Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g02447 ATGGGTTTGGTTTCCTGTTCGACTACCTTCACAACTTTAGCTGAATCTTCAATCTACTGTCTTTCTAGCCCATGGAAGCCATCGTCTTCTATGAAACCCACCGGGAAACGAACTCCAAAGATTCTACTCTTTGGCTACCGTAATTTGTCCCTGCGATTCTCACCTCGACGTTCCAATTCCCTGTCCCAAAATGGGTTTCGTCCTCTTTGCTTCTTCAATGCTAAAGATGAATCCGGCGGCGATTTTCAGCAGAAGGAAAATGGGGCGGGATGGCCTATCTTGAGGCGGTGGGACGTGCCATGGGGATGGCAAACTGTTTCATTAACTTCACTAGCTTGTGGATTAAGTTTCATTGTGACAGGATTGGTTGAATCTGCTGCCATACCTTATCTTGGTATTCGCATTGAAGAGCTAAGCTTAGACGAGAAGGCTGAAATACTTTTCCTGGACCAAGGCATTACAACCGTGGCAGTGCTTGGGATCTTATACAGCATTGCCAACACTTTCCAACCACTTCCTGATGACTTGTATCGCTATGATATTAGGGACCCCTTGAATCTGCAGAAGGGCTGGCTCTTATGGGCAGGAGTTGGTCTGGTTGGTGCCCTGGCTTCTATTGCTGTGACAGGAGCGGTCTTGTCTTCATTTAACGGCGGGAGTACTGAAAGAGAGACAGACGCTCTAGTACGCTTGCTTCCACTAATTGGATCTTCTAGCATCAGCACTGCTTGTCTGGTGGGCATCACAGGGGTCCTTGCTCCAGTTCTTGAAGAGACTGTGTTCCGGGGATTTTTTATGGTGTCTCTCACCAAGTGGGTTCCCACACCAGTTGCCGTTCTGATTAGTGCAGCTGTATTTGCCCTTGCTCATCTCACGCCTGGAGAGTTTCCCCAGCTCTTTGTGCTTGGAACTGCTCTGGGATTTTCTTATGCTCAAACTCGCAACCTCTTGACCCCCATCACCATACATGCTTTGTGGAACTCTGGCGTCATTTTGCTTCTTACCTTCCTTTCGCTCCAAGGTTACGATATCAAGGAATTGCTGCAGACAAGATGA 1056 47.92 MGLVSCSTTFTTLAESSIYCLSSPWKPSSSMKPTGKRTPKILLFGYRNLSLRFSPRRSNSLSQNGFRPLCFFNAKDESGGDFQQKENGAGWPILRRWDVPWGWQTVSLTSLACGLSFIVTGLVESAAIPYLGIRIEELSLDEKAEILFLDQGITTVAVLGILYSIANTFQPLPDDLYRYDIRDPLNLQKGWLLWAGVGLVGALASIAVTGAVLSSFNGGSTERETDALVRLLPLIGSSSISTACLVGITGVLAPVLEETVFRGFFMVSLTKWVPTPVAVLISAAVFALAHLTPGEFPQLFVLGTALGFSYAQTRNLLTPITIHALWNSGVILLLTFLSLQGYDIKELLQTR 351
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 35903644 35907034 - ClCG05G024330.2 Cla05g02447 273937

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g02447 351 Pfam Type II CAAX prenyl endopeptidase Rce1-like 245 327 IPR003675 GO:0004222|GO:0016020|GO:0071586
Cla05g02447 351 PANTHER CAAX AMINO TERMINAL PROTEASE 46 340 - -
Cla05g02447 351 PANTHER CAAX AMINO TERMINAL PROTEASE FAMILY PROTEIN 46 340 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g02447 K07052 K07052; CAAX protease family protein - csv:101219539 644.425
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g00079 Cla-Chr1:656480 Cla05g02447 Cla-Chr5:35903644 5.07E-21 dispersed
Cla05g02447 Cla-Chr5:35903644 Cla07g00280 Cla-Chr7:3062292 1.11E-14 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g906 . . . . . . Bma14g01642 . Cmo04g01732 Cmo18g01177 . Cma18g01156 . Car18g01065 Sed01g3541 Cpe09g00174 Cpe01g01462 Bhi07g01572 Tan04g1086 Cmetu10g1335 Lac13g0313 Hepe10g1736 . . Cla05g02447 Cam05g2633 Cec05g2666 Cco05g2704 Clacu05g2636 Cmu05g2490 Cre05g2603 Cone13ag0957 . . . Lsi04g00430 Csa05g02444 Chy10g00996 Cme10g00421 . Blo11g00772 . . . . . . . . . Cma04g01654 . Car04g01694 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009356 0 1 1 2 0 1 2 1 1 1 1 1 2 1 0 3 1 1 2 1 1 1 1 1 1 1 1 1 1 1 33