Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g02489 ATGAAATGGGAGAGATGTTGGGGTTTGGATTTGTCCATGTGTGTACTACTTCCACTGGCTCTTTATCCTCTTCCTAAATTCATATCCATCCATAGTTTTGAAACTATTTCAAAATCTCATGCTTGTCACTGGAAAATGCTTCCAGCAATCCCACAAAATGCACAGTCTATTCCAATTGAAATCAAGCGCGAAGCTTTCCATACCCATCAAAGTCGGCTTCTTCACTTGTTGACCGACTGTACTGATTTGTCAAAGCTCAAACAGATACATGCTCAGGTAATTCGCAACTTCTCAACCCACAAATCCTCTCTCTTTCTCTACAGTCGAATTCTCCACGTTTCTTCTAAAACTGATTTTGATTATGCCTGCCGTGTTTTTTATCAAATCGGTAACCCCAATTCGTTCATGTGGAACACTCTGATCGGAGCTTGTGCACGGAGCTTGGATCGGAAAGAGCAAGCGATTGAACTCTTTTACAGAATGTTAGAAGAAGGCTTAGTTGAACCAGATAAACATACTTTTCCTTTTCTTCTTAAAGCTTGTGCTTACTTATTCGCTTTATCTGAAGGGAGGCAAGCGCATGCTCATATCGTTAAACTTGGGTTAGATTCCGATGTTTATGTTGGCAATAGCTTGATTCATTTATATGCTTCTTGTGGATGTTTGAGTTTATCATTGAAGGTGTTCGATAAAATGCTTCTTAGAAGTTTGGTGTCGTGGAATGTGATGATTGATGCATATGTTCAATGTGGGCTTTTCGAGAATGCTCTCAAGCTATTTGTTGAAATGCAGAACAGTTTTGAGCCAGACGGGTATACAATGCAGAGTATAATTAGTGCTTGTGCTGGTATTGGAGCTTTATCTTTGGGGATGTGGGCTCATGCTTATGTGTTGAGGAAGCCCAGTGGCGGTATGGTGGGTGATGTCCTGATCAACTCCTCACTGGTGGATATGTATAGCAAGTGTGGTTCTTTGAGAATGGCTCAGCAGGTCTTTGAGAGAATGCCCAAACATGACTTGAATTCATTGAATTCGATGATTCTAGCACTCGCCATGCACGGACAGGGGGAGGACGCCTTGCAATGTTTCTCTCGGCTGGTTGAAATGGAGAAGTTTATGCCCAATTCTGTCACATTCGTTGGCGTTCTTAGTGCATGTAACCACAGAGGCATGGTTGCTGATGGCCGGAAATATTTTGATATGATGGTTAATGAGTACAAGATTGAACCTCGGTTGGAGCATTATGGATGCCTTGTTGATCTTCTATCTCGCTCTGGTTTCATTAATGAAGCTTTGGAGTTAGTGGCAAGTATGCATATAAAACCAGATGCAGTGATCTGGAGGAGTCTTCTTGATGCTTGCTACAAGCAGAATGCTGGTGTTGAGTTGAGCGAAGAAGTGGCATTGGAGATTCTTCAATCTGAAAAAACAGCGTCCAGTGGTGTTTATGTGTTGTTGTCAAGAGTCTATGCTTCTGCATGCCAGTGGAACGATGTCGGGCTCATAAGGAAGGCTATGGTCGATAAGGGTGTGACAAAAGAGCCCGGCTGCAGTTCGATAGAAATTGATGGTATTAACCATGAGTTTTTTGCAGGAGACACATCTCACCCCAAGATAAAAGAGATCTACAGTGTTATTGATTTGATTGAGGATAAATTAGAGAAACATGGTTACTCACCTGACTGTTCACAGGCAACCATGGTAGACGAACCCGATAACATCAAACAACAGTCGCTTAAGTTGCATAGTGAGAGACTTGCCATTGCTTTTGGGTTACTAAACTTGAAACCCAGTATACCGATGCGTATATTTAAGAATCTTAGAGTATGCAACGATTGCCACCATGTCACAAAGTTGATTTCTCAAATCTTCAACGTAGAGATTATCATGAGAGATCGTAATAGGTTTCATCATTTCAAGAATGGAATGTGTTCTTGCATGGACTTCTGGTGA 1953 41.68 MKWERCWGLDLSMCVLLPLALYPLPKFISIHSFETISKSHACHWKMLPAIPQNAQSIPIEIKREAFHTHQSRLLHLLTDCTDLSKLKQIHAQVIRNFSTHKSSLFLYSRILHVSSKTDFDYACRVFYQIGNPNSFMWNTLIGACARSLDRKEQAIELFYRMLEEGLVEPDKHTFPFLLKACAYLFALSEGRQAHAHIVKLGLDSDVYVGNSLIHLYASCGCLSLSLKVFDKMLLRSLVSWNVMIDAYVQCGLFENALKLFVEMQNSFEPDGYTMQSIISACAGIGALSLGMWAHAYVLRKPSGGMVGDVLINSSLVDMYSKCGSLRMAQQVFERMPKHDLNSLNSMILALAMHGQGEDALQCFSRLVEMEKFMPNSVTFVGVLSACNHRGMVADGRKYFDMMVNEYKIEPRLEHYGCLVDLLSRSGFINEALELVASMHIKPDAVIWRSLLDACYKQNAGVELSEEVALEILQSEKTASSGVYVLLSRVYASACQWNDVGLIRKAMVDKGVTKEPGCSSIEIDGINHEFFAGDTSHPKIKEIYSVIDLIEDKLEKHGYSPDCSQATMVDEPDNIKQQSLKLHSERLAIAFGLLNLKPSIPMRIFKNLRVCNDCHHVTKLISQIFNVEIIMRDRNRFHHFKNGMCSCMDFW 650
