Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g02464 ATGTCCATCCTTAGTGCTTCTCCACGCAAACCATTCAATAGAAACTCAGAAATCATTGCATTTACAGATGCCAAGTTTCTGTGGGGCATTTCGTCGAACGCCTTTAGGCTGTTGCTCCATAGACAGAGGCAGGAAAATGGAACTGTTAGAACGAAGGGAGGCCGGGCGAGTGGCTCTACTTTGGATTTTCCCTTTGCTCTTTCTGCTCCTGATCGTGTTCTCGTCACCGGGGAAGTCCCTCTCGTTAAGCCGGTAGAGAAATTGAAATTGAGGTTTCTCTTTGATTTAGTTTCTCAATCCATCAACATCAGTAAAGGCTCTCGCCGCGCTAGGTTACAGCCGGTGAGGATGTCTACTCCTGCAAGGAAGAGACTGATGAGAGATTTCAAGAGGTTGCAGCAAGATCCACCTGCTGGTATCAGTGGTGCTCCCCAAGACAATAATATCATGCTATGGAATGCTGTTATATTTGGGCCAGATGATACACCATGGGATGGAGGTACGTTTAAGCTTACTCTTCAGTTTACTGAGGATTATCCAAATAAGCCACCAACAGTCCGCTTTGTGTCTAGAATGTTCCACCCTAACATTTATGCCGATGGAAGCATTTGTTTGGACATTCTGCAAAATCAGTGGAGCCCAATCTATGATGTAGCAGCTATACTCACCTCTATTCAGGTACCACCTAATCAACTTGGCCTTAATTCGCTGCTGTGTGATCCCAATCCAAACTCTCCGGCTAATTCTGAAGCTGCTAGGATGTTTAGCGAGAATAAGCGTGAGTACAACAGGAGAGGACATGAGAATGTTGTATCGTTTCCTCAGATGCCAGGGCGACAATGTGGACGTGCTCAAGAATGGACCAAAGGCCGATGCCTCAGATTGGCTGCTCTTCCACGTGCTGCGAAGGGATTGTTCTCTGCTTGTCTTAACGGCAGTTTAGGGCAGAGATCCAGGGGTTTTGTTTACGGCGTGGGTACGGGAAAGGATGTATCGACGTGCAACGAGCTGGTGTTTAGTTTCGTTAAGGCATGGCCGGTGAGGATGTCTACTCCTGCAAGGAAGAGACTGATGAGGGACTTTAAGAGGTTGCAACAAGATCCACCTGCCGGTATCAGTGGTGCTCCCCAAGACAATAATATCATGCTTTGGAATGCTGTTATATTTGGGCCAGATGATACACCTTGGGATGGAGGTACGTTTAAGCTGACCCTGCAGTTCACCGAGGATTATCCAAATAAGCCACCGACAGTCCGCTTTGTGTCTAGAATGTTCCACCCCAATATTTATGCTGATGGAAGCATTTGTTTGGACATTCTGCAAAATCAATGGAGCCCAATCTATGATGTAGCAGCTATACTTACCTCTATTCAGAAGTATATCACATATGGTTCACGTGTCCTCAAGGACGCCTATCATAACATATTTATGGATCTGGCTGCGCAATCGTTGCTGTGCGACCCCAATCCAAATTCTCCTGCTAATTCTGAAGCTGCTAGGATGTTTAGCGAGAACAAGCGTGAGTACAACAGGAGAGTACGCGAGATCGTGGAACAGAGTTGGACTGCTGATTAG 1575 46.6 MSILSASPRKPFNRNSEIIAFTDAKFLWGISSNAFRLLLHRQRQENGTVRTKGGRASGSTLDFPFALSAPDRVLVTGEVPLVKPVEKLKLRFLFDLVSQSINISKGSRRARLQPVRMSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQVPPNQLGLNSLLCDPNPNSPANSEAARMFSENKREYNRRGHENVVSFPQMPGRQCGRAQEWTKGRCLRLAALPRAAKGLFSACLNGSLGQRSRGFVYGVGTGKDVSTCNELVFSFVKAWPVRMSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQKYITYGSRVLKDAYHNIFMDLAAQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQSWTAD 524
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 36093997 36106711 - ClCG05G024500.1 Cla05g02464 273954

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g02464 524 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 193 208 IPR023313 -
Cla05g02464 524 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 480 524 - -
Cla05g02464 524 CDD UBCc 355 517 IPR000608 -
Cla05g02464 524 SMART ubc_7 123 275 - -
Cla05g02464 524 SMART ubc_7 355 522 - -
Cla05g02464 524 SUPERFAMILY UBC-like 110 268 IPR016135 -
Cla05g02464 524 Gene3D Ubiquitin Conjugating Enzyme 94 289 IPR016135 -
Cla05g02464 524 SUPERFAMILY UBC-like 351 521 IPR016135 -
Cla05g02464 524 Pfam Ubiquitin-conjugating enzyme 356 461 IPR000608 -
Cla05g02464 524 Pfam Ubiquitin-conjugating enzyme 124 267 IPR000608 -
Cla05g02464 524 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 2 339 461 - -
Cla05g02464 524 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 2 480 524 - -
Cla05g02464 524 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 339 461 - -
Cla05g02464 524 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 107 270 - -
Cla05g02464 524 CDD UBCc 123 268 IPR000608 -
Cla05g02464 524 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 120 275 IPR000608 -
Cla05g02464 524 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 425 440 IPR023313 -
Cla05g02464 524 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 352 522 IPR000608 -
Cla05g02464 524 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 2 107 270 - -
Cla05g02464 524 Gene3D Ubiquitin Conjugating Enzyme 347 520 IPR016135 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g02464 K10573 UBE2A, UBC2, RAD6A; ubiquitin-conjugating enzyme E2 A [EC:2.3.2.23] - csv:101222773 306.605
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g00779 Cla-Chr2:9865930 Cla05g02464 Cla-Chr5:36093997 2.70E-22 dispersed
Cla03g00159 Cla-Chr3:1675813 Cla05g02464 Cla-Chr5:36093997 7.65E-23 dispersed
Cla05g02464 Cla-Chr5:36093997 Cla02g01856 Cla-Chr2:33705634 6.15E-33 dispersed
Cla05g02464 Cla-Chr5:36093997 Cla01g00064 Cla-Chr1:542564 1.09E-36 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g865 Blo01g00420 Blo16g01129 Bda01g02169 Bda11g01230 Bpe13g01427 . . . Cmo04g01716 Cmo18g01194 . Cma18g01169 . Car18g01078 . Cpe09g00159 Cpe01g01450 Bhi07g01596 Tan04g1110 . Lac13g0292 . . . Cla05g02464 Cam05g2651 Cec05g2686 Cco05g2720 Clacu05g2655 Cmu05g2507 Cre05g2623 Cone13ag0975 Cone19ag0965 Cone6ag0608 Cone9ag0612 Lsi04g00451 Csa05g02426 Chy10g00980 Cme10g00439 . . . Bda11g01230 . Bpe02g02356 Bma01g00086 Bma06g00663 . . . Cma04g01638 . Car04g01679 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001524 5 2 2 3 3 1 3 1 1 1 1 1 3 2 2 3 1 6 3 1 2 3 1 1 5 2 2 3 3 4 71