Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g02490 ATGGTAAAGATTTGGATCTCCCTCTTCTCCTTCCATTTTCATCTTCCCATGCCTTCTCCATCTCCTTCTTTTACTGTTTCCGCCATTGTTGTCTTCTTCCTTCATCTTTTTCCTCTCTTTCGTGTTGAGTCTTTGAGCTCTTCTTGTCCACCTTTCTCTTCCCAACTTCGTTTCCCTTTTTCCTCTGTTTCTGGTCATGGCCATCCTTCTTTTCAAGTGCGTTGCTCTTCTCCCCACTCTGTTATATCCATTAATGGGATTCCTTTTTCTCTGTTAAGTTTCAATATCACCTCCACCACTCTCCTTCTTTCCCCTCTTCCACTCAATGTCACTCCCACTCTCAAAGAATCGAATCACTCCTGTTTTTCTCTTCGTTCCTCCTCTATTCCCAGCCGTTCGATTGATTTCTCTGGCTCACCGTTTCGAATCTCAGATGGGTATTGTTCTAGACTCTCTCTTCTTCGCCCCTGTTCGCCTCCGCATCTACCCAATTGCAGCCATTGCCCTTGGGAGTGTAATCTCATCAAGAAACCAGTTAATTTGCTCCATGGATGCGGCGTCGAGCGTCAGTCTGTGTCGGAGCAAGGTTGTCAGGAGGAGGTTTTGGAGTATTTGGACAGAATTCTTAGATTGGGGTTTGAAGTGGAGTGGGATAAAGATCAGGACCCTTACTTTATGAAATGTAATGATTGTGAAGCTAAAAAAGGTGTTTGTGGCTTCAATGCTTCAGACCCAGATAGGCAATTCATTTGCTACTATACTCGAACTCGATACTCATACCCTAATAGAATCGCGATTTTGTCCTCCGTCTTCGCTTTGATGTGCTTGTTATTGGTTTTTGCGGTAATGTTGGCCTTTTTCAGGTCGAGATGGTTGAGATCCCTCGCCATTGAAGTAGACCCAACAGCTCAGTTCCTCAGTCGCCATCGTTCACCGAATCTTCTCCCACCGGTTTTCCCCTACGAAGAACTCGAATCCTCAACCAATCGATTCGACCCAAAGAGGAAACTAGGCGACGGTGGATTTGGGTCTGTTTATTTGGGTCAGCTCAACGATGGTCGATTAGTCGCCGTCAAGTATCTTCACAAGCACCACGCCACCGCCGCCGCGCCCTCCGGCAAGGCTTTCTTCACCAAATCGTTCTGTAACGAAATCTTGATTCTTTCTTCAATTAATCACCCAAATCTCGTTAGGTTACATGGGTATTGTAGTGATCCACGAGGGCTTATTCTAGTCTATGATTATGTCCCAAATGGGACACTCGCCGATCATCTCCATGGCCCTAAATGCTCGTACCGGAAGGGATCTCTGTCCTGGCAAGTGAGGATCGACATCGCTCTGCAAATTGCCATGGCTATGGAGTATTTGCATTTCTCTGTGGTACCGCCGATTGTTCACAGAGACATTACTTCTTCCAACATTTTTGTGGAGAAAGATATGAGAATCAAAGTTGGGGATTTTGGGCTTTCAAGGCTGTTGGTTTTCTCAGATACGACGTCGTCTTCATCTGGGTATGTCTGCACCGGACCTCAGGGGACGCCCGGTTACTTGGATCCGGATTACCACCGGTCCTTCCGGTTGACGGAGAAAAGTGACGTGTACAGCTTTGGAGTGGTGTTATTGGAGCTGATTTCTGGTCTGAAAGCGGTGGATCAGAGTCGAGAGAGAAGAGAAATGGCGCTAGCGGATCTGGTAGTGTCCAAGATCCAAATGGGTCAGCTTCATCAGGTGGTGGACTCTGTTTTGGGCGTTGACGGCGAGGTAATCGACGGCGTTGAGGCCGTGGCGGAGCTGGCATTTCGATGCGTTGCCGCGGACAAAGACGACCGCCCAGACGCCAAGGAAATCGTGGAGGAACTCCGGCGGATTCGGAACGGCACACGTGGAGGGGTCCGGTCGTCGATTTCAAACGGGAGTGCTGACGTGGCTAGAAGTTGA 1938 48.3 MVKIWISLFSFHFHLPMPSPSPSFTVSAIVVFFLHLFPLFRVESLSSSCPPFSSQLRFPFSSVSGHGHPSFQVRCSSPHSVISINGIPFSLLSFNITSTTLLLSPLPLNVTPTLKESNHSCFSLRSSSIPSRSIDFSGSPFRISDGYCSRLSLLRPCSPPHLPNCSHCPWECNLIKKPVNLLHGCGVERQSVSEQGCQEEVLEYLDRILRLGFEVEWDKDQDPYFMKCNDCEAKKGVCGFNASDPDRQFICYYTRTRYSYPNRIAILSSVFALMCLLLVFAVMLAFFRSRWLRSLAIEVDPTAQFLSRHRSPNLLPPVFPYEELESSTNRFDPKRKLGDGGFGSVYLGQLNDGRLVAVKYLHKHHATAAAPSGKAFFTKSFCNEILILSSINHPNLVRLHGYCSDPRGLILVYDYVPNGTLADHLHGPKCSYRKGSLSWQVRIDIALQIAMAMEYLHFSVVPPIVHRDITSSNIFVEKDMRIKVGDFGLSRLLVFSDTTSSSSGYVCTGPQGTPGYLDPDYHRSFRLTEKSDVYSFGVVLLELISGLKAVDQSRERREMALADLVVSKIQMGQLHQVVDSVLGVDGEVIDGVEAVAELAFRCVAADKDDRPDAKEIVEELRRIRNGTRGGVRSSISNGSADVARS 645
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 36282651 36285121 + ClCG05G024750.2 Cla05g02490 273980
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g02490 645 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.5 38 631 - -
Cla05g02490 645 CDD STKc_IRAK 337 623 - -
Cla05g02490 645 Pfam Protein kinase domain 333 618 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla05g02490 645 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 38 631 IPR045274 GO:0007166
Cla05g02490 645 SUPERFAMILY Protein kinase-like (PK-like) 311 620 IPR011009 -
Cla05g02490 645 ProSiteProfiles Protein kinase domain profile. 331 623 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla05g02490 645 Gene3D Phosphorylase Kinase; domain 1 306 415 - -
Cla05g02490 645 Pfam Wall-associated receptor kinase C-terminal 194 254 IPR032872 -
Cla05g02490 645 ProSitePatterns Protein kinases ATP-binding region signature. 337 359 IPR017441 GO:0005524
Cla05g02490 645 Gene3D Transferase(Phosphotransferase) domain 1 416 635 - -
Cla05g02490 645 ProSitePatterns Tyrosine protein kinases specific active-site signature. 464 476 IPR008266 GO:0004672|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g02490 Cla-Chr5:36282651 Cla11g00744 Cla-Chr11:10625130 6.86E-92 dispersed
Cla05g02490 Cla-Chr5:36282651 Cla04g01076 Cla-Chr4:25908676 8.75E-24 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80597 PF00069 Pkinase 6.80E-44 CL0016 Cla PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g02490 - - csv:101206111 1149.81