Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cla05g02431 | ATGGCTTCCGTCCTTATCTTTTTGGCAGGTTTCTATGCCATAGTTTCCTCTGTTGATGCTTATGCAGGTGGAGGCTGGACTGGGGCTCACGCCACCTTCTATGGTGGGAGTGATGCTTCTGGGACAATGGGTGGGGCTTGTGGGTATGGCAACTTATACAGCCAAGGATATGGAACAAACACTGCTGCTTTGAGTACGGCTCTATTCAACAATGGCTTGAGCTGTGGCTCTTGCTACGAGATTAGGTGCGCCAGTGACCCTAAATGGTGCTTGCCAGGCTCCATTGTGGTCACAGCCACCAATTTCTGCCCTCCAAACAATGCCCTTCCCAACAACGCTGGAGGCTGGTGCAACCCTCCTCTTCAACACTTTGATCTCTCTCAACCTGTATTCCAACACATTGCTCAGTACAGAGCAGGAATTGTGCCTGTTGCTTACAGAAGGGTACCCTGCAGGAGAAGAGGAGGCATAAGGTTCACCATCAATGGGCACTCCTACTTCAACTTAGTCCTCATCACAAACGTGGGTGGTGCTGGTGATGTACACGCAGTTTCCATCAAAGGATCAAGAACTGGTTGGCAAGCAATGTCAAGGAACTGGGGACAGAACTGGCAGAGTAACAGCTACCTCAATGGTCAAAGCCTCTCCTTCAAGGTAACCACCAGCGACGGCCGAACCGTCATCTCCAACAACGCTGTCCCAGCTGGCTGGTCCTTTGGACAGACTTACAATGCTCCATGTCAGTGGGAGCAAATGAAAGGCAGTAGGTTAGCTGCCAAAAAGACAGACAGGGATAAAGCAAAAACAAAAACAACTCCTTGA | 822 | 50.12 | MASVLIFLAGFYAIVSSVDAYAGGGWTGAHATFYGGSDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIRCASDPKWCLPGSIVVTATNFCPPNNALPNNAGGWCNPPLQHFDLSQPVFQHIAQYRAGIVPVAYRRVPCRRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTGWQAMSRNWGQNWQSNSYLNGQSLSFKVTTSDGRTVISNNAVPAGWSFGQTYNAPCQWEQMKGSRLAAKKTDRDKAKTKTTP | 273 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 35815273 | 35818188 | + | ClCG05G024150.2 | Cla05g02431 | 273921 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cla05g02431 | 273 | SUPERFAMILY | Barwin-like endoglucanases | 25 | 174 | IPR036908 | - | |
| Cla05g02431 | 273 | Pfam | Expansin C-terminal domain | 157 | 234 | IPR007117 | - | |
| Cla05g02431 | 273 | MobiDBLite | consensus disorder prediction | 254 | 273 | - | - | |
| Cla05g02431 | 273 | Gene3D | - | 156 | 249 | IPR036749 | - | |
| Cla05g02431 | 273 | SUPERFAMILY | PHL pollen allergen | 153 | 244 | IPR036749 | - | |
| Cla05g02431 | 273 | PANTHER | EXPANSIN-A15 | 7 | 244 | IPR002963 | GO:0009664 | |
| Cla05g02431 | 273 | PRINTS | Expansin signature | 95 | 105 | IPR002963 | GO:0009664 | |
| Cla05g02431 | 273 | PRINTS | Expansin signature | 131 | 144 | IPR002963 | GO:0009664 | |
| Cla05g02431 | 273 | PRINTS | Expansin signature | 114 | 131 | IPR002963 | GO:0009664 | |
| Cla05g02431 | 273 | PRINTS | Expansin signature | 83 | 94 | IPR002963 | GO:0009664 | |
| Cla05g02431 | 273 | PRINTS | Expansin signature | 167 | 188 | IPR002963 | GO:0009664 | |
| Cla05g02431 | 273 | PRINTS | Expansin signature | 155 | 167 | IPR002963 | GO:0009664 | |
| Cla05g02431 | 273 | PRINTS | Expansin signature | 56 | 70 | IPR002963 | GO:0009664 | |
| Cla05g02431 | 273 | PRINTS | Expansin signature | 231 | 247 | IPR002963 | GO:0009664 | |
| Cla05g02431 | 273 | PRINTS | Expansin signature | 202 | 223 | IPR002963 | GO:0009664 | |
| Cla05g02431 | 273 | MobiDBLite | consensus disorder prediction | 256 | 273 | - | - | |
| Cla05g02431 | 273 | ProSiteProfiles | Expansin, Cellulose-binding-like domain profile. | 166 | 245 | IPR007117 | - | |
| Cla05g02431 | 273 | ProSiteProfiles | Expansin, family-45 endoglucanase-like domain profile. | 44 | 156 | IPR007112 | - | |
| Cla05g02431 | 273 | Pfam | Lytic transglycolase | 61 | 146 | IPR009009 | - | |
| Cla05g02431 | 273 | Gene3D | - | 13 | 152 | IPR036908 | - | |
| Cla05g02431 | 273 | PANTHER | EXPANSIN | 7 | 244 | - | - | |
| Cla05g02431 | 273 | SMART | dpbb_1 | 61 | 146 | IPR007112 | - | |
| Cla05g02431 | 273 | PRINTS | Expansin/Lol pI family signature | 25 | 40 | IPR007118 | GO:0005576 | |
| Cla05g02431 | 273 | PRINTS | Expansin/Lol pI family signature | 43 | 61 | IPR007118 | GO:0005576 | |
| Cla05g02431 | 273 | PRINTS | Expansin/Lol pI family signature | 231 | 245 | IPR007118 | GO:0005576 | |
| Cla05g02431 | 273 | PRINTS | Expansin/Lol pI family signature | 139 | 155 | IPR007118 | GO:0005576 | |
| Cla05g02431 | 273 | PRINTS | Expansin/Lol pI family signature | 65 | 83 | IPR007118 | GO:0005576 | |
| Cla05g02431 | 273 | PRINTS | Expansin/Lol pI family signature | 193 | 207 | IPR007118 | GO:0005576 |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cla05g02431 | Cla-Chr5:35815273 | Cla11g00546 | Cla-Chr11:6206278 | 1.07E-139 | dispersed | |
| Cla09g01916 | Cla-Chr9:36830486 | Cla05g02431 | Cla-Chr5:35815273 | 1.05E-108 | dispersed | |
| Cla08g01405 | Cla-Chr8:26945619 | Cla05g02431 | Cla-Chr5:35815273 | 1.57E-120 | transposed | |
| Cla11g00693 | Cla-Chr11:8177039 | Cla05g02431 | Cla-Chr5:35815273 | 1.91E-144 | transposed | |
| Cla04g01190 | Cla-Chr4:27061578 | Cla05g02431 | Cla-Chr5:35815273 | 2.51E-86 | wgd | |
| Cla05g02431 | Cla-Chr5:35815273 | Cla06g01586 | Cla-Chr6:29404223 | 4.40E-130 | wgd | |
| Cla05g02431 | Cla-Chr5:35815273 | Cla09g01772 | Cla-Chr9:35114897 | 5.91E-139 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cla05g02431 | - | - | csv:101217956 | 499.975 |