAACTCATCAAGGTTCAGAATTCACATGATGTTTACAAAATGACTGGCGAGACCGGGAGCTACCGGTATATGGCTCCTGAAGTTTTTAAGCACAGAAAATATGATAAGAAGGTGGATGTGTTTTCTTTTGCGATGATATTATACGAGATGCTTGAGGGAGACCCTCCACTGGCAAATTATGAGCCATATGAAGCTGCCAAGTTAACAGAAGAATGTTGGGCATCTGATATGAACAAGAGACCATCTTTCTTGGAAATTCTCAAAAGACTTGAAAAGGTGGGTTCTTGGAATGAGGCAGCAATGTGGTGTTTAGCGGAGCAATGGAAGTTAGATCTGAGGGTCAGGTCCGATAAACTCCCAGCTCCTGTAATTCCGAGGACCCGTTTGCAGGTTTGGTTTGTTCGTGTTTGTTCCAGCATTTTGCTTTGGACATTTTTGGTTCAGCTTGTTGCATTTGGGAAGCTATGGCATCCCCTTTTTATATCCAATATAACCAATCGGATTTCGCAAGTTACTGGGATTCCGCTCTCTCTACACGTCGAAGAGTCCATTCAATCAACGCCACTTCTTCCAGCAAGAAACTATTCAAGTAATGGTTATCTACGGGTGTCCTGCAATGGGGGCTTAAATCAGATGCGTGCTGCGATCTGTGATATGGTGACCATTGCACGCCTTTTGAACCTGACATTGGTTGTTCCAGAACTTGATAAAACATCTTTTTGGGCGGACCCTAGTAATTTTGATGACATATTCAATGTGAAGCATTTTATTGATTCACTGAGAGACGAAGTCCGCATTGTCAGGAGATTACCCAAAAAGTTCAATAGGAAATATGGATTTATACCATTTGCCATGCCTCCAGTTAGCTGGTCAAATGAAAAATATTATTTAGAACAGATTCTTCCTCTCATTAAGAAGCATACAGTGTTACATTTTAATAAAACAGATACACGCTTGGCAAACAACGGAATCCCAATTTATCTACAGAAACTCAGGTGCCGTGTCAATTTCCAGGCACTGAAATTCTCCCCTCAGATTGAGACACTGGGTTATAAGTTAATTCGTCTACTTCAAGAAAAGGGACCTATTGTGGTCTTGCATCTGAGATACGAGATGGATATGCTGGCCTTTTCAGGTTGTACACATGGCTGTACAAAGGAAGAAGCTGATGAGCTCAAACAGATGAGATATGCATTCCCTTGGTGGAGGGAGAAAGAGATCTTGTCTGACGAGAGGAGATCACAAGGTCTGTGTCCTTTGACCCCAGAGGAAGCAGCACTGACATTACAGGCCTTGGGTTTTAACAAGGAGACACAAATATATATTGCTGCCGGTGAGATTTATGGTAGTGAACGGAGACTTGCAACTCTTAGGGCAGCCTTCCCAATGATTGTGAAAAAGGAAGCATTGCTATCCCCAGAAGAATTGAAGCAATTCCGGAATCATTCGTCACAAATGGCAGCTTTAGATTTTATGGTATCTGTAGCCAGTAACACTTTCATTCCAACCTATGATGGTAACATGGCAAGACTTGTTGAAGGTCACCGGAGATACCTGGGGTTTAAAAGAACAGTAACACTGGATAGAAAAAAGCTAGTGCAATTATTGGATATGCACCAGAATGGTACACTTTCTTGGGATGACTTTGCAGCTGCTGTAAGATTGGCGCATGAGAAAAGACAGGGTCAGCCAATGCAACGAAGGGCAATTCCAGAAAAGCCAAAGGAAGAAGATTACTTTTATGCAAATCCTCACGAATGCTTCTGCGAGGGAATGAACTGCGACGACTCACTAAGCCATAGTAACTCAAGTAAAGTACTTTAA 2832 44.1 MNPKISIVTFNPIVLLQVKEEVRFLSPLSSDPEDPDFLVMSFEHSGTTAGSSAPGTTGGRGNSSSSSASGTSKEKQKEKARVSRTSMILWHAHQNDSAAVRKLLEEDQSLVHARDYDSRTPLHVASLHGWIDVAKCLIEHGADVNAQDRWKNTPLADAEGAKKHGMIELLKSYGGLSYGQNGSHFEPKPVPPPLPNKCDWEIDPSELDFSNSAIIGKGSFGEILKAYWRGTPVAVKRILPSLSDDRLVIQDFRHEVNLLVKLRHPNIVQFLGAVTEKKPLMLITEYLRGGDLHQYLKDKGSLSPATAINFALDIARNVLLVNSGADHLKVGDFGLSKLIKVQNSHDVYKMTGETGSYRYMAPEVFKHRKYDKKVDVFSFAMILYEMLEGDPPLANYEPYEAAKLTEECWASDMNKRPSFLEILKRLEKVGSWNEAAMWCLAEQWKLDLRVRSDKLPAPVIPRTRLQVWFVRVCSSILLWTFLVQLVAFGKLWHPLFISNITNRISQVTGIPLSLHVEESIQSTPLLPARNYSSNGYLRVSCNGGLNQMRAAICDMVTIARLLNLTLVVPELDKTSFWADPSNFDDIFNVKHFIDSLRDEVRIVRRLPKKFNRKYGFIPFAMPPVSWSNEKYYLEQILPLIKKHTVLHFNKTDTRLANNGIPIYLQKLRCRVNFQALKFSPQIETLGYKLIRLLQEKGPIVVLHLRYEMDMLAFSGCTHGCTKEEADELKQMRYAFPWWREKEILSDERRSQGLCPLTPEEAALTLQALGFNKETQIYIAAGEIYGSERRLATLRAAFPMIVKKEALLSPEELKQFRNHSSQMAALDFMVSVASNTFIPTYDGNMARLVEGHRRYLGFKRTVTLDRKKLVQLLDMHQNGTLSWDDFAAAVRLAHEKRQGQPMQRRAIPEKPKEEDYFYANPHECFCEGMNCDDSLSHSNSSKVL 943
