Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g02480 ATGGGTCGCAAGAGAGATAAACCCTACCCTTCCCCCCACCTCCCTACCTCCGTCTCTAAGAGACGACGCCCTCCGCCGCCCACGGAGGACGATGATATAGACAAGCCCTTGTCGAAGCCTGCGCCGCCGCTTGCCCTAGTCATCGTTGACCTACCTTCACACTGTTCGGTCCTTGACTTGAAGTCCCGATTTGAGATCTACGGATCCATCTCCCGCATCCGCATCGACCGTGATTGTGTTGGCTACATCACTTATCGCACCAAAGACTCCGCCGATGCTGCCATGGCCGCCTCCCTTGATCCCTCCTTCGCCTTCACCATTGATTCCAAAAAGGTTCAGGTGCTATGGGCGAATGATCCTCAAGTCCAATGGCGGCAAGGGATTAACGTTGGTGTTAACAAGAATAAGGAATTGTCTTCAAAGCTCTTGCGGGCGGAAGTGCCGCTGAGCAGACATGGAAGAAGCAATAAGCTTGCTTCAACCATTTTCAACTCCAGTAGAAGCGACAGTTCCTCACGGTCGGATGTGCCTTTCAGGGGCAGGGAAGTTGTGCAGAGAAAGCATGCAATTTCACCAACCTAA 582 53.09 MGRKRDKPYPSPHLPTSVSKRRRPPPPTEDDDIDKPLSKPAPPLALVIVDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAMAASLDPSFAFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKELSSKLLRAEVPLSRHGRSNKLASTIFNSSRSDSSSRSDVPFRGREVVQRKHAISPT 193
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 36196432 36198111 + ClCG05G024650.1 Cla05g02480 273970
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g02480 193 MobiDBLite consensus disorder prediction 160 193 - -
Cla05g02480 193 MobiDBLite consensus disorder prediction 23 37 - -
Cla05g02480 193 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 46 96 IPR000504 GO:0003723
Cla05g02480 193 Gene3D - 19 181 IPR012677 -
Cla05g02480 193 CDD RRM_SF 46 88 - -
Cla05g02480 193 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 44 119 IPR000504 GO:0003723
Cla05g02480 193 MobiDBLite consensus disorder prediction 1 38 - -
Cla05g02480 193 SMART rrm1_1 45 115 IPR000504 GO:0003723
Cla05g02480 193 SUPERFAMILY RNA-binding domain, RBD 22 129 IPR035979 GO:0003676
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g02480 - - bhj:120081339 299.671