Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g02440 ATGCCTATCTCCTGTATTCCAACTTGCCAATTCACTCTCACAAAACCAAGCTTCACCTTTTCCAAGAATGAGTTCATGAATCCACCCCACCCTCTTTCTCTTTTGTCCAAATGTACATCTCTCAGGGAGCTCAAGCAAATTCAAGCCTATACCATCAAAACCAATCTTCAGAATGACATCTCTATTCTCACTAAGCTCATTAATTTCTGCACACTCAACCCCACAATTTCGTCCATGGACCATGCCCACCATCTGTTCGATCAAATTCCTGACAAGGATATTGTCCTCTTTAACATAATGGCACGTGGTTATGCTCGCTCTAATTCTCCCTATCTTGCCTTTTCTCTTTTTGCTCAACTCCTGTGCTCTGGCCTTCTTCCTGATGACTACACATTCTCGTCCCTTCTCAAGGCGTGTGCGAGTTCTAAGGCCTTGAAAGAAGGTATGGAGTTGCATTGTTTTGCTATTAAACTTGGACTGAATCATAATATTTACATATGCCCAACTCTCATAAATATGTATGCGGAGTGCAATGACATGAATGCAGCACGTGGAGTGTTTGATGAAATGGAGCAGCCATGTATTGTTAGCTATAATGCAATTATCACGGGTTATGCTCGAAGTAGTCAGCCCAACGAGGCTTTGTCGTTGTTTAGAGAATTGCAAGCAAGCAATCTTGAGCCTACTGATGTTACTATGCTTAGTGTAATTATGTCATGTGCTTTGTTGGGAGCACTAGACCTGGCAAGGTGGATTCATGAATATGTTAAGAAGAAAGGGTTTGATAAATATGTGAAGGTGAACACTGCACTTATAGATATGTTTGCAAAATGCGGAAGTCTAACTGATGCTATTTCTATCTTTGAGGGCATGCATGTGAGAGATACACAAGCTTGGTCTGCGATGATAGTTGCATTTGCAACTCATGGGGATGGCTTGAAAGCTATCTCAATGTTTGAAGAGATGAAGAGGGCAGGAGTTAGATCTGATGAGATCACTTTTTTGGGGCTTTTGTATGCTTGTAGTCATGCAGGGCTAGTAGAGCAAGGTAGAGGGTATTTCTATAGTATGTCTAAAAACTATGGAATAACTCCAGGGATCAAACATTATGGGTGTATGGTGGATTTGCTTGGTCGAACAGGTCGTTTAGACGAGGCTTATAACTTCATACATGAACTGGAAATTAAGCCCACACCTATACTCTGGCGCACCTTGTTATCTGCTTGCAGCACCCATGGTAATGTCGACATGGCAAAACGGGTTATTGACAGAATTTTTGAATTAGATGACTCCCATGGAGGGGACTATGTTATATTATCAAACTTGTGTGCTAGAGTGGGAAGATGGGAAGATGTGAATCATTTGAGGAAATTGATGAAAGATAGAGGGGTGGTAAAAGTTCCTGGGTGTAGTTCTGTGGAGGTAAACAATGTAGTACATGAGTTCTTCTCTGGAGATGGAGTTCACTGCATTTCGGTGGAGTTGCGCCGAGCACTTGATGAGTTAATCAAAGAAATAAAGTTGGTGGGATATGTTCCTGATACTTCTTTAGTATATCATGTTGATATGGAAGAGGAAGGGAAAGAACTTGTCCTGAGATATCATAGTGAAAAATTGGCCATGGCTTTTGGACTCCTAAATACACCTCCTGGTACAACAATAAGGGTAGTCAAGAATCTCCGGATTTGTGGAGATTGCCATAACACTGCAAAACTTATATCTTTAATTTTTGGGAGGCAAATCGTAATTAGAGACGTTCAACGATTCCATCAATTTGAAGATGGGAAATGCTCCTGTGTTACGTCCTCGTGA 1812 41.28 MPISCIPTCQFTLTKPSFTFSKNEFMNPPHPLSLLSKCTSLRELKQIQAYTIKTNLQNDISILTKLINFCTLNPTISSMDHAHHLFDQIPDKDIVLFNIMARGYARSNSPYLAFSLFAQLLCSGLLPDDYTFSSLLKACASSKALKEGMELHCFAIKLGLNHNIYICPTLINMYAECNDMNAARGVFDEMEQPCIVSYNAIITGYARSSQPNEALSLFRELQASNLEPTDVTMLSVIMSCALLGALDLARWIHEYVKKKGFDKYVKVNTALIDMFAKCGSLTDAISIFEGMHVRDTQAWSAMIVAFATHGDGLKAISMFEEMKRAGVRSDEITFLGLLYACSHAGLVEQGRGYFYSMSKNYGITPGIKHYGCMVDLLGRTGRLDEAYNFIHELEIKPTPILWRTLLSACSTHGNVDMAKRVIDRIFELDDSHGGDYVILSNLCARVGRWEDVNHLRKLMKDRGVVKVPGCSSVEVNNVVHEFFSGDGVHCISVELRRALDELIKEIKLVGYVPDTSLVYHVDMEEEGKELVLRYHSEKLAMAFGLLNTPPGTTIRVVKNLRICGDCHNTAKLISLIFGRQIVIRDVQRFHQFEDGKCSCVTSS 603
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 35862331 35864919 - ClCG05G024240.1 Cla05g02440 273930

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g02440 603 Pfam PPR repeat family 295 341 IPR002885 -
Cla05g02440 603 Pfam PPR repeat family 193 240 IPR002885 -
