Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g02468 ATGGCTATGCACCGGCTACTGCTAACATTGTCCTTGCTGGCAACTACCGCATTTGCTGACATTGGAAACTTTGATGACTACTGGAAAGCACGTGCCGTGGACGCCGAACAAGCCGCCGCCGCCGCCTTTGAGCCTAATCCTGAAACCGTCACCAACTCCTTCAATGCCGAAGTAGGCCAGTTATTGAGTGGAAGCAACAGTACGAGGAGGAATTTGAAGAAATATACAGGGCCATGTCGAGCTACTAATCCCATCGATCGGTGCTGGAGATGCGACCCCAATTGGGCCAAGAACCGGAAGAAGCTAGCTGATTGTGTTCTGGGTTTTGGCCGCAAGACCATTGGTGGAAAGTTGGGTCCATACTACGTCGTGAACGACTCGTCAGATTCGGACCTCATGAACCCGAAACCTGGGACTCTTCGTCATGCTGTGATCCAAAAGGGACCTCTGTGGATCATCTTCTCTACCAACATGGCCATTAGGCTCACGCAGGAGCTCATCATGACCAGCGACAAGACCATTGATGCAAGAGGGGCTAATGTTCAGATTGCTTATGGGGCTGGCATTACTCTTCAGTACATCAAAAATGTCATCATCCACGGCCTTCGTATCCATCACATTGTTGTCGGTTCTGGCGGAATGATTAGAGACGCTGTCGACCACGTGGGTTTGAGGACCATGAGCGATGGTGACGGCATTTCCATCTTCGGTTCCTCCAACGTTTGGATTGACCATGTTTCCATGTCCAGGTGTCATGATGGTCTCATTGATGCCATCATGGGGTCCACTGCCATCACGATATCCAATTGTCACTTCACCCACCATAATGAGGTGATGTTGTTTGGAGCAAGTGATGGGTACTCGAATGATCAGATAATGCAAGTGACAGTAGCATTCAACCACTTTGGTCAAGGATTGGTGCAGAGGATGCCGAGGTGCCGATGGGGCTTCTTCCATGTTGTGAACAATGACTACACTCATTGGCTTATGTATGCCATTGGTGGTAGCCAGCATCCCACCATTATCAGCCAGGGAAATCGCTTCATTGCTCCTCCCAATGTATATGCTAAAGAGGTGACAAAGAGGGAGTACTCGCCGGAGGAAGTGTGGAAAAGCTGGACATGGAGATCAGAGGGAGACTTGATGATGAATGGAGCATTCTTTGTTACCTCCGGCGATCAAAGCAAGAGAAGACCCTTCTCAAGGATGGATATGATCTCCTATAAACCGGGGACATACGTTACAAGAATGACACGTTTTGCAGGCGCACTCGCCTGCTTCGTTGGTCGCCCTTGCTAA 1299 49.73 MAMHRLLLTLSLLATTAFADIGNFDDYWKARAVDAEQAAAAAFEPNPETVTNSFNAEVGQLLSGSNSTRRNLKKYTGPCRATNPIDRCWRCDPNWAKNRKKLADCVLGFGRKTIGGKLGPYYVVNDSSDSDLMNPKPGTLRHAVIQKGPLWIIFSTNMAIRLTQELIMTSDKTIDARGANVQIAYGAGITLQYIKNVIIHGLRIHHIVVGSGGMIRDAVDHVGLRTMSDGDGISIFGSSNVWIDHVSMSRCHDGLIDAIMGSTAITISNCHFTHHNEVMLFGASDGYSNDQIMQVTVAFNHFGQGLVQRMPRCRWGFFHVVNNDYTHWLMYAIGGSQHPTIISQGNRFIAPPNVYAKEVTKREYSPEEVWKSWTWRSEGDLMMNGAFFVTSGDQSKRRPFSRMDMISYKPGTYVTRMTRFAGALACFVGRPC 432
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 36113391 36114949 - ClCG05G024540.1 Cla05g02468 273958
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g02468 432 PANTHER PECTATE LYASE 13 432 - -
Cla05g02468 432 PRINTS Pollen allergen Amb family signature 105 122 IPR018082 -
Cla05g02468 432 PRINTS Pollen allergen Amb family signature 129 154 IPR018082 -
Cla05g02468 432 PRINTS Pollen allergen Amb family signature 165 181 IPR018082 -
Cla05g02468 432 PRINTS Pollen allergen Amb family signature 229 250 IPR018082 -
Cla05g02468 432 PRINTS Pollen allergen Amb family signature 309 328 IPR018082 -
Cla05g02468 432 PRINTS Pollen allergen Amb family signature 331 350 IPR018082 -
Cla05g02468 432 PRINTS Pollen allergen Amb family signature 373 397 IPR018082 -
Cla05g02468 432 PRINTS Pollen allergen Amb family signature 403 426 IPR018082 -
Cla05g02468 432 PANTHER PECTATE LYASE 18-RELATED 13 432 IPR045032 GO:0030570
Cla05g02468 432 Gene3D - 82 425 IPR012334 -
Cla05g02468 432 SMART amb_all 157 354 IPR002022 -
Cla05g02468 432 Pfam Pectate lyase, N terminus 21 72 IPR007524 GO:0030570
Cla05g02468 432 Pfam Pectate lyase 170 348 IPR002022 -
Cla05g02468 432 SUPERFAMILY Pectin lyase-like 83 423 IPR011050 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g02468 Cla-Chr5:36113391 Cla05g00372 Cla-Chr5:3399550 1.06E-167 dispersed
Cla01g01426 Cla-Chr1:28743312 Cla05g02468 Cla-Chr5:36113391 0 wgd
Cla10g01416 Cla-Chr10:29217784 Cla05g02468 Cla-Chr5:36113391 0 wgd
Cla05g02468 Cla-Chr5:36113391 Cla08g00903 Cla-Chr8:21501196 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g02468 K01728 - csv:101206497 815.453