Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g02458 ATGAATCCTGGTGGTTATACGGTTGAAGTGACGGGCTTGTCTCCTAAAGCAACAGAGAAAGATGTCCTCGATTTCTTCGCTTTCTCTGGCGCAATCGAGCTTGTTGAGATTGTTAGATCTGGTGAAGATGCCTGCACTGCCTATGTAACATTCAAAGATGCTTATTCTCAAGAGACTGCTTGCTTGCTGAGTGGTGCAACAATTGTAGATCAAAGAGTATGTATAACACGGTGGGGACATTTTGATGATGAATTTGGTTTTTGGAGTAGGCCTTCCGATCACCATGAAGAAGACAATACTGCTTCGGCACAAAGAAGTCAGTTTATTTCCAGTGCTGGTAGCGCAGTGACCATGGCCCAAGAAGTAGTCAAAACCATGCTGGCCATGGGTTACGTGCTGGGTAAAGATACATTAACCAAAGCCAAAGCCTTTGATGAATCTCATCAGGTTTCAGCAACGGCAGCAGCTAAGACCACCAAATCAGCTATATCAGCCACAGGAAGAACAGCTGCTGCCGCTGCTGATACCGTGGTGAGGAGTAGCTACTTCTCTAGGGGAGCTCTTTTCATGTCTGATGCCCTGAATCGAGCAGCCAAAGTTGCAGCTGACTTGGGCAATAGCTCTCTGCAAGTTACAGGGCAGGGGGAAGAACATGGATCCACCCCATTCCAATGGGGCAGTGCAAAGCTTCCAACTCATATGGCATGTGATGCAGCTGAGAATCCTTTGTCTCTGCCCAATTTCTTTTTTCAAGAAAGAAAGGAAAGAAAGAAAGAAAGAAAGAAAAATGATGATGGGAAAGAGGTTGGTCCTGGTGCACGATACCCTGTTGGTGGGACAAGATTCCGGCCGCAGACGGCGGCGATTGCAGCTCCGGCCACCATGACAAGCAATGGGATGGCTTTTTTCCCAGCAAATTTCATGCTACAAACTTCCCATGAAGATCATGATCATCATCACCACTCTAATTCTCCTCCATCTCTCAACCCAATTCTACCTTCTTGCACACCCCAAGATTTTCATGGAGTTGCATCTTTTCTAGGAAAACGATCTATGTCATTTTCAGGGGCGGAAATGGTGGAAGAAGGGAATAACGGTGAGGATGAATTTTCTGATGATGGGTCACAGGCAGGTGAGAAAAAGAGAAGACTTAACATGGAGCAAGTGAAAACACTTGAGAAAAATTTCGAATTGGGAAATAAACTTGAACCTGAGAGAAAAATGCAGCTGGCTAGAGCCCTTGGTCTGCAGCCAAGACAAATTGCTATTTGGTTTCAAAACAGAAGAGCTCGCTGGAAAACCAAGCAGCTTGAAAAAGACTATGATCTTCTCAAAAGACAATTTGAAGCTATCAAATCAGATAACGAAGCCCTCAAATCCCACAACCAAAAACTTCAAGCAGAGGTGGCGGTTATTGAGATGAGAACCCCCTTATGGAGGAATAATAAAGATGTTCTTTTTTTTGGGTTTTGA 1473 44.74 MNPGGYTVEVTGLSPKATEKDVLDFFAFSGAIELVEIVRSGEDACTAYVTFKDAYSQETACLLSGATIVDQRVCITRWGHFDDEFGFWSRPSDHHEEDNTASAQRSQFISSAGSAVTMAQEVVKTMLAMGYVLGKDTLTKAKAFDESHQVSATAAAKTTKSAISATGRTAAAAADTVVRSSYFSRGALFMSDALNRAAKVAADLGNSSLQVTGQGEEHGSTPFQWGSAKLPTHMACDAAENPLSLPNFFFQERKERKKERKKNDDGKEVGPGARYPVGGTRFRPQTAAIAAPATMTSNGMAFFPANFMLQTSHEDHDHHHHSNSPPSLNPILPSCTPQDFHGVASFLGKRSMSFSGAEMVEEGNNGEDEFSDDGSQAGEKKRRLNMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWKTKQLEKDYDLLKRQFEAIKSDNEALKSHNQKLQAEVAVIEMRTPLWRNNKDVLFFGF 490
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 36029033 36044353 + ClCG05G024440.2 Cla05g02458 273948
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g02458 490 MobiDBLite consensus disorder prediction 253 269 - -
Cla05g02458 490 SUPERFAMILY RNA-binding domain, RBD 5 77 IPR035979 GO:0003676
Cla05g02458 490 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 157 208 - -
Cla05g02458 490 PRINTS Lambda-repressor HTH signature 406 415 IPR000047 GO:0003677
Cla05g02458 490 PRINTS Lambda-repressor HTH signature 415 431 IPR000047 GO:0003677
Cla05g02458 490 SUPERFAMILY Homeodomain-like 370 437 IPR009057 -
Cla05g02458 490 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 157 208 - -
Cla05g02458 490 Pfam Homeobox associated leucine zipper 435 470 IPR003106 GO:0006355|GO:0043565
Cla05g02458 490 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 10 69 IPR000504 GO:0003723
Cla05g02458 490 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 72 IPR000504 GO:0003723
Cla05g02458 490 ProSiteProfiles 'Homeobox' domain profile. 375 435 IPR001356 GO:0003677
Cla05g02458 490 Coils Coil 427 475 - -
Cla05g02458 490 SMART rrm1_1 7 77 IPR000504 GO:0003723
Cla05g02458 490 Pfam Homeodomain 380 433 IPR001356 GO:0003677
Cla05g02458 490 Gene3D - 372 441 - -
Cla05g02458 490 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 1 159 - -
Cla05g02458 490 Gene3D - 5 76 IPR012677 -
Cla05g02458 490 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 1 159 - -
Cla05g02458 490 MobiDBLite consensus disorder prediction 253 280 - -
Cla05g02458 490 SMART HOX_1 378 439 IPR001356 GO:0003677
Cla05g02458 490 MobiDBLite consensus disorder prediction 361 380 - -
Cla05g02458 490 CDD bZIP 426 470 - -
Cla05g02458 490 CDD RRM_Vip1_like 8 76 IPR034360 -
Cla05g02458 490 ProSitePatterns 'Homeobox' domain signature. 410 433 IPR017970 GO:0000981|GO:0006355
Cla05g02458 490 CDD homeodomain 380 436 IPR001356 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g02458 Cla-Chr5:36029033 Cla09g01793 Cla-Chr9:35458682 2.00E-62 dispersed
Cla05g02458 Cla-Chr5:36029033 Cla09g01791 Cla-Chr9:35417030 2.69E-58 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61183 PF00076 RRM_1 3.00E-05 CL0221 Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g02458 K09338 - csv:101221355 341.273