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 36280400 36282352 + ClCG05G024740.2 Cla05g02489 273979

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g02489 650 Pfam DYW family of nucleic acid deaminases 557 650 IPR032867 GO:0008270
Cla05g02489 650 Gene3D Tetratricopeptide repeat domain 313 529 IPR011990 GO:0005515
Cla05g02489 650 Gene3D Tetratricopeptide repeat domain 187 305 IPR011990 GO:0005515
Cla05g02489 650 PANTHER OS01G0913400 PROTEIN-RELATED 63 591 - -
Cla05g02489 650 Pfam E+ motif 527 546 IPR046849 -
Cla05g02489 650 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 236 266 IPR002885 -
Cla05g02489 650 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 133 168 IPR002885 -
Cla05g02489 650 Gene3D Tetratricopeptide repeat domain 61 186 IPR011990 GO:0005515
Cla05g02489 650 PANTHER BNAC04G18690D PROTEIN 63 591 - -
Cla05g02489 650 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 308 342 IPR002885 -
Cla05g02489 650 Pfam PPR repeat 210 234 IPR002885 -
Cla05g02489 650 Pfam PPR repeat 414 438 IPR002885 -
Cla05g02489 650 Pfam PPR repeat 343 368 IPR002885 -
Cla05g02489 650 Pfam PPR repeat 313 338 IPR002885 -
Cla05g02489 650 Pfam PPR repeat family 237 282 IPR002885 -
Cla05g02489 650 Pfam PPR repeat family 132 182 IPR002885 -
Cla05g02489 650 Pfam E motif 461 521 IPR046848 -
Cla05g02489 650 TIGRFAM PPR: pentatricopeptide repeat domain 238 265 IPR002885 -
Cla05g02489 650 TIGRFAM PPR: pentatricopeptide repeat domain 136 170 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g02489 - - - cmo:103489069 1131.32
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g02489 Cla-Chr5:36280400 Cla10g01622 Cla-Chr10:31797240 8.98E-165 dispersed
Cla05g02488 Cla-Chr5:36261645 Cla05g02489 Cla-Chr5:36280400 1.21E-28 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g836 . . . . . . Bma14g01744 . Cmo04g01697 . . . . . . . Cpe01g01432 Bhi07g01635 . . . . . . Cla05g02489 . . . . . . Cone13ag0987 . . . Lsi04g00486 . Chy10g00959 Cme10g00466 . Blo11g00874 . . . . . . . . . Cma04g01619 . Car04g01661 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012298 1 1 1 1 0 1 1 1 1 1 1 1 1 1 0 1 1 2 1 1 1 0 0 1 1 1 1 1 1 1 27