Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cla05g02458 | ATGAATCCTGGTGGTTATACGGTTGAAGTGACGGGCTTGTCTCCTAAAGCAACAGAGAAAGATGTCCTCGATTTCTTCGCTTTCTCTGGCGCAATCGAGCTTGTTGAGATTGTTAGATCTGGTGAAGATGCCTGCACTGCCTATGTAACATTCAAAGATGCTTATTCTCAAGAGACTGCTTGCTTGCTGAGTGGTGCAACAATTGTAGATCAAAGAGTATGTATAACACGGTGGGGACATTTTGATGATGAATTTGGTTTTTGGAGTAGGCCTTCCGATCACCATGAAGAAGACAATACTGCTTCGGCACAAAGAAGTCAGTTTATTTCCAGTGCTGGTAGCGCAGTGACCATGGCCCAAGAAGTAGTCAAAACCATGCTGGCCATGGGTTACGTGCTGGGTAAAGATACATTAACCAAAGCCAAAGCCTTTGATGAATCTCATCAGGTTTCAGCAACGGCAGCAGCTAAGACCACCAAATCAGCTATATCAGCCACAGGAAGAACAGCTGCTGCCGCTGCTGATACCGTGGTGAGGAGTAGCTACTTCTCTAGGGGAGCTCTTTTCATGTCTGATGCCCTGAATCGAGCAGCCAAAGTTGCAGCTGACTTGGGCAATAGCTCTCTGCAAGTTACAGGGCAGGGGGAAGAACATGGATCCACCCCATTCCAATGGGGCAGTGCAAAGCTTCCAACTCATATGGCATGTGATGCAGCTGAGAATCCTTTGTCTCTGCCCAATTTCTTTTTTCAAGAAAGAAAGGAAAGAAAGAAAGAAAGAAAGAAAAATGATGATGGGAAAGAGGTTGGTCCTGGTGCACGATACCCTGTTGGTGGGACAAGATTCCGGCCGCAGACGGCGGCGATTGCAGCTCCGGCCACCATGACAAGCAATGGGATGGCTTTTTTCCCAGCAAATTTCATGCTACAAACTTCCCATGAAGATCATGATCATCATCACCACTCTAATTCTCCTCCATCTCTCAACCCAATTCTACCTTCTTGCACACCCCAAGATTTTCATGGAGTTGCATCTTTTCTAGGAAAACGATCTATGTCATTTTCAGGGGCGGAAATGGTGGAAGAAGGGAATAACGGTGAGGATGAATTTTCTGATGATGGGTCACAGGCAGGTGAGAAAAAGAGAAGACTTAACATGGAGCAAGTGAAAACACTTGAGAAAAATTTCGAATTGGGAAATAAACTTGAACCTGAGAGAAAAATGCAGCTGGCTAGAGCCCTTGGTCTGCAGCCAAGACAAATTGCTATTTGGTTTCAAAACAGAAGAGCTCGCTGGAAAACCAAGCAGCTTGAAAAAGACTATGATCTTCTCAAAAGACAATTTGAAGCTATCAAATCAGATAACGAAGCCCTCAAATCCCACAACCAAAAACTTCAAGCAGAGGTGGCGGTTATTGAGATGAGAACCCCCTTATGGAGGAATAATAAAGATGTTCTTTTTTTTGGGTTTTGA | 1473 | 44.74 | MNPGGYTVEVTGLSPKATEKDVLDFFAFSGAIELVEIVRSGEDACTAYVTFKDAYSQETACLLSGATIVDQRVCITRWGHFDDEFGFWSRPSDHHEEDNTASAQRSQFISSAGSAVTMAQEVVKTMLAMGYVLGKDTLTKAKAFDESHQVSATAAAKTTKSAISATGRTAAAAADTVVRSSYFSRGALFMSDALNRAAKVAADLGNSSLQVTGQGEEHGSTPFQWGSAKLPTHMACDAAENPLSLPNFFFQERKERKKERKKNDDGKEVGPGARYPVGGTRFRPQTAAIAAPATMTSNGMAFFPANFMLQTSHEDHDHHHHSNSPPSLNPILPSCTPQDFHGVASFLGKRSMSFSGAEMVEEGNNGEDEFSDDGSQAGEKKRRLNMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWKTKQLEKDYDLLKRQFEAIKSDNEALKSHNQKLQAEVAVIEMRTPLWRNNKDVLFFGF | 490 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 36029033 | 36044353 | + | ClCG05G024440.2 | Cla05g02458 | 273948 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cla05g02458 | 490 | MobiDBLite | consensus disorder prediction | 253 | 269 | - | - | |
Cla05g02458 | 490 | SUPERFAMILY | RNA-binding domain, RBD | 5 | 77 | IPR035979 | GO:0003676 | |