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 35702973 35719575 + ClCG05G024010.2 Cla05g02419 273909
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g02419 943 Gene3D Transferase(Phosphotransferase) domain 1 289 453 - -
Cla05g02419 943 ProSitePatterns Protein kinases ATP-binding region signature. 215 236 IPR017441 GO:0005524
Cla05g02419 943 ProSiteProfiles Ankyrin repeat profile. 117 149 IPR002110 GO:0005515
Cla05g02419 943 ProSiteProfiles Protein kinase domain profile. 209 429 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla05g02419 943 CDD O-FucT_plant 536 860 IPR024709 -
Cla05g02419 943 PANTHER RHAMNOGALACTURONAN I RHAMNOSYLTRANSFERASE 1 458 940 - -
Cla05g02419 943 Gene3D Phosphorylase Kinase; domain 1 194 288 - -
Cla05g02419 943 PANTHER OS02G0726500 PROTEIN-RELATED 458 940 - -
Cla05g02419 943 MobiDBLite consensus disorder prediction 45 83 - -
Cla05g02419 943 Gene3D - 59 182 IPR036770 -
Cla05g02419 943 SUPERFAMILY Protein kinase-like (PK-like) 207 432 IPR011009 -
Cla05g02419 943 ProSiteProfiles Ankyrin repeat region circular profile. 117 149 - -
Cla05g02419 943 Pfam Ankyrin repeats (3 copies) 88 148 IPR002110 GO:0005515
Cla05g02419 943 CDD STKc_MAP3K-like 215 426 - -
Cla05g02419 943 Pfam GDP-fucose protein O-fucosyltransferase 536 855 IPR019378 -
Cla05g02419 943 SUPERFAMILY Ankyrin repeat 88 175 IPR036770 -
Cla05g02419 943 Pfam Protein tyrosine and serine/threonine kinase 213 317 IPR001245 GO:0004672|GO:0006468
Cla05g02419 943 MobiDBLite consensus disorder prediction 45 71 - -
Cla05g02419 943 SMART ANK_2a 117 146 IPR002110 GO:0005515
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla04g01133 Cla-Chr4:26544253 Cla05g02419 Cla-Chr5:35702973 0 dispersed
Cla05g00345 Cla-Chr5:3114428 Cla05g02419 Cla-Chr5:35702973 1.38E-77 dispersed
Cla05g02419 Cla-Chr5:35702973 Cla07g01528 Cla-Chr7:32470928 0 dispersed
Cla09g01326 Cla-Chr9:21182462 Cla05g02419 Cla-Chr5:35702973 1.53E-56 dispersed
Cla05g02419 Cla-Chr5:35702973 Cla06g01519 Cla-Chr6:28710267 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80594 PF10250 O-FucT 1.70E-74 CL0113 Cla PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g02419 K23280 - csv:101216054 978.393