Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g02486 AAGTTTCTTCAACCTCTTGCAATTAGCATCCACATTTTGAAGGCTTTGAGCGATCGAGGTAGCTGTGTGATGGGGGTGGACTACTACAATGTGTTGAAGGTGAACAGAAATGCGAATGAAGAAGACTTGAAGAGGTCCTATAAGAGGTTGGCTATGAAATGGCATCCTGATAAGAATCCTTACAACAAGAAAGAGGCGGAGGCTAAGTTCAAGCAGATCTCTGAGGCTTATGATGTGTTAAGCGACTCTAAGAAGCGTCAGATCTACGATGTCTACGGCGAGGAGGCTCTTAAGTCTGCTGATTTTGTTCCTCCGCCTAATTCTAATCCTTCTTTTTCCTATGTCCCTCGTGATGCCGACGACATTTTTGCCGAGTTTTTCGGCGGAGTTGGGAGTGGTAAGAGCCGAGGGTTTAGAGGAGAGAGTTTGTTTAGGAATGGGAAGGCGGAGGCCGGGAAACAATCGAATAGGAAAGCACCGCCAATTGAGAGCAAGTTGATGTGTAGTTTGGAGGAGCTCTACAAAGGTTCCAGAAGGAAGATGAGGATTTCCCGCACTGTCCCTGATGAATTTGGGAAACCAAAAAATGTTGATGAAGTGTTGAAAATAGATATTAAGCCTGGTTGGAAGAAGGGGACAAAAATCACTTTCCCTGAGAAAGGAAATCAAGAACCTGGTGTTGCTCCTGCTGATCTTATATTTATCATCGATGAGAAACCGCATCCTGTTTTTGAGAGGGATGGTAATGATTTGGTAGTCAATCAGAAAATATCTCTATTAGAAGCACTCACCGGAAAGACATTGAACATTACAACTTTAGATGGAAGAGATCTTACTACTGTAACTGATATTGTCAAACCGGGTTACGAGGTAGTGATCCAAAATGAAGGAATGCCCATCTCTAAAGAACCAAACAAGAAGGGGAATCTTAGAATCAAGTTTGATATCATTTTCCCATCAAAGCTTACTTTTGAACAGAAATCTGATCTAAGAAGGGCTTTGGGTGGTTCTGATTAA 1017 42.48 KFLQPLAISIHILKALSDRGSCVMGVDYYNVLKVNRNANEEDLKRSYKRLAMKWHPDKNPYNKKEAEAKFKQISEAYDVLSDSKKRQIYDVYGEEALKSADFVPPPNSNPSFSYVPRDADDIFAEFFGGVGSGKSRGFRGESLFRNGKAEAGKQSNRKAPPIESKLMCSLEELYKGSRRKMRISRTVPDEFGKPKNVDEVLKIDIKPGWKKGTKITFPEKGNQEPGVAPADLIFIIDEKPHPVFERDGNDLVVNQKISLLEALTGKTLNITTLDGRDLTTVTDIVKPGYEVVIQNEGMPISKEPNKKGNLRIKFDIIFPSKLTFEQKSDLRRALGGSD 338
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 36254108 36256030 - ClCG05G024710.1 Cla05g02486 273976

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g02486 338 ProSitePatterns Nt-dnaJ domain signature. 70 89 IPR018253 -
Cla05g02486 338 CDD DnaJ_C 160 322 - -
Cla05g02486 338 Gene3D - 241 320 - -
Cla05g02486 338 SUPERFAMILY Chaperone J-domain 26 133 IPR036869 -
Cla05g02486 338 Gene3D - 161 239 - -
Cla05g02486 338 PRINTS DnaJ domain signature 29 47 IPR001623 -
Cla05g02486 338 PRINTS DnaJ domain signature 85 104 IPR001623 -
Cla05g02486 338 PRINTS DnaJ domain signature 65 85 IPR001623 -
Cla05g02486 338 PRINTS DnaJ domain signature 47 62 IPR001623 -
Cla05g02486 338 Pfam DnaJ C terminal domain 162 319 IPR002939 -
Cla05g02486 338 Pfam DnaJ domain 27 90 IPR001623 -
Cla05g02486 338 CDD DnaJ 27 82 IPR001623 -
Cla05g02486 338 SMART dnaj_3 26 85 IPR001623 -
Cla05g02486 338 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 24 336 - -
Cla05g02486 338 Gene3D DnaJ domain 26 138 IPR036869 -
Cla05g02486 338 SUPERFAMILY HSP40/DnaJ peptide-binding domain 243 328 IPR008971 GO:0006457|GO:0051082
Cla05g02486 338 ProSiteProfiles dnaJ domain profile. 27 93 IPR001623 -
Cla05g02486 338 SUPERFAMILY HSP40/DnaJ peptide-binding domain 161 242 IPR008971 GO:0006457|GO:0051082
Cla05g02486 338 PANTHER DNAJ HEAT SHOCK FAMILY PROTEIN 24 336 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g02486 K09510 DNAJB4; DnaJ homolog subfamily B member 4 - csv:101205643 606.675
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g02486 Cla-Chr5:36254108 Cla11g01543 Cla-Chr11:29132488 5.80E-48 dispersed
Cla01g00595 Cla-Chr1:6806400 Cla05g02486 Cla-Chr5:36254108 2.14E-13 transposed
Cla01g02273 Cla-Chr1:36628309 Cla05g02486 Cla-Chr5:36254108 2.94E-129 transposed
Cla02g00231 Cla-Chr2:2401119 Cla05g02486 Cla-Chr5:36254108 1.86E-134 transposed
Cla02g01495 Cla-Chr2:29465391 Cla05g02486 Cla-Chr5:36254108 6.45E-12 transposed
Cla05g01762 Cla-Chr5:29464438 Cla05g02486 Cla-Chr5:36254108 1.35E-124 transposed
Cla06g01033 Cla-Chr6:22360474 Cla05g02486 Cla-Chr5:36254108 3.96E-07 transposed
Cla09g00112 Cla-Chr9:1144075 Cla05g02486 Cla-Chr5:36254108 3.30E-12 transposed
Cla09g00488 Cla-Chr9:4633411 Cla05g02486 Cla-Chr5:36254108 1.38E-46 transposed
Cla10g02092 Cla-Chr10:36621238 Cla05g02486 Cla-Chr5:36254108 3.08E-108 transposed
Cla10g02109 Cla-Chr10:36779527 Cla05g02486 Cla-Chr5:36254108 5.56E-14 transposed
Cla01g01417 Cla-Chr1:28660934 Cla05g02486 Cla-Chr5:36254108 1.50E-145 wgd
Cla04g01261 Cla-Chr4:27751721 Cla05g02486 Cla-Chr5:36254108 1.98E-10 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g837 . . . . . . . . Cmo04g01698 Cmo18g01210 . Cma18g01189 . Car18g01097 Sed06g1576 Cpe09g00141 Cpe01g01433 Bhi07g01633 Tan04g1134 Cmetu10g0412 Lac13g0266 Hepe10g1703 . . Cla05g02486 Cam05g2670 Cec05g2704 Cco05g2739 Clacu05g2672 Cmu05g2526 Cre05g2641 Cone13ag0986 Cone19ag0978 . . . Csa05g02400 Chy10g00962 Cme10g00464 . . . . . . . . . . . Cma04g01621 . Car04g01662 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009703 1 1 0 0 0 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 2 33