Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g02445 ATGGAAGAGAAACAAAGCGATGTGGTGTTGTTTGGAACGTGGTATAGTTCATACTGCACTAGAATTGTGCTAGCACTAAAAATCAAAGGCATAAACTTTGAGTATGTGGAAGAAGATTTAGCAAATAAGAGTGAATTGCTTCTCCAGTACAATCCAGTTCATCAAAAAGTCCCAGTACTCGTCCATAAAGGAAGGCCAATTGCAGAGTCCTTTGTCATTCTTGAATACATAGAAGAAAATTGGAACTACCATCCCAAAATTCTACCTGATCACCCATATGAAAGAGCCAAAGTTCGCTTCTGGGCGCAATTCTATGATCAAAAGATTCTATTAGGCGCCTTGCCCATCCTCAAATCCAAAGGAGAAGAAAGAGAGAGAGCTGTTGAGGAGCAATCAAAAATGATAAGGGTGTTTGAAGAAGGAATGAAGAAAGATTTTCCTGGAAAATTTCCCTTTTACCAAGGGAGAAACTTGGGACTTCTTGATATAGTTGTAGGGCCTAATGCTTGCAACTATTTGGCATTGCGCGAGGTTGTTGGAGATGTAATTGACTCAAAAAGAAACCCTGATTTTTTCTCATGGGTGGATGCTTTGAAGGGACATCCTCTGATTAAGGAAACGCTTCCTCCTCACCATAAAATGGTACACAAACTGAAAGAGAAGATCCATATAAAGCCTAAAGATAGCTAA 690 39.57 MEEKQSDVVLFGTWYSSYCTRIVLALKIKGINFEYVEEDLANKSELLLQYNPVHQKVPVLVHKGRPIAESFVILEYIEENWNYHPKILPDHPYERAKVRFWAQFYDQKILLGALPILKSKGEERERAVEEQSKMIRVFEEGMKKDFPGKFPFYQGRNLGLLDIVVGPNACNYLALREVVGDVIDSKRNPDFFSWVDALKGHPLIKETLPPHHKMVHKLKEKIHIKPKDS 229
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 35895016 35895810 - ClCG05G024310.1 Cla05g02445 273935

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g02445 229 CDD GST_N_Tau 8 81 - -
Cla05g02445 229 Gene3D - 88 227 - -
Cla05g02445 229 Pfam Glutathione S-transferase, N-terminal domain 8 78 IPR004045 -
Cla05g02445 229 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 91 222 IPR010987 -
Cla05g02445 229 ProSiteProfiles Glutaredoxin domain profile. 1 95 - -
Cla05g02445 229 SFLD Main.3: Omega- and Tau-like 4 221 IPR045073 -
Cla05g02445 229 SUPERFAMILY Thioredoxin-like 7 109 IPR036249 -
Cla05g02445 229 Gene3D Glutaredoxin 1 87 - -
Cla05g02445 229 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 6 85 IPR004045 -
Cla05g02445 229 PANTHER GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING 4 221 IPR045073 -
Cla05g02445 229 CDD GST_C_Tau 92 215 IPR045074 GO:0004364|GO:0006749
Cla05g02445 229 SFLD Glutathione Transferase (cytosolic) 4 221 IPR040079 -
Cla05g02445 229 PANTHER GLUTATHIONE S-TRANSFERASE, AMINO-TERMINAL DOMAIN PROTEIN 4 221 - -
Cla05g02445 229 SUPERFAMILY GST C-terminal domain-like 80 220 IPR036282 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g02445 K00799 GST, gst; glutathione S-transferase [EC:2.5.1.18] - vvi:100260235 298.901
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g02445 Cla-Chr5:35895016 Cla07g01007 Cla-Chr7:26425770 4.86E-42 dispersed
Cla01g00840 Cla-Chr1:10176907 Cla05g02445 Cla-Chr5:35895016 3.81E-38 transposed
Cla05g00238 Cla-Chr5:2155011 Cla05g02445 Cla-Chr5:35895016 9.11E-07 transposed
Cla05g00265 Cla-Chr5:2393890 Cla05g02445 Cla-Chr5:35895016 9.64E-57 transposed
Cla06g01435 Cla-Chr6:27926213 Cla05g02445 Cla-Chr5:35895016 2.02E-52 transposed
Cla04g01202 Cla-Chr4:27190439 Cla05g02445 Cla-Chr5:35895016 1.31E-07 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g909 . . . . . . Bma14g01643 . . Cmo18g01176 . Cma18g01154 . Car18g01063 . . . . . . . . . . Cla05g02445 Cam05g2631 Cec05g2664 Cco05g2702 Clacu05g2634 Cmu05g2488 Cre05g2601 . . . . Lsi04g00429 . . Cme10g00419 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012942 0 1 0 2 0 2 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 0 1 2 28