Cla05g02440 603 Pfam PPR repeat family 92 140 IPR002885 -
Cla05g02440 603 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 295 329 IPR002885 -
Cla05g02440 603 TIGRFAM PPR: pentatricopeptide repeat domain 298 330 IPR002885 -
Cla05g02440 603 TIGRFAM PPR: pentatricopeptide repeat domain 95 128 IPR002885 -
Cla05g02440 603 TIGRFAM PPR: pentatricopeptide repeat domain 196 229 IPR002885 -
Cla05g02440 603 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 194 228 IPR002885 -
Cla05g02440 603 Gene3D Tetratricopeptide repeat domain 245 358 IPR011990 GO:0005515
Cla05g02440 603 Gene3D Tetratricopeptide repeat domain 359 507 IPR011990 GO:0005515
Cla05g02440 603 PANTHER BNAA02G26650D PROTEIN 22 589 - -
Cla05g02440 603 Pfam E motif 412 474 IPR046848 -
Cla05g02440 603 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 93 127 IPR002885 -
Cla05g02440 603 Gene3D Tetratricopeptide repeat domain 153 244 IPR011990 GO:0005515
Cla05g02440 603 Gene3D Tetratricopeptide repeat domain 30 152 IPR011990 GO:0005515
Cla05g02440 603 Pfam PPR repeat 269 293 IPR002885 -
Cla05g02440 603 Pfam PPR repeat 370 393 IPR002885 -
Cla05g02440 603 Pfam PPR repeat 169 191 IPR002885 -
Cla05g02440 603 Pfam DYW family of nucleic acid deaminases 510 600 IPR032867 GO:0008270
Cla05g02440 603 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 22 589 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g02440 - - - csv:116404120 1125.15
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g02440 Cla-Chr5:35862331 Cla06g01081 Cla-Chr6:23432994 2.35E-76 dispersed
Cla01g01124 Cla-Chr1:18656818 Cla05g02440 Cla-Chr5:35862331 1.88E-155 transposed
Cla04g01201 Cla-Chr4:27179719 Cla05g02440 Cla-Chr5:35862331 7.08E-151 transposed
Cla05g00410 Cla-Chr5:3706888 Cla05g02440 Cla-Chr5:35862331 5.07E-119 transposed
Cla06g01583 Cla-Chr6:29385777 Cla05g02440 Cla-Chr5:35862331 8.43E-116 transposed
Cla07g00131 Cla-Chr7:1511867 Cla05g02440 Cla-Chr5:35862331 7.57E-158 transposed
Cla08g01326 Cla-Chr8:26141548 Cla05g02440 Cla-Chr5:35862331 3.05E-171 transposed
Cla09g00565 Cla-Chr9:5210201 Cla05g02440 Cla-Chr5:35862331 5.53E-105 transposed
Cla10g01438 Cla-Chr10:29596080 Cla05g02440 Cla-Chr5:35862331 1.69E-119 transposed
Cla10g01622 Cla-Chr10:31797240 Cla05g02440 Cla-Chr5:35862331 6.27E-156 transposed
Cla11g01108 Cla-Chr11:22529091 Cla05g02440 Cla-Chr5:35862331 3.37E-14 transposed
Cla05g02440 Cla-Chr5:35862331 Cla08g00884 Cla-Chr8:21331660 1.84E-148 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g919 . . . . . . . . . Cmo18g01170 . Cma18g01149 . Car18g01058 . Cpe09g00181 . . . . . . . . Cla05g02440 . . . . . . . . . . . . Chy10g01005 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000117 7 10 4 7 7 7 7 7 6 8 6 5 7 4 3 8 6 7 7 7 7 7 6 6 2 5 4 4 5 11 187