Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g02451 ATGATCATGGATGGTGAAAATGGGATCCGAAGACCTAATTTTCCATTACAATTGTTGGAGAAGAAAAAGGAAGAACAACAACAGCCATGTTCCTCCTCCGCAAACAACGGAGGAACAACAACGACGACAATAACAACAACTCCAAATCCAAATCTTCAATCTTCTTCTTCACCCAAGAAGCCACCTCCCAAAAGGGCCACCACCAAAGACCGTCACACAAAAGTAGATGGCCGTGGCCGTCGGATTCGTATGCCTGCCCTTTGTGCTGCTAGGGTTTTTCAACTCACTCGAGAGCTCGGCCACAAGTCCGATGGCGAAACAATTGAGTGGCTTCTACAACAAGCTGAGCCTGCCGTTATTGCTGCAACCGGTACTGGTACCATTCCAGCTAATTTCACTTCTCTTAATATCTCCCTCCGTAGCTCCGGCTCCACCATTTCCGCTCCTTCTCATCTTCGGACGAGCTATTTTAGTCCCACGCAATTCGCCGTCAGAACAAGATCCGATCTTTGGGACAGAAACAACAATCATAATCATAATCTCGTGGATGATTCCTCTACGTTCTTGAATTTCAACGCTCCTAATTATGTGAACGTGTTCAAGCAAGATCAAGGTGGGATTGACGTCACCGAGGCGGGAAAGAAACGGCGGTCGGAGCAGTCAGAATCATCGTCGGATAATTATTTGGTTCAAACGAGTACCGGGTCAATTCCAGCGAGTCAAAGCAGTCCATTGCCGGCGACATTTTGGATGGTGACGAATCCAAGCAATCAAGGGAGTGATCCGATGTGGACATTTCCGTCGGTGGGTAACAGCAGCATGTTGAGAGGGGCGGGGGCGGGTGGTGGCGGCGGCGGCGGCGGCGGGGGATTTCATTTCATGAATCTGCCACCACCAATGGCACTTTTGCCAAGTGGACAACAGTTGGGGACAGGAATCGGCAGTGGCGGTGGTCCGGCGACGGAGAGCCACTTGGGGATGTTGGCTGCTCTAAGTGCTTATAGAACAACGATGCCGGGATTGTCAGTTTCAGAATCTCCAACATCAAATAATCCTGATCAATCATAG 1068 49.72 MIMDGENGIRRPNFPLQLLEKKKEEQQQPCSSSANNGGTTTTTITTTPNPNLQSSSSPKKPPPKRATTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTSLNISLRSSGSTISAPSHLRTSYFSPTQFAVRTRSDLWDRNNNHNHNLVDDSSTFLNFNAPNYVNVFKQDQGGIDVTEAGKKRRSEQSESSSDNYLVQTSTGSIPASQSSPLPATFWMVTNPSNQGSDPMWTFPSVGNSSMLRGAGAGGGGGGGGGGFHFMNLPPPMALLPSGQQLGTGIGSGGGPATESHLGMLAALSAYRTTMPGLSVSESPTSNNPDQS 355
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 35942771 35943838 + ClCG05G024370.1 Cla05g02451 273941
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g02451 355 ProSiteProfiles TCP domain profile. 68 122 IPR017887 -
Cla05g02451 355 MobiDBLite consensus disorder prediction 28 62 - -
Cla05g02451 355 MobiDBLite consensus disorder prediction 1 80 - -
Cla05g02451 355 MobiDBLite consensus disorder prediction 223 241 - -
Cla05g02451 355 PANTHER TRANSCRIPTION FACTOR TCP23 11 350 - -
Cla05g02451 355 MobiDBLite consensus disorder prediction 211 241 - -
Cla05g02451 355 Pfam TCP family transcription factor 67 180 IPR017887 -
Cla05g02451 355 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 11 350 IPR005333 GO:0003700
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g02451 Cla-Chr5:35942771 Cla06g00015 Cla-Chr6:195568 8.15E-38 dispersed
Cla11g01311 Cla-Chr11:26626250 Cla05g02451 Cla-Chr5:35942771 2.39E-47 transposed
Cla04g01209 Cla-Chr4:27239889 Cla05g02451 Cla-Chr5:35942771 2.91E-54 wgd
Cla05g02451 Cla-Chr5:35942771 Cla06g01596 Cla-Chr6:29505943 5.53E-91 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61181 PF03634 TCP 3.90E-38 No_clan Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g02451 - - csv:101206263 580.867