Cla05g02458 | 490 | PANTHER | RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN | 157 | 208 | - | - | |
Cla05g02458 | 490 | PRINTS | Lambda-repressor HTH signature | 406 | 415 | IPR000047 | GO:0003677 | |
Cla05g02458 | 490 | PRINTS | Lambda-repressor HTH signature | 415 | 431 | IPR000047 | GO:0003677 | |
Cla05g02458 | 490 | SUPERFAMILY | Homeodomain-like | 370 | 437 | IPR009057 | - | |
Cla05g02458 | 490 | PANTHER | SERINE/ARGININE-RICH SPLICING FACTOR | 157 | 208 | - | - | |
Cla05g02458 | 490 | Pfam | Homeobox associated leucine zipper | 435 | 470 | IPR003106 | GO:0006355|GO:0043565 | |
Cla05g02458 | 490 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 10 | 69 | IPR000504 | GO:0003723 | |
Cla05g02458 | 490 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 6 | 72 | IPR000504 | GO:0003723 | |
Cla05g02458 | 490 | ProSiteProfiles | 'Homeobox' domain profile. | 375 | 435 | IPR001356 | GO:0003677 | |
Cla05g02458 | 490 | Coils | Coil | 427 | 475 | - | - | |
Cla05g02458 | 490 | SMART | rrm1_1 | 7 | 77 | IPR000504 | GO:0003723 | |
Cla05g02458 | 490 | Pfam | Homeodomain | 380 | 433 | IPR001356 | GO:0003677 | |
Cla05g02458 | 490 | Gene3D | - | 372 | 441 | - | - | |
Cla05g02458 | 490 | PANTHER | SERINE/ARGININE-RICH SPLICING FACTOR | 1 | 159 | - | - | |
Cla05g02458 | 490 | Gene3D | - | 5 | 76 | IPR012677 | - | |
Cla05g02458 | 490 | PANTHER | RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN | 1 | 159 | - | - | |
Cla05g02458 | 490 | MobiDBLite | consensus disorder prediction | 253 | 280 | - | - | |
Cla05g02458 | 490 | SMART | HOX_1 | 378 | 439 | IPR001356 | GO:0003677 | |
Cla05g02458 | 490 | MobiDBLite | consensus disorder prediction | 361 | 380 | - | - | |
Cla05g02458 | 490 | CDD | bZIP | 426 | 470 | - | - | |
Cla05g02458 | 490 | CDD | RRM_Vip1_like | 8 | 76 | IPR034360 | - | |
Cla05g02458 | 490 | ProSitePatterns | 'Homeobox' domain signature. | 410 | 433 | IPR017970 | GO:0000981|GO:0006355 | |
Cla05g02458 | 490 | CDD | homeodomain | 380 | 436 | IPR001356 | GO:0003677 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cla05g02458 | Cla-Chr5:36029033 | Cla09g01793 | Cla-Chr9:35458682 | 2.00E-62 | dispersed | |
Cla05g02458 | Cla-Chr5:36029033 | Cla09g01791 | Cla-Chr9:35417030 | 2.69E-58 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
61183 | PF00076 | RRM_1 | 3.00E-05 | CL0221 | Cla | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cla05g02458 | K09338 | - | csv:101221355 | 341.273 |