Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g02492 ATGACTAAAATGGCTAATTTCCCAAGCATTGCAAAATGCGATTGGAGAGGTCGAGAAAATCACACCGTGGTTGCAGACATGGATGGAACTTTAATGCGAGGTCGAAGCTCCTTGCCTTATTTTGCTATAATGGCCTTCGAACTGGGCGGCATTTTCAAGCTTCTTCTATTGGTTTTAGCCTCCCCTTTCATTGGGCTGCTCTATTATTTCGTCTCCGAATCTGCAGGGATACGAATTATGATATTCGTAGCGTTTTGTGGAGTTAAGGTGAGGAGTATCGAATCGGTGGCACGGGCGGTCCTTCCGAAATTTTACTCGACGGATGTGAATGCAGAGACGTGGCGGGTGGTGAATGGGTGTGGGAAACGGTGCGTTTTGACGGCGAATCCGAGGGTTATGGTGGAGCCGTTTCTGAAAGAGACGTTGGGAGTGGAATTGGTGATGGCGACGGAGATCATTGCGACGGAGAAAGGAAGAGCCACTGGGTTGGTTGGGGGGAAGGGAGTGTTGGTAGGGAAGAATAAGGCTGGGGCTCTTAAGGATGTATTTGGTGATTTTCAACCACATCTTGGACTTGGTGATCGTTTCACTGATGCTGATTTCATGTCCTTGTGCAAGGAGGGCTACATGGTGCCACCGAGTCCGACGGTGGAAGCAGTGGCGAGCGACAGATTACCCAAGCCAGTAATCTTCCACGACGGTCGGTTTGTTCACAAACCATCTCCCTTCTTAGCCCTACTCACCCTTCTCTGGTTTCCGATCGGCTTCTTTCTTGCCTGCTTGAGAATCGCCGCCGGTGCCCTCCTCCCAATGCCACTCGTCTACGCTTTCTTAGCCCTCGGCGTACGGATCACCGTCAAAGGCAACCCACCTCCGCCCCCAAACACCTCCAACAAAAACTCCGGCGTCCTCTTCGTCTGCTCCCACCGTACCCTACTCGACCCAATTTTCCTCTCCGTGGCTCTCCGCCGCCCCATCCCCGCCGTCACCTACTCCGTGTCCCGGCTTTCGGAGATCATATCGCCGATCAAAACCGTGCGGTTGAGTCGCGACCGAGCCAGAGACGCGTCGACTATAAAGAAGCTTCTTGAAGAAGGGGATTTGGCGATATGTCCAGAGGGAACAACGTGCAGAGAGCCGTTTCTGCTGCGATTTTCAGCTCTGTTCGCAGAGCTAACAGAGGAGGTGGTGCCGGTGGTCCGTCCGGCTTATGAGGTTACTTTTTTGGAGAAATTGCCGGCGGAATTGAGCCGGAGTTCGGGGAAATCCAGCCATGAAGTTGCTAATTACATTCAGAGACGAATTGCGGCTACGCTTTCTTATGAATGCACTGGTTTTACTCGAAAGGATAAGTATAGAGCTCTTGCTGGGAATGATGGGATTATGCTGAGAGGCCGGTCGGCCCTGGGGGGCCTGTCAGGCTGGGCCAAGGAGCCAAAGAGCACGACCGACTATTCGAAAGGGGAACGTAATCTCGAGCAAGCCGAGATGTTTGACAACTCCCCCTATTCACATAGCTAA 1521 52.4 MTKMANFPSIAKCDWRGRENHTVVADMDGTLMRGRSSLPYFAIMAFELGGIFKLLLLVLASPFIGLLYYFVSESAGIRIMIFVAFCGVKVRSIESVARAVLPKFYSTDVNAETWRVVNGCGKRCVLTANPRVMVEPFLKETLGVELVMATEIIATEKGRATGLVGGKGVLVGKNKAGALKDVFGDFQPHLGLGDRFTDADFMSLCKEGYMVPPSPTVEAVASDRLPKPVIFHDGRFVHKPSPFLALLTLLWFPIGFFLACLRIAAGALLPMPLVYAFLALGVRITVKGNPPPPPNTSNKNSGVLFVCSHRTLLDPIFLSVALRRPIPAVTYSVSRLSEIISPIKTVRLSRDRARDASTIKKLLEEGDLAICPEGTTCREPFLLRFSALFAELTEEVVPVVRPAYEVTFLEKLPAELSRSSGKSSHEVANYIQRRIAATLSYECTGFTRKDKYRALAGNDGIMLRGRSALGGLSGWAKEPKSTTDYSKGERNLEQAEMFDNSPYSHS 506
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 36301819 36304198 + ClCG05G024790.2 Cla05g02492 273982

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g02492 506 PANTHER GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE RAM2 5 400 - -
Cla05g02492 506 Pfam Acyltransferase 295 397 IPR002123 GO:0016746
Cla05g02492 506 SUPERFAMILY Glycerol-3-phosphate (1)-acyltransferase 208 461 - -
Cla05g02492 506 MobiDBLite consensus disorder prediction 474 506 - -
Cla05g02492 506 CDD LPLAT 280 436 - -
Cla05g02492 506 PANTHER GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE RAM2 402 464 - -
Cla05g02492 506 SMART plsc_2 303 404 IPR002123 GO:0016746
Cla05g02492 506 PANTHER ANCIENT UBIQUITOUS PROTEIN 402 464 - -
Cla05g02492 506 PANTHER ANCIENT UBIQUITOUS PROTEIN 5 400 - -
Cla05g02492 506 Pfam haloacid dehalogenase-like hydrolase 23 183 - -
Cla05g02492 506 Gene3D - 106 226 IPR023214 -
Cla05g02492 506 SUPERFAMILY HAD-like 22 222 IPR036412 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g02492 - - - cmax:111476493 723.391
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g02492 Cla-Chr5:36301819 Cla10g02077 Cla-Chr10:36456131 2.61E-174 dispersed
Cla10g01404 Cla-Chr10:29118722 Cla05g02492 Cla-Chr5:36301819 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g819 . . . . . . Bma14g01757 . . . . . . . . . . . . . . . . . Cla05g02492 Cam05g2677 Cec05g2711 Cco05g2746 Clacu05g2679 Cmu05g2534 Cre05g2649 Cone14ag0364 Cone15ag0400 . . Lsi04g00491 . . . . Blo11g00892 Bda07g01578 . Bpe11g01750 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003090 1 1 1 2 1 2 2 2 2 1 2 2 1 1 1 2 2 2 2 3 1 2 3 2 2 2 2 2 1 2 52